6HWX
Mature MLV capsid hexamer structure in intact virus particles
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Retrovirus capsid protein N-terminal core domain | 8042802 | 3000745 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Retrovirus capsid protein N-terminal core domain | 8042802 | 3000745 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Retrovirus capsid protein N-terminal core domain | 8042802 | 3000745 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02093 | e6hwxA2 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein-C (From Topology) | T: Retrovirus capsid protein-C | F: PF02093 | ECOD (1.6) |
A | PF02093 | e6hwxA1 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein N-terminal domain (From Topology) | T: Retrovirus capsid protein N-terminal domain | F: PF02093 | ECOD (1.6) |
B | PF02093 | e6hwxB2 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein-C (From Topology) | T: Retrovirus capsid protein-C | F: PF02093 | ECOD (1.6) |
B | PF02093 | e6hwxB1 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein N-terminal domain (From Topology) | T: Retrovirus capsid protein N-terminal domain | F: PF02093 | ECOD (1.6) |
C | PF02093 | e6hwxC2 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein-C (From Topology) | T: Retrovirus capsid protein-C | F: PF02093 | ECOD (1.6) |
C | PF02093 | e6hwxC1 | A: alpha bundles | X: Retrovirus capsid protein | H: Retrovirus capsid protein N-terminal domain (From Topology) | T: Retrovirus capsid protein N-terminal domain | F: PF02093 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02093 | Gag P30 core shell protein (Gag_p30) | Gag P30 core shell protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036875 | Zinc finger, CCHC-type superfamily | Homologous Superfamily | |
IPR000840 | Gamma-retroviral matrix protein | Domain | |
IPR001878 | Zinc finger, CCHC-type | Domain | |
IPR008919 | Retrovirus capsid, N-terminal | Homologous Superfamily | |
IPR010999 | Retroviral matrix protein | Homologous Superfamily | |
IPR036946 | Gamma-retroviral matrix domain superfamily | Homologous Superfamily | |
IPR002079 | Gag polyprotein, inner coat protein p12 | Domain | |
IPR003036 | Core shell protein Gag P30 | Domain |