6TY9

In situ structure of BmCPV RNA dependent RNA polymerase at initiation state

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	F_UNCLASSIFIED	e6ty9A1	A: alpha bundles	X: helical bundle domain in reverse transcriptase-like polymerases (From Topology)	H: helical bundle domain in reverse transcriptase-like polymerases (From Topology)	T: helical bundle domain in reverse transcriptase-like polymerases	F: F_UNCLASSIFIED	ECOD (1.6)
A	PF22213	e6ty9A2	A: alpha complex topology	X: C-terminal additional helical subdomain in reovirus polymerase lambda3 (From Topology)	H: C-terminal additional helical subdomain in reovirus polymerase lambda3 (From Topology)	T: C-terminal additional helical subdomain in reovirus polymerase lambda3	F: PF22213	ECOD (1.6)
A	PF22209	e6ty9A4	A: alpha complex topology	X: N-terminal additional helical subdomain in reovirus polymerase lambda3 (From Homology)	H: N-terminal additional helical subdomain in reovirus polymerase lambda3	T: N-terminal additional helical subdomain in reovirus polymerase lambda3	F: PF22209	ECOD (1.6)
A	PF22212	e6ty9A3	A: a+b two layers	X: Alpha-beta plaits	H: Adenylyl and guanylyl cyclase catalytic domain-like	T: Adenylyl and guanylyl cyclase catalytic domain-like	F: PF22212	ECOD (1.6)
B	F_UNCLASSIFIED	e6ty9B1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: F_UNCLASSIFIED	ECOD (1.6)
B	F_UNCLASSIFIED	e6ty9B2	A: mixed a+b and a/b	X: Viral structural protein 4 N-terminal domain (From Topology)	H: Viral structural protein 4 N-terminal domain (From Topology)	T: Viral structural protein 4 N-terminal domain	F: F_UNCLASSIFIED	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF22212	CPV, RNA-directed RNA polymerase, central polymerase domain (CPV_RdRP_pol_dom)	CPV, RNA-directed RNA polymerase, central polymerase domain	This domain is found at the N-terminal of RNA-directed RNA polymerase (RdRP) from Bombyx mori cytoplasmic polyhedrosis virus (BmCPV) and similar sequences from reovirus. This protein adopts a closed cage-like structure consisting of a central polymer ...	This domain is found at the N-terminal of RNA-directed RNA polymerase (RdRP) from Bombyx mori cytoplasmic polyhedrosis virus (BmCPV) and similar sequences from reovirus. This protein adopts a closed cage-like structure consisting of a central polymerase domain (this entry) sandwiched between N-terminal and C-terminal bracelet domains. This domain adopts the classical 'right-handed' polymerase architecture that includes fingers, palm, and thumb subdomains [1-5].	Domain
A	PF22213	CPV, RNA-directed RNA polymerase, C-terminal (CPV_RdRP_C)	CPV, RNA-directed RNA polymerase, C-terminal	This domain is found at the C-terminal of RNA-directed RNA polymerase (RdRP) from Bombyx mori cytoplasmic polyhedrosis virus (BmCPV) and similar sequences from reovirus. This protein adopts a closed cage-like structure consisting of a central polymer ...	This domain is found at the C-terminal of RNA-directed RNA polymerase (RdRP) from Bombyx mori cytoplasmic polyhedrosis virus (BmCPV) and similar sequences from reovirus. This protein adopts a closed cage-like structure consisting of a central polymerase domain sandwiched between N-terminal and C-terminal bracelet domains. This domain adopts a predominantly alpha-helical configuration [1-5].	Domain
A	PF22209	CPV, RNA-directed RNA polymerase, N-terminal (CPV_RdRP_N)	CPV, RNA-directed RNA polymerase, N-terminal	This domain is found at the N-terminal of RNA-directed RNA polymerase (RdRP) from Bombyx mori cytoplasmic polyhedrosis virus (BmCPV) and similar sequences from reovirus. This protein adopts a closed cage-like structure consisting of a central polymer ...	This domain is found at the N-terminal of RNA-directed RNA polymerase (RdRP) from Bombyx mori cytoplasmic polyhedrosis virus (BmCPV) and similar sequences from reovirus. This protein adopts a closed cage-like structure consisting of a central polymerase domain sandwiched between N-terminal and C-terminal bracelet domains. This domain adopts a predominantly alpha-helical configuration [1-5].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	RNA-dependent RNA Polymerase	5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity RNA-dependent RNA polymerase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups RNA binding binding organic cyclic compound binding nucleic acid binding	viral genome replication viral process viral life cycle	-
B	Viral structural protein 4	-	-	-
C [auth M]	Transcript	-	-	-
D [auth N]	Non-template RNA (5'-D((GTA))-R(PGPUPAPAPUPUPUPUPUPUPUPUPUPUPUPUPUP*U)-3')	-	-	-
E [auth T]	Template RNA (5'-R(PAPAPAPAPAPAPAPAPAPAPAPAPAPAPUPUPAPCP*U)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR007097	RNA-directed RNA polymerase, reovirus	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.