6FTJ
Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
J | SCOP2B Superfamily | RL5-like | 8073894 | 3001709 | SCOP2B (2022-06-29) |
M [auth N] | SCOP2B Superfamily | Ribosomal proteins S24e L23 and L15e | 8082477 | 3000210 | SCOP2B (2022-06-29) |
O [auth P] | SCOP2B Superfamily | Ribosomal protein L22 | 8097828 | 3001078 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Translational proteins | 8078357 | 3000811 | SCOP2B (2022-06-29) |
T [auth U] | SCOP2B Superfamily | 60S Ribosomal protein L22e | 8061156 | 3002158 | SCOP2B (2022-06-29) |
U [auth V] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8072048 | 3000433 | SCOP2B (2022-06-29) |
W [auth X] | SCOP2B Superfamily | Ribosomal proteins S24e L23 and L15e | 8095966 | 3000210 | SCOP2B (2022-06-29) |
X [auth Y] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076754 | 3000334 | SCOP2B (2022-06-29) |
Y [auth Z] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053047 | 3000334 | SCOP2B (2022-06-29) |
Z [auth a] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8097818 | 3001045 | SCOP2B (2022-06-29) |
AA [auth b] | SCOP2B Superfamily | Ribosomal protein L29e | 8053037 | 3002157 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | 60S ribosomal protein L4 C-terminal domain-like | 8052828 | 3002143 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ribosomal protein L4 | 8052829 | 3001146 | SCOP2B (2022-06-29) |
DA [auth e] | SCOP2B Superfamily | Ribosomal protein L32e | 8102088 | 3000982 | SCOP2B (2022-06-29) |
EA [auth f] | SCOP2B Superfamily | Translational proteins | 8093714 | 3000811 | SCOP2B (2022-06-29) |
FA [auth g] | SCOP2B Superfamily | Ribosomal protein L34e-like | 8053543 | 3002203 | SCOP2B (2022-06-29) |
HA [auth i] | SCOP2B Superfamily | Ribosomal protein L36e | 8053119 | 3002161 | SCOP2B (2022-06-29) |
KA [auth l] | SCOP2B Superfamily | Ribosomal protein L39e | 8095595 | 3001756 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Translational machinery components | 8052886 | 3000571 | SCOP2B (2022-06-29) |
OA [auth p] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8101435 | 3001320 | SCOP2B (2022-06-29) |
VA [auth x] | SCOP2B Superfamily | SecY-like | 8056967 | 3000333 | SCOP2B (2022-06-29) |
WA [auth y] | SCOP2B Superfamily | Protein translocase subunit SecE-like | 8053309 | 3002174 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053102 | 3000334 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ribosomal protein L6e N-terminal domain | 8053101 | 3002160 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8097320 | 3000884 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00181 | e6ftjA1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF00181 | ECOD (1.6) |
A | PF03947 | e6ftjA2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF03947 | ECOD (1.6) |
J | PF00281,PF00673 | e6ftjJ1 | A: a+b two layers | X: Ribosomal protein L5 (From Topology) | H: Ribosomal protein L5 (From Topology) | T: Ribosomal protein L5 | F: PF00281,PF00673 | ECOD (1.6) |
K [auth L] | PF01294 | e6ftjL1 | A: extended segments | X: RPL13 (From Topology) | H: RPL13 (From Topology) | T: RPL13 | F: PF01294 | ECOD (1.6) |
L [auth M] | PF00467,PF01929 | e6ftjM1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF01929 | ECOD (1.6) |
M [auth N] | PF00827 | e6ftjN1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00827 | ECOD (1.6) |
N [auth O] | PF00572 | e6ftjO1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L13 and L16-A (From Topology) | T: Ribosomal protein L13 and L16-A | F: PF00572 | ECOD (1.6) |
O [auth P] | PF00237 | e6ftjP1 | A: a+b two layers | X: Enolase-N/ribosomal protein | H: Ribosomal protein L22 (From Topology) | T: Ribosomal protein L22 | F: PF00237 | ECOD (1.6) |
P [auth Q] | PF17135 | e6ftjQ1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF17135 | ECOD (1.6) |
Q [auth R] | PF01280 | e6ftjR2 | A: alpha arrays | X: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) N-terminal domain | F: PF01280 | ECOD (1.6) |
Q [auth R] | PF01280 | e6ftjR1 | A: alpha bundles | X: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology) | T: Ribosomal protein L19 (L19e) C-terminal domain | F: PF01280 | ECOD (1.6) |
