6SCS | pdb_00006scs

Cell Division Protein SepF in complex with C-terminal domain of FtsZ

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	SepF C-terminal domain-like	8053934	3002249	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	SepF C-terminal domain-like	8053934	3002249	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	SepF C-terminal domain-like	8053934	3002249	SCOP2B (2022-06-29)
D [auth E]	SCOP2B Superfamily	SepF C-terminal domain-like	8053934	3002249	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	SepF	e6scsA1	A: a+b two layers	X: IF3-like	H: SepF C-terminal domain (From Topology)	T: SepF C-terminal domain	F: SepF	ECOD (1.6)
B	SepF	e6scsB1	A: a+b two layers	X: IF3-like	H: SepF C-terminal domain (From Topology)	T: SepF C-terminal domain	F: SepF	ECOD (1.6)
C [auth D]	SepF	e6scsD1	A: a+b two layers	X: IF3-like	H: SepF C-terminal domain (From Topology)	T: SepF C-terminal domain	F: SepF	ECOD (1.6)
D [auth E]	SepF	e6scsE1	A: a+b two layers	X: IF3-like	H: SepF C-terminal domain (From Topology)	T: SepF C-terminal domain	F: SepF	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.110.150	Alpha Beta	2-Layer Sandwich	Translation Initiation Factor IF3	SepF-like protein	CATH (utative)
B	3.30.110.150	Alpha Beta	2-Layer Sandwich	Translation Initiation Factor IF3	SepF-like protein	CATH (utative)
C [auth D]	3.30.110.150	Alpha Beta	2-Layer Sandwich	Translation Initiation Factor IF3	SepF-like protein	CATH (utative)
D [auth E]	3.30.110.150	Alpha Beta	2-Layer Sandwich	Translation Initiation Factor IF3	SepF-like protein	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C [auth D], D [auth E]	PF04472	Cell division protein SepF (SepF)	Cell division protein SepF	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth P], F [auth Q], G [auth R], H [auth S]	Cell division protein FtsZ	binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	cellular component organization cellular component biogenesis protein polymerization cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis cell septum assembly cytokinesis cytokinetic process division septum assembly cell cycle cell division cellular component organization cellular component biogenesis protein polymerization cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis cell septum assembly cytokinesis cytokinetic process division septum assembly cell cycle cell division cell cycle process reproductive process in single-celled organism reproductive process FtsZ-dependent cytokinesis asexual reproduction	cell division site cellular anatomical structure intracellular anatomical structure cytoplasm
A, B, C [auth D], D [auth E]	Cell division protein SepF	cation binding ion binding binding metal ion binding small molecule binding	cell septum assembly cytokinesis cellular component biogenesis cellular component organization cellular component assembly cytokinetic process division septum assembly cellular process cell cycle cell division cellular component organization or biogenesis cell cycle process reproductive process in single-celled organism reproductive process cell septum assembly cytokinesis cellular component biogenesis cellular component organization cellular component assembly cytokinetic process division septum assembly cellular process cell cycle cell division cellular component organization or biogenesis cell cycle process reproductive process in single-celled organism reproductive process FtsZ-dependent cytokinesis asexual reproduction	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth P], F [auth Q], G [auth R], H [auth S]	IPR020805	Cell division protein FtsZ, conserved site	Conserved Site
E [auth P], F [auth Q], G [auth R], H [auth S]	IPR024757	Cell division protein FtsZ, C-terminal	Domain
E [auth P], F [auth Q], G [auth R], H [auth S]	IPR003008	Tubulin/FtsZ, GTPase domain	Domain
E [auth P], F [auth Q], G [auth R], H [auth S]	IPR045061	Tubulin-like protein FtsZ/CetZ	Family
E [auth P], F [auth Q], G [auth R], H [auth S]	IPR008280	Tubulin/FtsZ, C-terminal	Homologous Superfamily
E [auth P], F [auth Q], G [auth R], H [auth S]	IPR037103	Tubulin/FtsZ-like, C-terminal domain	Homologous Superfamily
E [auth P], F [auth Q], G [auth R], H [auth S]	IPR000158	Cell division protein FtsZ	Family
E [auth P], F [auth Q], G [auth R], H [auth S]	IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	Domain
E [auth P], F [auth Q], G [auth R], H [auth S]	IPR036525	Tubulin/FtsZ, GTPase domain superfamily	Homologous Superfamily
A, B, C [auth D], D [auth E]	IPR023052	Cell division protein SepF	Family
A, B, C [auth D], D [auth E]	IPR038594	SepF-like superfamily	Homologous Superfamily
A, B, C [auth D], D [auth E]	IPR007561	Cell division protein SepF/SepF-related	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.