Cryo-EM structure of EcmrR-DNA complex in EcmrR-RPitc-4nt
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C [auth G] | MerR_1 | e6xlkG1 | A: alpha arrays | X: HTH | H: HTH | T: Putative DNA-binding domain | F: MerR_1 | ECOD (1.6) |
C [auth G] | GyrI-like | e6xlkG2 | A: a+b duplicates or obligate multimers | X: Probable bacterial effector-binding domain (From Topology) | H: Probable bacterial effector-binding domain (From Topology) | T: Probable bacterial effector-binding domain | F: GyrI-like | ECOD (1.6) |
D [auth H] | MerR_1 | e6xlkH1 | A: alpha arrays | X: HTH | H: HTH | T: Putative DNA-binding domain | F: MerR_1 | ECOD (1.6) |
D [auth H] | GyrI-like | e6xlkH2 | A: a+b duplicates or obligate multimers | X: Probable bacterial effector-binding domain (From Topology) | H: Probable bacterial effector-binding domain (From Topology) | T: Probable bacterial effector-binding domain | F: GyrI-like | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
C [auth G] | 3.20.80.10 | Alpha Beta | Alpha-Beta Barrel | Multidrug-efflux Transporter 1 Regulator Bmrr | Chain A | CATH (utative) |
D [auth H] | 3.20.80.10 | Alpha Beta | Alpha-Beta Barrel | Multidrug-efflux Transporter 1 Regulator Bmrr | Chain A | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth G], D [auth H] | PF06445 | GyrI-like small molecule binding domain (GyrI-like) | GyrI-like small molecule binding domain | This family contains the small molecule binding domain of a number of different bacterial transcription activators [1]. This family also contains DNA gyrase inhibitors. The GyrI superfamily contains a diad of the SHS2 module, adapted for small-molecu ... | Domain |
C [auth G], D [auth H] | PF13411 | MerR HTH family regulatory protein (MerR_1) | MerR HTH family regulatory protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth N] | synthetic non-template strand DNA (54-MER) | - | - | - |
B [auth T] | synthetic template strand DNA (54-MER) | - | - | - |
C [auth G], D [auth H] | MerR family transcriptional regulator EcmrR | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth G], D [auth H] | IPR009061 | Putative DNA-binding domain superfamily | Homologous Superfamily |
C [auth G], D [auth H] | IPR010499 | Bacterial transcription activator, effector binding | Domain |
C [auth G], D [auth H] | IPR047057 | MerR transcriptional regulator | Family |
C [auth G], D [auth H] | IPR011256 | Regulatory factor, effector binding domain superfamily | Homologous Superfamily |
C [auth G], D [auth H] | IPR029442 | GyrI-like small molecule binding domain | Domain |
C [auth G], D [auth H] | IPR000551 | MerR-type HTH domain | Domain |