5TPZ | pdb_00005tpz

Crystal structure of amino terminal domains of the NMDA receptor subunit GluN1 and GluN2B in apo closed state

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AANF_receptor_3rde5tpzA2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: ANF_receptor_3rdECOD (1.6)
AANF_receptor_2nde5tpzA1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: ANF_receptor_2ndECOD (1.6)
B [auth D]ANF_receptor_3rde5tpzD1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: ANF_receptor_3rdECOD (1.6)
B [auth D]ANF_receptor_2nde5tpzD2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: Periplasmic binding protein-like IF: ANF_receptor_2ndECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.50.2300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Response regulatorCATH (4.3.0)
B [auth D]3.40.50.2300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Response regulatorCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01094Receptor family ligand binding region (ANF_receptor)Receptor family ligand binding regionThis family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Domain
B [auth D]PF01094Receptor family ligand binding region (ANF_receptor)Receptor family ligand binding regionThis family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
NMDA glutamate receptor subunit
B [auth D]Glutamate receptor ionotropic, NMDA 2B

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001320Ionotropic glutamate receptor, C-terminalDomain
IPR028082Periplasmic binding protein-like IHomologous Superfamily
IPR049873Glutamate [NMDA] receptor subunit 1-like, N-terminal LIVBP-like domainDomain
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
IPR015683Ionotropic glutamate receptorFamily
IPR049872Glutamate [NMDA] receptor subunit 1-like, ligand-binding domainDomain
IPR001508Ionotropic glutamate receptor, metazoaFamily
IPR001828Receptor, ligand binding regionDomain
B [auth D]IPR018884Glutamate [NMDA] receptor, epsilon subunit, C-terminalDomain
B [auth D]IPR028082Periplasmic binding protein-like IHomologous Superfamily
B [auth D]IPR001828Receptor, ligand binding regionDomain
B [auth D]IPR001320Ionotropic glutamate receptor, C-terminalDomain
B [auth D]IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainDomain
B [auth D]IPR001508Ionotropic glutamate receptor, metazoaFamily
B [auth D]IPR015683Ionotropic glutamate receptorFamily