50S subunit of 70S Ribosome Enterococcus faecalis MultiBody refinement
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
J [auth N] | SCOP2 Family | Ribosomal protein L16p | 8103465 | 4003717 | SCOP2 (2022-06-29) |
J [auth N] | SCOP2 Superfamily | Ribosomal protein L16p/L10e | 8103466 | 3000884 | SCOP2 (2022-06-29) |
W [auth 2] | SCOP2 Family | Ribosomal protein L32p | 8103429 | 4000508 | SCOP2 (2022-06-29) |
W [auth 2] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8103430 | 3001320 | SCOP2 (2022-06-29) |
I [auth M] | SCOP2 Family | Ribosomal proteins L15p and L18e | 8103445 | 4003555 | SCOP2 (2022-06-29) |
I [auth M] | SCOP2 Superfamily | Ribosomal proteins L15p and L18e | 8103446 | 3001045 | SCOP2 (2022-06-29) |
H [auth L] | SCOP2 Family | Ribosomal protein L14 | 8103459 | 4001826 | SCOP2 (2022-06-29) |
H [auth L] | SCOP2 Superfamily | 50S Ribosomal protein L14-like | 8103460 | 3000433 | SCOP2 (2022-06-29) |
G [auth K] | SCOP2B Superfamily | Ribosomal protein L13 | 8096498 | 3001134 | SCOP2B (2022-06-29) |
E [auth F] | SCOP2 Family | Ribosomal protein L5 | 8103455 | 4001498 | SCOP2 (2022-06-29) |
E [auth F] | SCOP2 Superfamily | RL5-like | 8103456 | 3001709 | SCOP2 (2022-06-29) |
D [auth E] | SCOP2 Family | Ribosomal protein L4 | 8103473 | 4003628 | SCOP2 (2022-06-29) |
D [auth E] | SCOP2 Superfamily | Ribosomal protein L4 | 8103474 | 3001146 | SCOP2 (2022-06-29) |
C [auth D] | SCOP2 Family | Ribosomal protein L3 | 8103475 | 4002103 | SCOP2 (2022-06-29) |
C [auth D] | SCOP2 Superfamily | Translational proteins | 8103476 | 3000811 | SCOP2 (2022-06-29) |
AA [auth 6] | SCOP2 Family | Ribosomal protein L36 | 8103443 | 4003715 | SCOP2 (2022-06-29) |
AA [auth 6] | SCOP2 Superfamily | Ribosomal protein L36 | 8103444 | 3001346 | SCOP2 (2022-06-29) |
Z [auth 5] | SCOP2 Family | Ribosomal protein L35p | 8103437 | 4003406 | SCOP2 (2022-06-29) |
Z [auth 5] | SCOP2 Superfamily | L35p-like | 8103438 | 3000790 | SCOP2 (2022-06-29) |
X [auth 3] | SCOP2 Family | Ribosomal protein L33p | 8103391 | 4000511 | SCOP2 (2022-06-29) |
X [auth 3] | SCOP2 Superfamily | Zn-binding ribosomal proteins | 8103392 | 3001320 | SCOP2 (2022-06-29) |
V [auth 0] | SCOP2 Family | Ribosomal protein L30p/L7e | 8103447 | 4001360 | SCOP2 (2022-06-29) |
V [auth 0] | SCOP2 Superfamily | Ribosomal protein L30p/L7e | 8103448 | 3001378 | SCOP2 (2022-06-29) |
U [auth Z] | SCOP2 Family | Ribosomal protein L29 (L29p) | 8103463 | 4000600 | SCOP2 (2022-06-29) |
U [auth Z] | SCOP2 Superfamily | Ribosomal protein L29 (L29p) | 8103464 | 3000713 | SCOP2 (2022-06-29) |
T [auth Y] | SCOP2 Family | Ribosomal protein L28 | 8103419 | 4003961 | SCOP2 (2022-06-29) |
T [auth Y] | SCOP2 Superfamily | L28p-like | 8103420 | 3001966 | SCOP2 (2022-06-29) |
S [auth X] | SCOP2 Family | Ribosomal L27 protein | 8103431 | 4001900 | SCOP2 (2022-06-29) |
S [auth X] | SCOP2 Superfamily | Ribosomal L27 protein-like | 8103432 | 3000539 | SCOP2 (2022-06-29) |
R [auth V] | SCOP2 Family | Ribosomal proteins L24p and L21e | 8103457 | 4001752 | SCOP2 (2022-06-29) |
R [auth V] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8103458 | 3000334 | SCOP2 (2022-06-29) |
Q [auth U] | SCOP2 Family | L23p | 8103471 | 4000943 | SCOP2 (2022-06-29) |
Q [auth U] | SCOP2 Superfamily | Ribosomal proteins S24e, L23 and L15e | 8103472 | 3000210 | SCOP2 (2022-06-29) |
P [auth T] | SCOP2 Family | Ribosomal protein L22 | 8103467 | 4001212 | SCOP2 (2022-06-29) |
P [auth T] | SCOP2 Superfamily | Ribosomal protein L22 | 8103468 | 3001078 | SCOP2 (2022-06-29) |
O [auth S] | SCOP2 Family | Ribosomal protein l21p | 8103433 | 4001630 | SCOP2 (2022-06-29) |
O [auth S] | SCOP2 Superfamily | l21p-like | 8103434 | 3002005 | SCOP2 (2022-06-29) |
N [auth R] | SCOP2 Family | Ribosomal protein L20 | 8103435 | 4001930 | SCOP2 (2022-06-29) |
N [auth R] | SCOP2 Superfamily | Ribosomal protein L20 | 8103436 | 3000563 | SCOP2 (2022-06-29) |
M [auth Q] | SCOP2 Family | Ribosomal protein L19 | 8103425 | 4001761 | SCOP2 (2022-06-29) |
M [auth Q] | SCOP2 Superfamily | Translation proteins SH3-like KOW motif containing domain | 8103426 | 3000334 | SCOP2 (2022-06-29) |
L [auth P] | SCOP2 Family | Ribosomal protein L18p and S11 | 8103449 | 4000555 | SCOP2 (2022-06-29) |
L [auth P] | SCOP2 Superfamily | Translational machinery components | 8103450 | 3000571 | SCOP2 (2022-06-29) |
