6F9F | pdb_00006f9f

Model of the Rift Valley fever virus glycoprotein pentamer

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Phlebovirus_G2_2nd	e6f9fB2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Phlebovirus_G2_2nd	ECOD (1.6)
B	Phlebovirus_G2_1st	e6f9fB1	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: Phlebovirus_G2_1st	ECOD (1.6)
F	Phlebovirus_G2_2nd	e6f9fF1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Phlebovirus_G2_2nd	ECOD (1.6)
F	Phlebovirus_G2_1st	e6f9fF2	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: Phlebovirus_G2_1st	ECOD (1.6)
H	Phlebovirus_G2_2nd	e6f9fH1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Phlebovirus_G2_2nd	ECOD (1.6)
H	Phlebovirus_G2_1st	e6f9fH2	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: Phlebovirus_G2_1st	ECOD (1.6)
J	Phlebovirus_G2_2nd	e6f9fJ2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Phlebovirus_G2_2nd	ECOD (1.6)
J	Phlebovirus_G2_1st	e6f9fJ1	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: Phlebovirus_G2_1st	ECOD (1.6)
D	Phlebovirus_G2_2nd	e6f9fD1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Phlebovirus_G2_2nd	ECOD (1.6)
D	Phlebovirus_G2_1st	e6f9fD2	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: Phlebovirus_G2_1st	ECOD (1.6)
A	UNK_F_TYPE	e6f9fA1	A: beta complex topology	X: Phlebovirus glycoprotein Gn (From Topology)	H: Phlebovirus glycoprotein Gn (From Topology)	T: Phlebovirus glycoprotein Gn	F: UNK_F_TYPE	ECOD (1.6)
C	UNK_F_TYPE	e6f9fC1	A: beta complex topology	X: Phlebovirus glycoprotein Gn (From Topology)	H: Phlebovirus glycoprotein Gn (From Topology)	T: Phlebovirus glycoprotein Gn	F: UNK_F_TYPE	ECOD (1.6)
E	UNK_F_TYPE	e6f9fE1	A: beta complex topology	X: Phlebovirus glycoprotein Gn (From Topology)	H: Phlebovirus glycoprotein Gn (From Topology)	T: Phlebovirus glycoprotein Gn	F: UNK_F_TYPE	ECOD (1.6)
G	UNK_F_TYPE	e6f9fG1	A: beta complex topology	X: Phlebovirus glycoprotein Gn (From Topology)	H: Phlebovirus glycoprotein Gn (From Topology)	T: Phlebovirus glycoprotein Gn	F: UNK_F_TYPE	ECOD (1.6)
I	UNK_F_TYPE	e6f9fI1	A: beta complex topology	X: Phlebovirus glycoprotein Gn (From Topology)	H: Phlebovirus glycoprotein Gn (From Topology)	T: Phlebovirus glycoprotein Gn	F: UNK_F_TYPE	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F, H, J	PF07245	Phlebovirus glycoprotein G2 fusion domain (Phlebovirus_G2)	Phlebovirus glycoprotein G2 fusion domain	-	Family
B, D, F, H, J	PF19019	Phlebovirus glycoprotein G2 C-terminal domain (Phlebo_G2_C)	Phlebovirus glycoprotein G2 C-terminal domain	This family consists of several Phlebovirus glycoprotein G2 C-terminal Ig-like domains.	Domain
A, C, E, G, I	PF07243	Phlebovirus glycoprotein G1 (Phlebovirus_G1)	Phlebovirus glycoprotein G1	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H, J	Glycoprotein	-	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host cellular process regulation of biological process symbiont-mediated suppression of host apoptosis regulation of cellular process symbiont-mediated perturbation of host programmed cell death viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated perturbation of host cellular process regulation of biological process symbiont-mediated suppression of host apoptosis regulation of cellular process symbiont-mediated perturbation of host programmed cell death biological regulation symbiont-mediated suppression of host programmed cell death regulation of killing of cells of another organism disruption of cell in another organism symbiont-mediated perturbation of host process cellular process regulation of cell killing symbiont-mediated perturbation of host apoptosis disruption of anatomical structure in another organism modulation of process of another organism killing of cells of another organism cell killing virion attachment to host cell receptor-mediated virion attachment to host cell adhesion of symbiont to host cell entry receptor-mediated virion attachment to host cell adhesion of symbiont to host	cellular anatomical structure membrane virion component virion membrane host cellular component host intracellular membrane-bounded organelle host intracellular part host cell membrane other organism part host cell mitochondrion host cell cytoplasm part host intracellular organelle host organelle outer membrane host cell cytoplasm cellular anatomical structure membrane virion component virion membrane host cellular component host intracellular membrane-bounded organelle host intracellular part host cell membrane other organism part host cell mitochondrion host cell cytoplasm part host intracellular organelle host organelle outer membrane host cell cytoplasm host cell part host cell mitochondrial envelope host intracellular region host cell mitochondrial outer membrane host cell mitochondrial membrane host outer membrane host cell endoplasmic reticulum host cell endomembrane system host cell endoplasmic reticulum membrane host cell Golgi membrane host cell Golgi apparatus
A, C, E, G, I	Glycoprotein	-	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion attachment to host cell receptor-mediated virion attachment to host cell adhesion of symbiont to host cell entry receptor-mediated virion attachment to host cell adhesion of symbiont to host	cellular anatomical structure membrane virion component virion membrane host cellular component host intracellular membrane-bounded organelle host intracellular part host cell membrane other organism part host cell mitochondrion host cell cytoplasm part host intracellular organelle host organelle outer membrane host cell cytoplasm cellular anatomical structure membrane virion component virion membrane host cellular component host intracellular membrane-bounded organelle host intracellular part host cell membrane other organism part host cell mitochondrion host cell cytoplasm part host intracellular organelle host organelle outer membrane host cell cytoplasm host cell part host cell mitochondrial envelope host intracellular region host cell mitochondrial outer membrane host cell mitochondrial membrane host outer membrane host cell endoplasmic reticulum host cell endomembrane system host cell endoplasmic reticulum membrane host cell Golgi membrane host cell Golgi apparatus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H, J	IPR009879	Phlebovirus nonstructural NS-M	Domain
B, D, F, H, J	IPR009878	Phlebovirus glycoprotein G2, fusion domain	Domain
B, D, F, H, J	IPR010826	Phlebovirus glycoprotein G1	Domain
B, D, F, H, J	IPR016404	M polyprotein precursor, phlebovirus	Family
B, D, F, H, J	IPR043603	Phlebovirus glycoprotein G2, C-terminal domain	Domain
A, C, E, G, I	IPR009879	Phlebovirus nonstructural NS-M	Domain
A, C, E, G, I	IPR009878	Phlebovirus glycoprotein G2, fusion domain	Domain
A, C, E, G, I	IPR010826	Phlebovirus glycoprotein G1	Domain
A, C, E, G, I	IPR016404	M polyprotein precursor, phlebovirus	Family
A, C, E, G, I	IPR043603	Phlebovirus glycoprotein G2, C-terminal domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.