6KMW

Structure of PSI from H. hongdechloris grown under white light condition


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth bA]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB8096594 3000850 SCOP2B (2022-06-29)
A [auth aA]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB8096594 3000850 SCOP2B (2022-06-29)
Q [auth cA]SCOP2 FamilyPhotosystem I subunits PsaA/PsaB8096593 4002118 SCOP2 (2022-06-29)
Q [auth cA]SCOP2 SuperfamilyPhotosystem I subunits PsaA/PsaB8096594 3000850 SCOP2 (2022-06-29)
B [auth aB]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB8093856 3000850 SCOP2B (2022-06-29)
J [auth bB]SCOP2 FamilyPhotosystem I subunits PsaA/PsaB8093855 4002118 SCOP2 (2022-06-29)
J [auth bB]SCOP2 SuperfamilyPhotosystem I subunits PsaA/PsaB8093856 3000850 SCOP2 (2022-06-29)
R [auth cB]SCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB8093856 3000850 SCOP2B (2022-06-29)
S [auth cC]SCOP2B Superfamily4Fe-4S ferredoxins8093704 3000020 SCOP2B (2022-06-29)
C [auth aC]SCOP2B Superfamily4Fe-4S ferredoxins8093704 3000020 SCOP2B (2022-06-29)
K [auth bC]SCOP2B Superfamily4Fe-4S ferredoxins8093704 3000020 SCOP2B (2022-06-29)
E [auth aE]SCOP2B SuperfamilyElectron transport accessory proteins8093956 3000325 SCOP2B (2022-06-29)
M [auth bE]SCOP2B SuperfamilyElectron transport accessory proteins8093956 3000325 SCOP2B (2022-06-29)
U [auth cE]SCOP2B SuperfamilyElectron transport accessory proteins8093956 3000325 SCOP2B (2022-06-29)
F [auth aI]SCOP2 FamilySubunit VIII of photosystem I reaction centre PsaI8093993 4002098 SCOP2 (2022-06-29)
F [auth aI]SCOP2 SuperfamilySubunit VIII of photosystem I reaction centre PsaI8093994 3000819 SCOP2 (2022-06-29)
N [auth bI]SCOP2B SuperfamilySubunit VIII of photosystem I reaction centre PsaI8093994 3000819 SCOP2B (2022-06-29)
V [auth cI]SCOP2B SuperfamilySubunit VIII of photosystem I reaction centre PsaI8093994 3000819 SCOP2B (2022-06-29)
G [auth aL]SCOP2 FamilyPhotosystem I reaction center subunit XI PsaL8094127 4002135 SCOP2 (2022-06-29)
G [auth aL]SCOP2 SuperfamilyPhotosystem I reaction center subunit XI PsaL8094128 3000870 SCOP2 (2022-06-29)
O [auth bL]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI PsaL8094128 3000870 SCOP2B (2022-06-29)
W [auth cL]SCOP2B SuperfamilyPhotosystem I reaction center subunit XI PsaL8094128 3000870 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth bA]PF00223e6kmwbA2 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
I [auth bA]PF00223e6kmwbA1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
A [auth aA]PF00223e6kmwaA1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
A [auth aA]PF00223e6kmwaA2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
Q [auth cA]PF00223e6kmwcA2 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
Q [auth cA]PF00223e6kmwcA1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
B [auth aB]PF00223e6kmwaB2 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
B [auth aB]PF00223e6kmwaB1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
J [auth bB]PF00223e6kmwbB1 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
J [auth bB]PF00223e6kmwbB2 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
R [auth cB]PF00223e6kmwcB2 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PF00223ECOD (1.6)
R [auth cB]PF00223e6kmwcB1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PF00223ECOD (1.6)
S [auth cC]PF00037e6kmwcC1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: PF00037ECOD (1.6)
C [auth aC]PF00037e6kmwaC1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: PF00037ECOD (1.6)
K [auth bC]PF00037e6kmwbC1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: PF00037ECOD (1.6)
D [auth aD]PF02531e6kmwaD1 A: a+b two layersX: Photosystem I subunit PsaD (From Topology)H: Photosystem I subunit PsaD (From Topology)T: Photosystem I subunit PsaDF: PF02531ECOD (1.6)
T [auth cD]PF02531e6kmwcD1 A: a+b two layersX: Photosystem I subunit PsaD (From Topology)H: Photosystem I subunit PsaD (From Topology)T: Photosystem I subunit PsaDF: PF02531ECOD (1.6)
L [auth bD]PF02531e6kmwbD1 A: a+b two layersX: Photosystem I subunit PsaD (From Topology)H: Photosystem I subunit PsaD (From Topology)T: Photosystem I subunit PsaDF: PF02531ECOD (1.6)
E [auth aE]PF02427e6kmwaE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF02427ECOD (1.6)
M [auth bE]PF02427e6kmwbE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF02427ECOD (1.6)
U [auth cE]PF02427e6kmwcE1 A: beta barrelsX: SH3H: SH3T: SH3F: PF02427ECOD (1.6)
F [auth aI]PF00796e6kmwaI1 A: extended segmentsX: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)T: Subunit VIII of photosystem I reaction centre, PsaIF: PF00796ECOD (1.6)
N [auth bI]PF00796e6kmwbI1 A: extended segmentsX: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)T: Subunit VIII of photosystem I reaction centre, PsaIF: PF00796ECOD (1.6)
V [auth cI]PF00796e6kmwcI1 A: extended segmentsX: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology)T: Subunit VIII of photosystem I reaction centre, PsaIF: PF00796ECOD (1.6)
