6KMW
Structure of PSI from H. hongdechloris grown under white light condition
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
I [auth bA] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8096594 | 3000850 | SCOP2B (2022-06-29) |
A [auth aA] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8096594 | 3000850 | SCOP2B (2022-06-29) |
Q [auth cA] | SCOP2 Family | Photosystem I subunits PsaA/PsaB | 8096593 | 4002118 | SCOP2 (2022-06-29) |
Q [auth cA] | SCOP2 Superfamily | Photosystem I subunits PsaA/PsaB | 8096594 | 3000850 | SCOP2 (2022-06-29) |
B [auth aB] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8093856 | 3000850 | SCOP2B (2022-06-29) |
J [auth bB] | SCOP2 Family | Photosystem I subunits PsaA/PsaB | 8093855 | 4002118 | SCOP2 (2022-06-29) |
J [auth bB] | SCOP2 Superfamily | Photosystem I subunits PsaA/PsaB | 8093856 | 3000850 | SCOP2 (2022-06-29) |
R [auth cB] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8093856 | 3000850 | SCOP2B (2022-06-29) |
S [auth cC] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8093704 | 3000020 | SCOP2B (2022-06-29) |
C [auth aC] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8093704 | 3000020 | SCOP2B (2022-06-29) |
K [auth bC] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8093704 | 3000020 | SCOP2B (2022-06-29) |
E [auth aE] | SCOP2B Superfamily | Electron transport accessory proteins | 8093956 | 3000325 | SCOP2B (2022-06-29) |
M [auth bE] | SCOP2B Superfamily | Electron transport accessory proteins | 8093956 | 3000325 | SCOP2B (2022-06-29) |
U [auth cE] | SCOP2B Superfamily | Electron transport accessory proteins | 8093956 | 3000325 | SCOP2B (2022-06-29) |
F [auth aI] | SCOP2 Family | Subunit VIII of photosystem I reaction centre PsaI | 8093993 | 4002098 | SCOP2 (2022-06-29) |
F [auth aI] | SCOP2 Superfamily | Subunit VIII of photosystem I reaction centre PsaI | 8093994 | 3000819 | SCOP2 (2022-06-29) |
N [auth bI] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre PsaI | 8093994 | 3000819 | SCOP2B (2022-06-29) |
V [auth cI] | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre PsaI | 8093994 | 3000819 | SCOP2B (2022-06-29) |
G [auth aL] | SCOP2 Family | Photosystem I reaction center subunit XI PsaL | 8094127 | 4002135 | SCOP2 (2022-06-29) |
G [auth aL] | SCOP2 Superfamily | Photosystem I reaction center subunit XI PsaL | 8094128 | 3000870 | SCOP2 (2022-06-29) |
O [auth bL] | SCOP2B Superfamily | Photosystem I reaction center subunit XI PsaL | 8094128 | 3000870 | SCOP2B (2022-06-29) |
W [auth cL] | SCOP2B Superfamily | Photosystem I reaction center subunit XI PsaL | 8094128 | 3000870 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
I [auth bA] | PF00223 | e6kmwbA2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
I [auth bA] | PF00223 | e6kmwbA1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
A [auth aA] | PF00223 | e6kmwaA1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
A [auth aA] | PF00223 | e6kmwaA2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
Q [auth cA] | PF00223 | e6kmwcA2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
Q [auth cA] | PF00223 | e6kmwcA1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
B [auth aB] | PF00223 | e6kmwaB2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
B [auth aB] | PF00223 | e6kmwaB1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
J [auth bB] | PF00223 | e6kmwbB1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
J [auth bB] | PF00223 | e6kmwbB2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
R [auth cB] | PF00223 | e6kmwcB2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PF00223 | ECOD (1.6) |
R [auth cB] | PF00223 | e6kmwcB1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PF00223 | ECOD (1.6) |
S [auth cC] | PF00037 | e6kmwcC1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PF00037 | ECOD (1.6) |
C [auth aC] | PF00037 | e6kmwaC1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PF00037 | ECOD (1.6) |
K [auth bC] | PF00037 | e6kmwbC1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: PF00037 | ECOD (1.6) |
D [auth aD] | PF02531 | e6kmwaD1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PF02531 | ECOD (1.6) |
T [auth cD] | PF02531 | e6kmwcD1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PF02531 | ECOD (1.6) |
L [auth bD] | PF02531 | e6kmwbD1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PF02531 | ECOD (1.6) |
E [auth aE] | PF02427 | e6kmwaE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF02427 | ECOD (1.6) |
M [auth bE] | PF02427 | e6kmwbE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF02427 | ECOD (1.6) |
U [auth cE] | PF02427 | e6kmwcE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF02427 | ECOD (1.6) |
F [auth aI] | PF00796 | e6kmwaI1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PF00796 | ECOD (1.6) |
N [auth bI] | PF00796 | e6kmwbI1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PF00796 | ECOD (1.6) |
V [auth cI] | PF00796 | e6kmwcI1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PF00796 | ECOD (1.6) |
G [auth aL] | PF02605 | e6kmwaL1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PF02605 | ECOD (1.6) |
O [auth bL] | PF02605 | e6kmwbL1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PF02605 | ECOD (1.6) |
W [auth cL] | PF02605 | e6kmwcL1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PF02605 | ECOD (1.6) |
H [auth aM] | PF07465 | e6kmwaM1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PF07465 | ECOD (1.6) |
X [auth cM] | PF07465 | e6kmwcM1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PF07465 | ECOD (1.6) |
P [auth bM] | PF07465 | e6kmwbM1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PF07465 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth aA], I [auth bA], Q [auth cA] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
B [auth aB], J [auth bB], R [auth cB] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
C [auth aC], K [auth bC], S [auth cC] | PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain |
D [auth aD], L [auth bD], T [auth cD] | PF02531 | PsaD (PsaD) | PsaD | - | Family |
E [auth aE], M [auth bE], U [auth cE] | PF02427 | Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE) | Photosystem I reaction centre subunit IV / PsaE | PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. | Domain |
F [auth aI], N [auth bI], V [auth cI] | PF00796 | Photosystem I reaction centre subunit VIII (PSI_8) | Photosystem I reaction centre subunit VIII | - | Family |
G [auth aL], O [auth bL], W [auth cL] | PF02605 | Photosystem I reaction centre subunit XI (PsaL) | Photosystem I reaction centre subunit XI | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Photosystems | Photosystem I |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Photosystems | Photosystem I grown under white light conditions |