R [auth S] | F_UNCLASSIFIED | e6ftjS2 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: F_UNCLASSIFIED | ECOD (1.6) |
R [auth S] | PF01775 | e6ftjS1 | A: a+b two layers | X: GP2-like | H: RplX-like (From Topology) | T: RplX-like | F: PF01775 | ECOD (1.6) |
S [auth T] | PF01157 | e6ftjT1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01157 | ECOD (1.6) |
B | PF00297 | e6ftjB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF00297 | ECOD (1.6) |
T [auth U] | PF01776 | e6ftjU1 | A: a+b two layers | X: Ribosomal protein L22e (From Topology) | H: Ribosomal protein L22e (From Topology) | T: Ribosomal protein L22e | F: PF01776 | ECOD (1.6) |
U [auth V] | PF00238 | e6ftjV1 | A: beta barrels | X: Ribosomal protein L14-like | H: Ribosomal protein L14-related (From Topology) | T: Ribosomal protein L14-related | F: PF00238 | ECOD (1.6) |
V [auth W] | PF01246 | e6ftjW1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF01246 | ECOD (1.6) |
W [auth X] | PF00276,PF03939 | e6ftjX1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal proteins S24e, L23 and L15e (From Topology) | T: Ribosomal proteins S24e, L23 and L15e | F: PF00276,PF03939 | ECOD (1.6) |
X [auth Y] | PF16906 | e6ftjY1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF16906 | ECOD (1.6) |
Y [auth Z] | PF00467,PF01777 | e6ftjZ1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF00467,PF01777 | ECOD (1.6) |
Z [auth a] | PF00828 | e6ftja1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal proteins L15p and L18e (From Topology) | T: Ribosomal proteins L15p and L18e | F: PF00828 | ECOD (1.6) |
AA [auth b] | PF01779 | e6ftjb1 | A: extended segments | X: RPL29 (From Topology) | H: RPL29 (From Topology) | T: RPL29 | F: PF01779 | ECOD (1.6) |
BA [auth c] | PF01248 | e6ftjc1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
CA [auth d] | PF01198 | e6ftjd1 | A: a+b two layers | X: Ribosomal protein L31e-like | H: Ribosomal protein L31e/gp120 outer domain (From Topology) | T: Ribosomal protein L31e/gp120 outer domain | F: PF01198 | ECOD (1.6) |
C | PF00573 | e6ftjC1 | A: a/b three-layered sandwiches | X: Ribosomal protein L4 (From Topology) | H: Ribosomal protein L4 (From Topology) | T: Ribosomal protein L4 | F: PF00573 | ECOD (1.6) |
C | PF14374 | e6ftjC2 | A: extended segments | X: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology) | H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology) | T: C-terminal helical region in 60S ribosomal protein L4 (L4p) | F: PF14374 | ECOD (1.6) |
DA [auth e] | PF01655 | e6ftje1 | A: a/b three-layered sandwiches | X: Ribosomal protein L13/L15p/L18e/L32e | H: Ribosomal protein L32e (From Topology) | T: Ribosomal protein L32e | F: PF01655 | ECOD (1.6) |
EA [auth f] | PF01247 | e6ftjf1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF01247 | ECOD (1.6) |
FA [auth g] | PF01199 | e6ftjg1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: RPL34 (From Topology) | T: RPL34 | F: PF01199 | ECOD (1.6) |
GA [auth h] | PF00831 | e6ftjh1 | A: alpha bundles | X: Long alpha-hairpin | H: Ribosomal protein L29 (L29p) (From Topology) | T: Ribosomal protein L29 (L29p) | F: PF00831 | ECOD (1.6) |
HA [auth i] | PF01158 | e6ftji1 | A: alpha arrays | X: 60S ribosomal protein rpL36 (L36e) (From Topology) | H: 60S ribosomal protein rpL36 (L36e) (From Topology) | T: 60S ribosomal protein rpL36 (L36e) | F: PF01158 | ECOD (1.6) |
IA [auth j] | PF01907 | e6ftjj1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01907 | ECOD (1.6) |
JA [auth k] | PF01781 | e6ftjk1 | A: a+b two layers | X: SRP9/14-like | H: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology) | T: Signal recognition particle alu RNA binding heterodimer SRP9/14-related | F: PF01781 | ECOD (1.6) |
KA [auth l] | PF00832 | e6ftjl1 | A: extended segments | X: Ribosomal protein L39e (From Topology) | H: Ribosomal protein L39e (From Topology) | T: Ribosomal protein L39e | F: PF00832 | ECOD (1.6) |
LA [auth m] | PF01020 | e6ftjm1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01020 | ECOD (1.6) |
MA [auth n] | PF05162 | e6ftjn1 | A: extended segments | X: Ribosomal protein L41-A (From Topology) | H: Ribosomal protein L41-A (From Topology) | T: Ribosomal protein L41-A | F: PF05162 | ECOD (1.6) |
