6YBS
Structure of a human 48S translational initiation complex - head
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth c] | d6ybsc_ | All beta proteins | 7-bladed beta-propeller | WD40 repeat-like | WD40-repeat | Guanine nucleotide-binding protein subunit beta-2-like 1 (GNB2L1 or RACK1) | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
F [auth o] | d6ybso_ | Alpha and beta proteins (a+b) | Ferredoxin-like | RNA-binding domain, RBD, aka RNA recognition motif (RRM) | automated matches | automated matches | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth n] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8063426 | 3000135 | SCOP2B (2022-06-29) |
E [auth h] | SCOP2B Superfamily | Ribosomal protein S10 | 8098806 | 3001336 | SCOP2B (2022-06-29) |
F [auth o] | SCOP2B Superfamily | RNA-binding domain RBD | 8039192 | 3000110 | SCOP2B (2022-06-29) |
I [auth i] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052572 | 3000068 | SCOP2B (2022-06-29) |
N [auth f] | SCOP2B Superfamily | S13-like H2TH domain | 8101555 | 3000053 | SCOP2B (2022-06-29) |
Q [auth Y] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082685 | 3000100 | SCOP2B (2022-06-29) |
K [auth Z] | SCOP2B Superfamily | Prokaryotic type KH domain (KH-domain type II) | 8043545 | 3001043 | SCOP2B (2022-06-29) |
L [auth d] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8089318 | 3000034 | SCOP2B (2022-06-29) |
M [auth e] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8090992 | 3000034 | SCOP2B (2022-06-29) |
O [auth V] | SCOP2B Superfamily | Ribosomal protein S7 | 8066003 | 3000799 | SCOP2B (2022-06-29) |
G [auth a] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8055714 | 3000034 | SCOP2B (2022-06-29) |
H [auth m] | SCOP2B Superfamily | L30e-like | 8063978 | 3001739 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B [auth c] | PF00400 | e6ybsc1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: PF00400 | ECOD (1.6) |
C [auth n] | PF01200 | e6ybsn1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: PF01200 | ECOD (1.6) |
E [auth h] | PF00338 | e6ybsh1 | A: a+b two layers | X: Alpha-beta plaits | H: Ribosomal protein S10 (From Topology) | T: Ribosomal protein S10 | F: PF00338 | ECOD (1.6) |
F [auth o] | PF00076 | e6ybso1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: PF00076 | ECOD (1.6) |
I [auth i] | PF00253 | e6ybsi1 | A: few secondary structure elements | X: Glucocorticoid receptor-like | H: LIM domain-like | T: LIM domain-like | F: PF00253 | ECOD (1.6) |
J [auth b] | PF00203 | e6ybsb1 | A: a+b two layers | X: Ribosomal protein S19 (From Topology) | H: Ribosomal protein S19 (From Topology) | T: Ribosomal protein S19 | F: PF00203 | ECOD (1.6) |
N [auth f] | PF00416 | e6ybsf1 | A: alpha arrays | X: HhH/H2TH | H: H2TH (From Topology) | T: H2TH | F: PF00416 | ECOD (1.6) |
P [auth k] | PF01599 | e6ybsk1 | A: few secondary structure elements | X: Rubredoxin-like | H: Rubredoxin-related | T: Rubredoxin-related | F: PF01599 | ECOD (1.6) |
Q [auth Y] | PF00380 | e6ybsY1 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: PF00380 | ECOD (1.6) |
A [auth x] | PF05091 | e6ybsx1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: PF05091 | ECOD (1.6) |
K [auth Z] | PF00189 | e6ybsZ1 | A: a+b two layers | X: T-fold | H: Ribosomal protein S3-C (From Topology) | T: Ribosomal protein S3-C | F: PF00189 | ECOD (1.6) |
K [auth Z] | PF07650 | e6ybsZ2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: KH-domains | T: Prokaryotic type KH domain (KH-domain type II) | F: PF07650 | ECOD (1.6) |
L [auth d] | PF01090 | e6ybsd1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF01090 | ECOD (1.6) |
M [auth e] | PF03297 | e6ybse1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF03297 | ECOD (1.6) |
O [auth V] | PF00177 | e6ybsV1 | A: alpha arrays | X: Ribosomal protein S7 (From Topology) | H: Ribosomal protein S7 (From Topology) | T: Ribosomal protein S7 | F: PF00177 | ECOD (1.6) |
D [auth X] | PF00833 | e6ybsX1 | A: alpha arrays | X: HTH | H: HTH | T: FF domain | F: PF00833 | ECOD (1.6) |
G [auth a] | PF03501 | e6ybsa1 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: PF03501 | ECOD (1.6) |
H [auth m] | PF01248 | e6ybsm1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: L30e-like (From Topology) | T: L30e-like | F: PF01248 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
Q [auth Y] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
K [auth Z] | PF07650 | KH domain (KH_2) | KH domain | - | Domain |
K [auth Z] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
O [auth V] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
R [auth A] | PF03501 | Plectin/S10 domain (S10_plectin) | Plectin/S10 domain | This presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. | Domain |