6S9J | pdb_00006s9j

Crystal structure of TfR1 mimicry in complex with GP1 from MACV

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth B]	SCOP2B Superfamily	Lassa virus GP1 subunit, receptor binding domain-like	8106408	3002852	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	Lassa virus GP1 subunit, receptor binding domain-like	8106408	3002852	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	Lassa virus GP1 subunit, receptor binding domain-like	8106408	3002852	SCOP2B (2022-06-29)
G [auth H]	SCOP2B Superfamily	Lassa virus GP1 subunit, receptor binding domain-like	8106408	3002852	SCOP2B (2022-06-29)
B [auth A]	SCOP2 Family	PA domain	8094580	4003501	SCOP2 (2022-06-29)
B [auth A]	SCOP2 Superfamily	PA domain	8094581	3000955	SCOP2 (2022-06-29)
D [auth C]	SCOP2B Superfamily	PA domain	8094581	3000955	SCOP2B (2022-06-29)
F [auth E]	SCOP2B Superfamily	PA domain	8094581	3000955	SCOP2B (2022-06-29)
H [auth G]	SCOP2B Superfamily	PA domain	8094581	3000955	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth B]	Arena_glycoprot_1st	e6s9jB1	A: a+b complex topology	X: Envelope glycoprotein GP1 (From Topology)	H: Envelope glycoprotein GP1 (From Topology)	T: Envelope glycoprotein GP1	F: Arena_glycoprot_1st	ECOD (1.6)
C [auth D]	Arena_glycoprot_1st	e6s9jD1	A: a+b complex topology	X: Envelope glycoprotein GP1 (From Topology)	H: Envelope glycoprotein GP1 (From Topology)	T: Envelope glycoprotein GP1	F: Arena_glycoprot_1st	ECOD (1.6)
E [auth F]	Arena_glycoprot_1st	e6s9jF1	A: a+b complex topology	X: Envelope glycoprotein GP1 (From Topology)	H: Envelope glycoprotein GP1 (From Topology)	T: Envelope glycoprotein GP1	F: Arena_glycoprot_1st	ECOD (1.6)
G [auth H]	Arena_glycoprot_1st	e6s9jH1	A: a+b complex topology	X: Envelope glycoprotein GP1 (From Topology)	H: Envelope glycoprotein GP1 (From Topology)	T: Envelope glycoprotein GP1	F: Arena_glycoprot_1st	ECOD (1.6)
B [auth A]	PA	e6s9jA1	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: The swivelling beta/beta/alpha domain (From Topology)	T: The swivelling beta/beta/alpha domain	F: PA	ECOD (1.6)
D [auth C]	PA	e6s9jC1	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: The swivelling beta/beta/alpha domain (From Topology)	T: The swivelling beta/beta/alpha domain	F: PA	ECOD (1.6)
F [auth E]	PA	e6s9jE1	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: The swivelling beta/beta/alpha domain (From Topology)	T: The swivelling beta/beta/alpha domain	F: PA	ECOD (1.6)
H [auth G]	PA	e6s9jG1	A: a/b three-layered sandwiches	X: The swivelling beta/beta/alpha domains	H: The swivelling beta/beta/alpha domain (From Topology)	T: The swivelling beta/beta/alpha domain	F: PA	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B [auth A]	3.50.30.30	Alpha Beta	3-Layer(bba) Sandwich	Glucose Oxidase	domain 1	CATH (utative)
D [auth C]	3.50.30.30	Alpha Beta	3-Layer(bba) Sandwich	Glucose Oxidase	domain 1	CATH (utative)
F [auth E]	3.50.30.30	Alpha Beta	3-Layer(bba) Sandwich	Glucose Oxidase	domain 1	CATH (utative)
H [auth G]	3.50.30.30	Alpha Beta	3-Layer(bba) Sandwich	Glucose Oxidase	domain 1	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth A], D [auth C], F [auth E], H [auth G]	PF02225	PA domain (PA)	PA domain	The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor Swiss:O22925 and members of the RZF family Swiss:O43567. It has been suggested that this domain fo ...	The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor Swiss:O22925 and members of the RZF family Swiss:O43567. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], C [auth D], E [auth F], G [auth H]	Pre-glycoprotein polyprotein GP complex	cation binding ion binding binding metal ion binding small molecule binding	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction import into cell receptor-mediated endocytosis of virus by host cell transport establishment of localization viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction import into cell receptor-mediated endocytosis of virus by host cell transport establishment of localization vesicle-mediated transport localization symbiont entry into host cell symbiont entry into host cellular process endocytosis involved in viral entry into host cell receptor-mediated endocytosis endocytosis	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum host cell membrane host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host cell endomembrane system host intracellular region host cell endoplasmic reticulum membrane virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum host cell membrane host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host cell endomembrane system host intracellular region host cell endoplasmic reticulum membrane virion component viral membrane viral envelope membrane host cell plasma membrane virion membrane host cell Golgi membrane host cell Golgi apparatus
B [auth A], D [auth C], F [auth E], H [auth G]	Transferrin receptor 1,Transferrin receptor 1	transferrin receptor activity cargo receptor activity	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization import into cell receptor internalization transport intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization import into cell receptor internalization transport cellular process receptor-mediated endocytosis endocytosis establishment of localization vesicle-mediated transport protein localization establishment of protein localization cellular localization nitrogen compound transport iron ion transport metal ion transport protein transport cellular macromolecule localization macromolecule localization transferrin transport transition metal ion transport monoatomic ion transport monoatomic cation transport	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane membrane-bounded organelle intracellular anatomical structure pigment granule intracellular vesicle intracellular membrane-bounded organelle intracellular organelle melanosome cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane membrane-bounded organelle intracellular anatomical structure pigment granule intracellular vesicle intracellular membrane-bounded organelle intracellular organelle melanosome cytoplasmic vesicle organelle cytoplasm vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], C [auth D], E [auth F], G [auth H]	IPR043015	Arenavirus glycoprotein, zinc binding domain	Homologous Superfamily
A [auth B], C [auth D], E [auth F], G [auth H]	IPR001535	Arenavirus glycoprotein	Family
B [auth A], D [auth C], F [auth E], H [auth G]	IPR007484	Peptidase M28	Domain
B [auth A], D [auth C], F [auth E], H [auth G]	IPR036757	Transferrin receptor-like, dimerisation domain superfamily	Homologous Superfamily
B [auth A], D [auth C], F [auth E], H [auth G]	IPR039373	Transferrin receptor protein 1/Glutamate carboxypeptidase 2-like	Family
B [auth A], D [auth C], F [auth E], H [auth G]	IPR046450	PA domain superfamily	Homologous Superfamily
B [auth A], D [auth C], F [auth E], H [auth G]	IPR007365	Transferrin receptor-like, dimerisation domain	Domain
B [auth A], D [auth C], F [auth E], H [auth G]	IPR037324	Transferrin receptor protein 1/2, PA domain	Domain
B [auth A], D [auth C], F [auth E], H [auth G]	IPR003137	PA domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.