D | PF14204,PF17144 | e6ftjD1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: PF14204,PF17144 | ECOD (1.6) |
NA [auth o] | PF00935 | e6ftjo1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF00935 | ECOD (1.6) |
OA [auth p] | PF01780 | e6ftjp1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01780 | ECOD (1.6) |
PA [auth r] | PF01778 | e6ftjr1 | A: a+b two layers | X: RPL28 (From Topology) | H: RPL28 (From Topology) | T: RPL28 | F: PF01778 | ECOD (1.6) |
QA [auth s] | PF00466 | e6ftjs2 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein L10-like (From Topology) | T: Ribosomal protein L10-like | F: PF00466 | ECOD (1.6) |
QA [auth s] | PF17777 | e6ftjs1 | A: a+b two layers | X: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology) | H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology) | T: Insertion domain in 60S ribosomal protein rpP0 (L10P) | F: PF17777 | ECOD (1.6) |
RA [auth t] | PF00298 | e6ftjt2 | A: alpha arrays | X: HTH | H: HTH | T: Ribosomal protein L11, C-terminal domain | F: PF00298 | ECOD (1.6) |
RA [auth t] | PF03946 | e6ftjt1 | A: a+b two layers | X: Ribosomal protein L11/L12e N-terminal domain-like | H: Ribosomal protein L11/L12e N-terminal domain (From Topology) | T: Ribosomal protein L11/L12e N-terminal domain | F: PF03946 | ECOD (1.6) |
VA [auth x] | PF00344,PF10559 | e6ftjx1 | A: alpha complex topology | X: Preprotein translocase SecY subunit (From Topology) | H: Preprotein translocase SecY subunit (From Topology) | T: Preprotein translocase SecY subunit | F: PF00344,PF10559 | ECOD (1.6) |
WA [auth y] | PF00584 | e6ftjy1 | A: extended segments | X: Preprotein translocase SecE subunit (From Topology) | H: Preprotein translocase SecE subunit (From Topology) | T: Preprotein translocase SecE subunit | F: PF00584 | ECOD (1.6) |
E | PF01159,PF03868 | e6ftjE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF01159,PF03868 | ECOD (1.6) |
XA [auth z] | PF03911 | e6ftjz1 | A: extended segments | X: Sec-beta subunit (From Topology) | H: Sec-beta subunit (From Topology) | T: Sec-beta subunit | F: PF03911 | ECOD (1.6) |
BB [auth 4] | PF10215 | e6ftj41 | A: extended segments | X: Oligosaccharyltransferase subunit ost4p (From Topology) | H: Oligosaccharyltransferase subunit ost4p (From Topology) | T: Oligosaccharyltransferase subunit ost4p | F: PF10215 | ECOD (1.6) |
CB [auth 5] | PF02516 | e6ftj52 | A: alpha bundles | X: STT3/PglB/AglB transmembrane domain (From Topology) | H: STT3/PglB/AglB transmembrane domain (From Topology) | T: STT3/PglB/AglB transmembrane domain | F: PF02516 | ECOD (1.6) |
CB [auth 5] | PF22627 | e6ftj51 | A: a/b three-layered sandwiches | X: STT3/PglB/AglB core domain (From Topology) | H: STT3/PglB/AglB core domain (From Topology) | T: STT3/PglB/AglB core domain | F: PF22627 | ECOD (1.6) |
F | PF00327,PF08079 | e6ftjF1 | A: a+b two layers | X: Ribosomal protein L30p/L7e (From Topology) | H: Ribosomal protein L30p/L7e (From Topology) | T: Ribosomal protein L30p/L7e | F: PF00327,PF08079 | ECOD (1.6) |
G | PF01248 | e6ftjG1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
H | PF00347 | e6ftjH1 | A: a+b two layers | X: Ribosomal protein L6 (From Topology) | H: Ribosomal protein L6 (From Topology) | T: Ribosomal protein L6 | F: PF00347 | ECOD (1.6) |
I | PF00252 | e6ftjI1 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: Ribosomal protein L10e | F: PF00252 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | - | Domain | |
PF00181 | Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2) | Ribosomal Proteins L2, RNA binding domain | - | Domain | |
PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | - | Family | |
PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | - | Domain | |
PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain | |
K [auth L] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
L [auth M] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
M [auth N] | PF05162 | Ribosomal protein L41 (Ribosomal_L41) | Ribosomal protein L41 | - | Family |
M [auth N] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