G [auth aL]PF02605e6kmwaL1 A: alpha bundlesX: Photosystem I reaction center subunit XI, PsaL (From Topology)H: Photosystem I reaction center subunit XI, PsaL (From Topology)T: Photosystem I reaction center subunit XI, PsaLF: PF02605ECOD (1.6)
O [auth bL]PF02605e6kmwbL1 A: alpha bundlesX: Photosystem I reaction center subunit XI, PsaL (From Topology)H: Photosystem I reaction center subunit XI, PsaL (From Topology)T: Photosystem I reaction center subunit XI, PsaLF: PF02605ECOD (1.6)
W [auth cL]PF02605e6kmwcL1 A: alpha bundlesX: Photosystem I reaction center subunit XI, PsaL (From Topology)H: Photosystem I reaction center subunit XI, PsaL (From Topology)T: Photosystem I reaction center subunit XI, PsaLF: PF02605ECOD (1.6)
H [auth aM]PF07465e6kmwaM1 A: extended segmentsX: Subunit XII of photosystem I reaction centre, PsaM (From Topology)H: Subunit XII of photosystem I reaction centre, PsaM (From Topology)T: Subunit XII of photosystem I reaction centre, PsaMF: PF07465ECOD (1.6)
X [auth cM]PF07465e6kmwcM1 A: extended segmentsX: Subunit XII of photosystem I reaction centre, PsaM (From Topology)H: Subunit XII of photosystem I reaction centre, PsaM (From Topology)T: Subunit XII of photosystem I reaction centre, PsaMF: PF07465ECOD (1.6)
P [auth bM]PF07465e6kmwbM1 A: extended segmentsX: Subunit XII of photosystem I reaction centre, PsaM (From Topology)H: Subunit XII of photosystem I reaction centre, PsaM (From Topology)T: Subunit XII of photosystem I reaction centre, PsaMF: PF07465ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth aA],
I [auth bA],
Q [auth cA]
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
B [auth aB],
J [auth bB],
R [auth cB]
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
C [auth aC],
K [auth bC],
S [auth cC]
PF128384Fe-4S dicluster domain (Fer4_7)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
D [auth aD],
L [auth bD],
T [auth cD]
PF02531PsaD (PsaD)PsaD- Family
E [auth aE],
M [auth bE],
U [auth cE]
PF02427Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE)Photosystem I reaction centre subunit IV / PsaEPsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1].Domain
F [auth aI],
N [auth bI],
V [auth cI]
PF00796Photosystem I reaction centre subunit VIII (PSI_8)Photosystem I reaction centre subunit VIII- Family
G [auth aL],
O [auth bL],
W [auth cL]
PF02605Photosystem I reaction centre subunit XI (PsaL)Photosystem I reaction centre subunit XI- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth aA],
I [auth bA],
Q [auth cA]
Photosystem I P700 chlorophyll a apoprotein A1
B [auth aB],
J [auth bB],
R [auth cB]
Photosystem I P700 chlorophyll a apoprotein A2
C [auth aC],
K [auth bC],
S [auth cC]
Photosystem I iron-sulfur center
D [auth aD],
L [auth bD],
T [auth cD]
Photosystem I reaction center subunit II
E [auth aE],
M [auth bE],
U [auth cE]
Photosystem I reaction center subunit IV
F [auth aI],
N [auth bI],
V [auth cI]
Photosystem I reaction center subunit VIII
G [auth aL],
O [auth bL],
W [auth cL]
Photosystem I reaction center subunit XI
H [auth aM],
P [auth bM],
X [auth cM]
Photosystem I reaction center subunit XII---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth aA],
I [auth bA],
Q [auth cA]
IPR006243Photosystem I PsaAFamily
A [auth aA],
I [auth bA],
Q [auth cA]
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
A [auth aA],
I [auth bA],
Q [auth cA]
IPR001280Photosystem I PsaA/PsaBFamily
A [auth aA],
I [auth bA],
Q [auth cA]
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
B [auth aB],
J [auth bB],
R [auth cB]
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
B [auth aB],
J [auth bB],
R [auth cB]
IPR001280Photosystem I PsaA/PsaBFamily
B [auth aB],
J [auth bB],
R [auth cB]
IPR006244Photosystem I PsaBFamily
B [auth aB],
J [auth bB],
R [auth cB]
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
C [auth aC],
K [auth bC],
S [auth cC]
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
C [auth aC],
K [auth bC],
S [auth cC]
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
C [auth aC],
K [auth bC],
S [auth cC]
IPR017491Photosystem I protein PsaCFamily
D [auth aD],
L [auth bD],
T [auth cD]
IPR003685Photosystem I PsaDFamily
D [auth aD],
L [auth bD],
T [auth cD]
IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
E [auth aE],
M [auth bE],
U [auth cE]
IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
E [auth aE],
M [auth bE],
U [auth cE]
IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
F [auth aI],
N [auth bI],
V [auth cI]
IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
F [auth aI],
N [auth bI],
V [auth cI]
IPR001302Photosystem I reaction centre subunit VIIIFamily
G [auth aL],
O [auth bL],
W [auth cL]
IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
G [auth aL],
O [auth bL],
W [auth cL]
IPR022980Photosystem I, reaction centre subunit XIFamily
G [auth aL],
O [auth bL],
W [auth cL]
IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily