6QFS | pdb_00006qfs

Chargeless variant of the Cellulose-binding domain from Cellulomonas fimi

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d6qfsh1	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	Cellulose-binding domain family II	automated matches	(Cellulomonas fimi ) [TaxId: 1708 ],	SCOPe (2.08)
H	d6qfsh2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Cellulomonas fimi ) [TaxId: 1708 ],	SCOPe (2.08)
G	d6qfsg1	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	Cellulose-binding domain family II	automated matches	(Cellulomonas fimi ) [TaxId: 1708 ],	SCOPe (2.08)
G	d6qfsg2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Cellulomonas fimi ) [TaxId: 1708 ],	SCOPe (2.08)
F	d6qfsf_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	Cellulose-binding domain family II	automated matches	(Cellulomonas fimi ) [TaxId: 1708 ],	SCOPe (2.08)
E	d6qfse_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	Cellulose-binding domain family II	automated matches	(Cellulomonas fimi ) [TaxId: 1708 ],	SCOPe (2.08)
D	d6qfsd1	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	Cellulose-binding domain family II	automated matches	(Cellulomonas fimi ) [TaxId: 1708 ],	SCOPe (2.08)
D	d6qfsd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Cellulomonas fimi ) [TaxId: 1708 ],	SCOPe (2.08)
C	d6qfsc_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	Cellulose-binding domain family II	automated matches	(Cellulomonas fimi ) [TaxId: 1708 ],	SCOPe (2.08)
B	d6qfsb1	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	Cellulose-binding domain family II	automated matches	(Cellulomonas fimi ) [TaxId: 1708 ],	SCOPe (2.08)
B	d6qfsb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Cellulomonas fimi ) [TaxId: 1708 ],	SCOPe (2.08)
A	d6qfsa_	All beta proteins	Common fold of diphtheria toxin/transcription factors/cytochrome f	Carbohydrate-binding domain	Cellulose-binding domain family II	automated matches	(Cellulomonas fimi ) [TaxId: 1708 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	Carbohydrate-binding domain	8040183	3000706	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Carbohydrate-binding domain	8040183	3000706	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Carbohydrate-binding domain	8040183	3000706	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Carbohydrate-binding domain	8040183	3000706	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Carbohydrate-binding domain	8040183	3000706	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Carbohydrate-binding domain	8040183	3000706	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Carbohydrate-binding domain	8040183	3000706	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Carbohydrate-binding domain	8040183	3000706	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	CBM_2	e6qfsH1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: CBM_2	ECOD (1.6)
G	CBM_2	e6qfsG1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: CBM_2	ECOD (1.6)
F	CBM_2	e6qfsF1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: CBM_2	ECOD (1.6)
E	CBM_2	e6qfsE1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: CBM_2	ECOD (1.6)
D	CBM_2	e6qfsD1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: CBM_2	ECOD (1.6)
C	CBM_2	e6qfsC1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: CBM_2	ECOD (1.6)
B	CBM_2	e6qfsB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: CBM_2	ECOD (1.6)
A	CBM_2	e6qfsA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Common fold of diphtheria toxin/transcription factors/cytochrome f	F: CBM_2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	2.60.40.290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
G	2.60.40.290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
F	2.60.40.290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
E	2.60.40.290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
D	2.60.40.290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
C	2.60.40.290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
B	2.60.40.290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)
A	2.60.40.290	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF00553	Cellulose binding domain (CBM_2)	Cellulose binding domain	Two tryptophan residues are involved in cellulose binding. Cellulose binding domain found in bacteria.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Exoglucanase/xylanase	hydrolase activity, acting on glycosyl bonds cellulose 1,4-beta-cellobiosidase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity binding polysaccharide binding carbohydrate binding xylanase activity endo-1,4-beta-xylanase activity	carbohydrate metabolic process xylan catabolic process catabolic process carbohydrate catabolic process hemicellulose catabolic process primary metabolic process macromolecule catabolic process xylan metabolic process polysaccharide metabolic process polysaccharide catabolic process metabolic process cellular process macromolecule metabolic process glucan catabolic process carbohydrate metabolic process xylan catabolic process catabolic process carbohydrate catabolic process hemicellulose catabolic process primary metabolic process macromolecule catabolic process xylan metabolic process polysaccharide metabolic process polysaccharide catabolic process metabolic process cellular process macromolecule metabolic process glucan catabolic process beta-glucan metabolic process glucan metabolic process beta-glucan catabolic process cellulose catabolic process cellulose metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR012291	CBM2, carbohydrate-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR018366	Carbohydrate-binding type-2, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR008965	CBM2/CBM3, carbohydrate-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR031158	Glycosyl hydrolases family 10, active site	Active Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR044846	Glycoside hydrolase family 10	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001000	Glycoside hydrolase family 10 domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001919	Carbohydrate-binding type-2 domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.