6B0T | pdb_00006b0t

Structural Insights into the Induced-fit Inhibition of Fascin by a Small Molecule

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d6b0tf1	All beta proteins	beta-Trefoil	Actin-crosslinking proteins	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d6b0te1	All beta proteins	beta-Trefoil	Actin-crosslinking proteins	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d6b0td1	All beta proteins	beta-Trefoil	Actin-crosslinking proteins	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d6b0tc1	All beta proteins	beta-Trefoil	Actin-crosslinking proteins	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d6b0tb1	All beta proteins	beta-Trefoil	Actin-crosslinking proteins	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d6b0ta1	All beta proteins	beta-Trefoil	Actin-crosslinking proteins	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Actin-crosslinking proteins	8042042	3000731	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Actin-crosslinking proteins	8042041	3000731	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Actin-crosslinking proteins	8042039	3000731	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Actin-crosslinking proteins	8042040	3000731	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Actin-crosslinking proteins	8042040	3000731	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Actin-crosslinking proteins	8042039	3000731	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Actin-crosslinking proteins	8042041	3000731	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Actin-crosslinking proteins	8042042	3000731	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Actin-crosslinking proteins	8042041	3000731	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Actin-crosslinking proteins	8042039	3000731	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Actin-crosslinking proteins	8042040	3000731	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Actin-crosslinking proteins	8042042	3000731	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Actin-crosslinking proteins	8042041	3000731	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Actin-crosslinking proteins	8042039	3000731	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Actin-crosslinking proteins	8042040	3000731	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Actin-crosslinking proteins	8042042	3000731	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Actin-crosslinking proteins	8042041	3000731	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Actin-crosslinking proteins	8042040	3000731	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Actin-crosslinking proteins	8042039	3000731	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Actin-crosslinking proteins	8042042	3000731	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Actin-crosslinking proteins	8042042	3000731	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Actin-crosslinking proteins	8042040	3000731	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Actin-crosslinking proteins	8042039	3000731	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Actin-crosslinking proteins	8042041	3000731	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Fascin_1	e6b0tF1	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Fascin_1	ECOD (1.6)
F	Fascin_3	e6b0tF3	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Fascin_3	ECOD (1.6)
F	Fascin	e6b0tF4	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Fascin	ECOD (1.6)
E	Fascin_1	e6b0tE3	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Fascin_1	ECOD (1.6)
E	Fascin_3	e6b0tE4	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Fascin_3	ECOD (1.6)
E	Fascin	e6b0tE2	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Fascin	ECOD (1.6)
D	Fascin_1	e6b0tD2	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Fascin_1	ECOD (1.6)
D	Fascin_3	e6b0tD1	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Fascin_3	ECOD (1.6)
D	Fascin	e6b0tD4	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Fascin	ECOD (1.6)
C	Fascin_1	e6b0tC1	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Fascin_1	ECOD (1.6)
C	Fascin_3	e6b0tC2	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Fascin_3	ECOD (1.6)
C	Fascin	e6b0tC3	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Fascin	ECOD (1.6)
B	Fascin_1	e6b0tB4	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Fascin_1	ECOD (1.6)
B	Fascin_3	e6b0tB1	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Fascin_3	ECOD (1.6)
B	Fascin	e6b0tB2	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Fascin	ECOD (1.6)
A	Fascin_1	e6b0tA3	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Fascin_1	ECOD (1.6)
A	Fascin_3	e6b0tA1	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Fascin_3	ECOD (1.6)
A	Fascin	e6b0tA2	A: beta duplicates or obligate multimers	X: beta-Trefoil (From Topology)	H: beta-Trefoil (From Topology)	T: beta-Trefoil	F: Fascin	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Provenance Source (Version)
F	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)	CATH (4.3.0)
E	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)	CATH (4.3.0)
D	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)	CATH (4.3.0)
C	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)	CATH (4.3.0)
B	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)	CATH (4.3.0)
A	2.80.10.50	Mainly Beta	Trefoil	Trefoil (Acidic Fibroblast Growth Factor, subunit A)	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF06268	Fascin domain (Fascin)	Fascin domain	This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based st ...	This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture [1]. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven [1]. Members of this family are histidine rich, typically contain the repeated motif of HHXH [3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Fascin	cytoskeletal protein binding actin binding protein-containing complex binding protein binding binding actin filament binding RNA binding nucleic acid binding protein-macromolecule adaptor activity molecular adaptor activity cell adhesion molecule binding cadherin binding	regulation of cytoskeleton organization regulation of biological process regulation of cellular component organization regulation of cellular process regulation of actin filament-based process actin cytoskeleton organization biological regulation regulation of organelle organization cellular component organization organelle organization regulation of actin cytoskeleton organization actin filament-based process cellular process cellular component organization or biogenesis regulation of cytoskeleton organization regulation of biological process regulation of cellular component organization regulation of cellular process regulation of actin filament-based process actin cytoskeleton organization biological regulation regulation of organelle organization cellular component organization organelle organization regulation of actin cytoskeleton organization actin filament-based process cellular process cellular component organization or biogenesis cytoskeleton organization plasma membrane bounded cell projection organization cell projection organization regulation of cell projection organization regulation of cell projection assembly plasma membrane bounded cell projection assembly regulation of cellular component biogenesis microvillus organization cellular component biogenesis regulation of microvillus organization regulation of plasma membrane bounded cell projection assembly regulation of microvillus assembly cellular component assembly microvillus assembly cell projection assembly regulation of plasma membrane bounded cell projection organization cell migration cell motility actin filament organization parallel actin filament bundle assembly actin filament bundle organization actin filament bundle assembly supramolecular fiber organization cell junction organization cell junction assembly cell-cell junction assembly cell-cell junction organization establishment or maintenance of cell polarity microspike assembly establishment of cell polarity establishment or maintenance of bipolar cell polarity establishment of monopolar cell polarity establishment or maintenance of monopolar cell polarity establishment of apical/basal cell polarity establishment or maintenance of apical/basal cell polarity filopodium assembly positive regulation of cellular component organization positive regulation of biological process regulation of filopodium assembly positive regulation of cell projection organization positive regulation of filopodium assembly positive regulation of cellular process positive regulation of cellular component biogenesis positive regulation of plasma membrane bounded cell projection assembly positive regulation of organelle organization positive regulation of podosome assembly membraneless organelle assembly positive regulation of protein-containing complex assembly regulation of protein-containing complex assembly regulation of podosome assembly protein-containing complex assembly organelle assembly podosome assembly protein-containing complex organization regulation of organelle assembly positive regulation of organelle assembly regulation of lamellipodium assembly regulation of lamellipodium organization lamellipodium assembly positive regulation of lamellipodium assembly positive regulation of lamellipodium organization lamellipodium organization cellular component disassembly extracellular matrix disassembly positive regulation of extracellular matrix organization extracellular matrix organization positive regulation of extracellular matrix disassembly regulation of extracellular matrix organization regulation of extracellular matrix disassembly extracellular structure organization external encapsulating structure organization	cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium cell periphery cell cortex intracellular anatomical structure cytoplasm cell-cell junction anchoring junction cell junction intracellular organelle podosome cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium cell periphery cell cortex intracellular anatomical structure cytoplasm cell-cell junction anchoring junction cell junction intracellular organelle podosome cytoskeleton organelle membraneless organelle intracellular membraneless organelle actin cytoskeleton extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle microspike cytosol membrane plasma membrane plasma membrane region cell projection membrane growth cone axon distal axon neuron projection site of polarized growth ruffle actin filament bundle actomyosin stress fiber contractile actin filament bundle actin-based cell projection microvillus filopodium

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR024703	Fascin, metazoans	Family
A, B, C, D, E A, B, C, D, E, F	IPR010431	Fascin	Family
A, B, C, D, E A, B, C, D, E, F	IPR022768	Fascin-like domain	Domain
A, B, C, D, E A, B, C, D, E, F	IPR008999	Actin-crosslinking	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F	Pharos: Q16658	adrenal cortex carcinoma glioblastoma lung cancer malignant glioma non-small cell lung carcinoma sinusitis atopic eczema interstitial cystitis malignant colon neoplasm malignant pancreatic neoplasm ovarian cancer ulcerative colitis cystic fibrosis large cell medulloblastoma malignant ependymoma adrenal cortex carcinoma glioblastoma lung cancer malignant glioma non-small cell lung carcinoma sinusitis atopic eczema interstitial cystitis malignant colon neoplasm malignant pancreatic neoplasm ovarian cancer ulcerative colitis cystic fibrosis large cell medulloblastoma malignant ependymoma medulloblastoma psoriasis