K [auth O] | SCOP2 Family | Prokaryotic ribosomal protein L17 | 8103439 | 4003526 | SCOP2 (2022-06-29) |
K [auth O] | SCOP2 Superfamily | Prokaryotic ribosomal protein L17 | 8103440 | 3000995 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
J [auth N] | Ribosomal_L16 | e6wu9N1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: Ribosomal_L16 | ECOD (1.6) |
W [auth 2] | Ribosomal_L32p | e6wu921 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L32p | ECOD (1.6) |
I [auth M] | Ribosomal_L27A | e6wu9M1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: Ribosomal_L27A | ECOD (1.6) |
H [auth L] | Ribosomal_L14 | e6wu9L1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: Ribosomal_L14 | ECOD (1.6) |
G [auth K] | Ribosomal_L13 | e6wu9K1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: Ribosomal_L13 | ECOD (1.6) |
F [auth G] | Ribosomal_L6 | e6wu9G2 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6 | ECOD (1.6) |
F [auth G] | Ribosomal_L6_1 | e6wu9G1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: Ribosomal_L6_1 | ECOD (1.6) |
E [auth F] | Ribosomal_L5_C | e6wu9F1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: Ribosomal_L5_C | ECOD (1.6) |
D [auth E] | Ribosomal_L4 | e6wu9E1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: Ribosomal_L4 | ECOD (1.6) |
C [auth D] | Ribosomal_L3 | e6wu9D1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: Ribosomal_L3 | ECOD (1.6) |
AA [auth 6] | Ribosomal_L36 | e6wu961 | A: few secondary structure elements | X: Ribosomal protein L36 (From Topology) | H: Ribosomal protein L36 (From Topology) | T: Ribosomal protein L36 | F: Ribosomal_L36 | ECOD (1.6) |
Z [auth 5] | Ribosomal_L35p | e6wu951 | A: a+b two layers | X: Ribosomal protein L35p (From Topology) | H: Ribosomal protein L35p (From Topology) | T: Ribosomal protein L35p | F: Ribosomal_L35p | ECOD (1.6) |
Y [auth 4] | Ribosomal_L34 | e6wu941 | A: extended segments | X: 50S ribosomal protein L34 (From Topology) | H: 50S ribosomal protein L34 (From Topology) | T: 50S ribosomal protein L34 | F: Ribosomal_L34 | ECOD (1.6) |
X [auth 3] | Ribosomal_L33 | e6wu931 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: Ribosomal_L33 | ECOD (1.6) |
V [auth 0] | Ribosomal_L30 | e6wu901 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: Ribosomal_L30 | ECOD (1.6) |
U [auth Z] | Ribosomal_L29 | e6wu9Z1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: Ribosomal_L29 | ECOD (1.6) |
T [auth Y] | Ribosomal_L28 | e6wu9Y1 | A: few secondary structure elements | X: Ribosomal protein bL28-related (From Homology) | H: Ribosomal protein bL28-related | T: Ribosomal protein L28 | F: Ribosomal_L28 | ECOD (1.6) |
S [auth X] | Ribosomal_L27 | e6wu9X1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal L27 protein | F: Ribosomal_L27 | ECOD (1.6) |
R [auth V] | ribosomal_L24_1 | e6wu9V1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: ribosomal_L24_1 | ECOD (1.6) |
Q [auth U] | Ribosomal_L23_2 | e6wu9U1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: Ribosomal_L23_2 | ECOD (1.6) |
P [auth T] | Ribosomal_L22 | e6wu9T1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: Ribosomal_L22 | ECOD (1.6) |
O [auth S] | Ribosomal_L21p | e6wu9S1 | A: beta barrels | X: Ribosomal protein L21p (From Topology) | H: Ribosomal protein L21p (From Topology) | T: Ribosomal protein L21p | F: Ribosomal_L21p | ECOD (1.6) |
N [auth R] | Ribosomal_L20 | e6wu9R1 | A: alpha arrays | X: PABP domain-like | H: Ribosomal protein L20 (From Topology) | T: Ribosomal protein L20 | F: Ribosomal_L20 | ECOD (1.6) |
M [auth Q] | Ribosomal_L19 | e6wu9Q1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: Ribosomal_L19 | ECOD (1.6) |
L [auth P] | Ribosomal_L18p | e6wu9P1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: Ribosomal_L18p | ECOD (1.6) |
K [auth O] | Ribosomal_L17_1 | e6wu9O1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Prokaryotic ribosomal protein L17 (From Topology) | T: Prokaryotic ribosomal protein L17 | F: Ribosomal_L17_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
I [auth M] | 3.100.10.10 | Alpha Beta | Ribosomal Protein L15 | Chain: K | domain 2 | CATH (utative) |
F [auth G] | 3.90.930.12 | Alpha Beta | Alpha-Beta Complex | Outer Surface Protein A | domain 3 | CATH (utative) |
S [auth X] | 2.40.50.100 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | CATH (utative) |