5W9H
MERS S ectodomain trimer in complex with variable domain of neutralizing antibody G4
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Coronavirus S2 glycoprotein stalk-like | 8092154 | 3000282 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Coronavirus spike S2 glycoprotein connector domain-like | 8092156 | 3002562 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Coronavirus spike S2 glycoprotein connector domain-like | 8092156 | 3002562 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Coronavirus S2 glycoprotein stalk-like | 8092154 | 3000282 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Coronavirus S2 glycoprotein stalk-like | 8092154 | 3000282 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Coronavirus spike S2 glycoprotein connector domain-like | 8092156 | 3002562 | SCOP2B (2022-06-29) |
J [auth p] | SCOP2B Superfamily | Coronavirus S1 glycoprotein domain C-like | 8092665 | 3002615 | SCOP2B (2022-06-29) |
J [auth p] | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8092152 | 3000120 | SCOP2B (2022-06-29) |
J [auth p] | SCOP2B Superfamily | Coronavirus S1 glycoprotein domain D-like | 8092667 | 3002616 | SCOP2B (2022-06-29) |
J [auth p] | SCOP2B Superfamily | SARS coronavirus receptor-binding domain-like | 8082394 | 3001706 | SCOP2B (2022-06-29) |
K [auth q] | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8092152 | 3000120 | SCOP2B (2022-06-29) |
K [auth q] | SCOP2B Superfamily | Coronavirus S1 glycoprotein domain C-like | 8092665 | 3002615 | SCOP2B (2022-06-29) |
K [auth q] | SCOP2B Superfamily | SARS coronavirus receptor-binding domain-like | 8082394 | 3001706 | SCOP2B (2022-06-29) |
K [auth q] | SCOP2B Superfamily | Coronavirus S1 glycoprotein domain D-like | 8092667 | 3002616 | SCOP2B (2022-06-29) |
L [auth r] | SCOP2B Superfamily | Coronavirus S1 glycoprotein domain D-like | 8092667 | 3002616 | SCOP2B (2022-06-29) |
L [auth r] | SCOP2B Superfamily | SARS coronavirus receptor-binding domain-like | 8082394 | 3001706 | SCOP2B (2022-06-29) |
L [auth r] | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8092152 | 3000120 | SCOP2B (2022-06-29) |
L [auth r] | SCOP2B Superfamily | Coronavirus S1 glycoprotein domain C-like | 8092665 | 3002615 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF01601 | e5w9hA1 | A: a+b complex topology | X: S2 subunit of coronavirus spike glycoprotein (From Topology) | H: S2 subunit of coronavirus spike glycoprotein (From Topology) | T: S2 subunit of coronavirus spike glycoprotein | F: PF01601 | ECOD (1.6) |
D | PF01601 | e5w9hD1 | A: a+b complex topology | X: S2 subunit of coronavirus spike glycoprotein (From Topology) | H: S2 subunit of coronavirus spike glycoprotein (From Topology) | T: S2 subunit of coronavirus spike glycoprotein | F: PF01601 | ECOD (1.6) |
G | PF01601 | e5w9hG1 | A: a+b complex topology | X: S2 subunit of coronavirus spike glycoprotein (From Topology) | H: S2 subunit of coronavirus spike glycoprotein (From Topology) | T: S2 subunit of coronavirus spike glycoprotein | F: PF01601 | ECOD (1.6) |
J [auth p] | PF16451 | e5w9hp1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: PF16451 | ECOD (1.6) |
J [auth p] | PF19209 | e5w9hp3 | A: beta complex topology | X: Beta domain of coronavirus spike glycoprotein (From Topology) | H: Beta domain of coronavirus spike glycoprotein (From Topology) | T: Beta domain of coronavirus spike glycoprotein | F: PF19209 | ECOD (1.6) |
J [auth p] | PF09408 | e5w9hp2 | A: a+b three layers | X: Coronavirus spike protein receptor-binding domain (From Homology) | H: Coronavirus spike protein receptor-binding domain | T: Beta-coronavirus spike protein receptor-binding domain | F: PF09408 | ECOD (1.6) |
K [auth q] | PF16451 | e5w9hq1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: PF16451 | ECOD (1.6) |
K [auth q] | PF19209 | e5w9hq3 | A: beta complex topology | X: Beta domain of coronavirus spike glycoprotein (From Topology) | H: Beta domain of coronavirus spike glycoprotein (From Topology) | T: Beta domain of coronavirus spike glycoprotein | F: PF19209 | ECOD (1.6) |
K [auth q] | PF09408 | e5w9hq2 | A: a+b three layers | X: Coronavirus spike protein receptor-binding domain (From Homology) | H: Coronavirus spike protein receptor-binding domain | T: Beta-coronavirus spike protein receptor-binding domain | F: PF09408 | ECOD (1.6) |
L [auth r] | PF16451 | e5w9hr1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: PF16451 | ECOD (1.6) |
L [auth r] | PF19209 | e5w9hr3 | A: beta complex topology | X: Beta domain of coronavirus spike glycoprotein (From Topology) | H: Beta domain of coronavirus spike glycoprotein (From Topology) | T: Beta domain of coronavirus spike glycoprotein | F: PF19209 | ECOD (1.6) |
L [auth r] | PF09408 | e5w9hr2 | A: a+b three layers | X: Coronavirus spike protein receptor-binding domain (From Homology) | H: Coronavirus spike protein receptor-binding domain | T: Beta-coronavirus spike protein receptor-binding domain | F: PF09408 | ECOD (1.6) |
B | PF07686 | e5w9hB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
E | PF07686 | e5w9hE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
H | PF07686 | e5w9hH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
C | PF07686 | e5w9hC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
F | PF07686 | e5w9hF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
I | PF07686 | e5w9hI1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
F | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
I | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
Fab G4 , neutralizing | VH-CH1 | Mus musculus (house mouse) | IGHV1S137*01, IGHJ4*01, IGHG1*02 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202422-0) | |
Fab G4 , neutralizing | L-KAPPA | Mus musculus (house mouse) | IGKV3-2*01, IGKJ1*01, IGKJ2*01, IGKC*01, IGKC*02 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202422-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
Heavy Chain | IGHV1 | - | mers s | SAbDab (2024-06-07) | |
Light Chain | IGKV3 | Kappa | mers s | SAbDab (2024-06-07) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01601 | Coronavirus spike glycoprotein S2 (CoV_S2) | Coronavirus spike glycoprotein S2 | - | Family | |