High-Resolution Structure Analysis of Antibody V5 and U4 Conformational Epitope on Human Papillomavirus 16
External Resource: Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
C | SCOP2B Superfamily | Group I dsDNA viruses | 8041026 | 3000939 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Group I dsDNA viruses | 8041026 | 3000939 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Group I dsDNA viruses | 8041026 | 3000939 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Group I dsDNA viruses | 8041026 | 3000939 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Group I dsDNA viruses | 8041026 | 3000939 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Group I dsDNA viruses | 8041026 | 3000939 | SCOP2B (2022-06-29) |
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
C | PF00500 | e6bspC1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00500 | ECOD (1.6) |
E | PF00500 | e6bspE1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: PF00500 | ECOD (1.6) |
A | PF07686 | e6bspA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
B | PF07686 | e6bspB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: PF07686 | ECOD (1.6) |
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
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| Fab U4 | VH | Mus musculus (house mouse) | IGHV5-6-5*01, IGHJ2*01, IGHJ2*02, IGHJ2*03 | V-DOMAIN VH | IG | FV-HEAVY_KAPPA | IMGT (202422-0) |
| Fab U4 | V-KAPPA | Mus musculus (house mouse) | IGKV8-30*01, IGKJ5*01 | V-DOMAIN V-KAPPA | IG | FV-HEAVY_KAPPA | IMGT (202422-0) |
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
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| Heavy Chain | IGHV5 | - | major capsid protein l1 | SAbDab (2024-06-07) |
| Light Chain | IGKV8 | Kappa | major capsid protein l1 | SAbDab (2024-06-07) |
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|
| Major capsid protein L1 | | | |
| U4 Heavy chain | - | - | - |
| U4 Light chain | - | - | - |