N [auth O] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
O [auth P] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
O [auth P] | PF01780 | Ribosomal L37ae protein family (Ribosomal_L37ae) | Ribosomal L37ae protein family | - | Family |
Q [auth R] | PF01778 | Ribosomal L28e protein family (Ribosomal_L28e) | Ribosomal L28e protein family | - | Family |
S [auth T] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
S [auth T] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | - | Domain |
S [auth T] | PF01157 | Ribosomal protein L21e (Ribosomal_L21e) | Ribosomal protein L21e | - | Family |
PF01779 | Ribosomal L29e protein family (Ribosomal_L29e) | Ribosomal L29e protein family | - | Family | |
PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family | |
T [auth U] | PF01776 | Ribosomal L22e protein family (Ribosomal_L22e) | Ribosomal L22e protein family | - | Family |
U [auth V] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | - | Domain |
V [auth W] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | - | Domain |
W [auth X] | PF03939 | Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN) | Ribosomal protein L23, N-terminal domain | - | Family |
W [auth X] | PF10559 | Plug domain of Sec61p (Plug_translocon) | Plug domain of Sec61p | The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side.The plug is unl ... | Domain |
W [auth X] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
W [auth X] | PF00344 | SecY (SecY) | SecY | - | Family |
X [auth Y] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
X [auth Y] | PF00584 | SecE/Sec61-gamma subunits of protein translocation complex (SecE) | SecE/Sec61-gamma subunits of protein translocation complex | - | Family |
X [auth Y] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
Y [auth Z] | PF01777 | Ribosomal L27e protein family (Ribosomal_L27e) | Ribosomal L27e protein family | - | Family |
Y [auth Z] | PF03911 | Sec61beta family (Sec61_beta) | Sec61beta family | - | Family |
Y [auth Z] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
PF14374 | 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) | 60S ribosomal protein L4 C-terminal domain | This family is found at the very C-terminal of 60 ribosomal L4 proteins. | Domain | |
PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family | |
PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family | |
PF03868 | Ribosomal protein L6, N-terminal domain (Ribosomal_L6e_N) | Ribosomal protein L6, N-terminal domain | - | Domain | |
PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family | |
PF01159 | Ribosomal protein L6e (Ribosomal_L6e) | Ribosomal protein L6e | - | Family | |
AB [auth 3] | PF04756 | OST3 / OST6 family, transporter family (OST3_OST6) | OST3 / OST6 family, transporter family | - | Family |
CB [auth 5] | PF02516 | Oligosaccharyl transferase STT3, N-terminal (STT3) | Oligosaccharyl transferase STT3, N-terminal | This entry consists of the oligosaccharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosaccharyl transferase (OTase) complex of proteins and is required for its activity [2]. In eukaryotes, OTase transfers a l ... | Domain |
CB [auth 5] | PF21436 | STT3/PglB/AglB core domain (STT3-PglB_core) | STT3/PglB/AglB core domain | This entry represents the C-terminal core domain found in the oligosaccharyl transferase STT3 subunit and related proteins, such as bacterial PglB and archaeal AlgB. STT3 is part of the oligosccharyl transferase (OTase) complex and required for its a ... | Domain |
PF08079 | Ribosomal L30 N-terminal domain (Ribosomal_L30_N) | Ribosomal L30 N-terminal domain | This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1]. | Domain | |
PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain | |
PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain | |
PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | - | Domain | |
PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family | |
PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | - | Domain | |
PF01158 | Ribosomal protein L36e (Ribosomal_L36e) | Ribosomal protein L36e | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | General secretory pathway (Sec) | Protein translocase |