7EGJ
SCP promoter-bound TFIID-TFIIA in post TBP-loading state
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Rap30/74 heterodimerisation domain-like | 8054050 | 3000142 | SCOP2B (2022-06-29) |
Q [auth d] | SCOP2B Superfamily | Core histone-like | 8042407 | 3001387 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | Core histone-like | 8042407 | 3001387 | SCOP2B (2022-06-29) |
D [auth E] | SCOP2B Superfamily | Taf5 N-terminal domain-like | 8034920 | 3001495 | SCOP2B (2022-06-29) |
R [auth e] | SCOP2B Superfamily | Taf5 N-terminal domain-like | 8034920 | 3001495 | SCOP2B (2022-06-29) |
E [auth F] | SCOP2B Superfamily | Core histone-like | 8081687 | 3001387 | SCOP2B (2022-06-29) |
S [auth f] | SCOP2B Superfamily | Core histone-like | 8081687 | 3001387 | SCOP2B (2022-06-29) |
F [auth G] | SCOP2B Superfamily | Rap30/74 heterodimerisation domain-like | 8054049 | 3000142 | SCOP2B (2022-06-29) |
G [auth H] | SCOP2B Superfamily | Core histone-like | 8053232 | 3001387 | SCOP2B (2022-06-29) |
U [auth j] | SCOP2B Superfamily | Core histone-like | 8053233 | 3001387 | SCOP2B (2022-06-29) |
I [auth J] | SCOP2B Superfamily | Core histone-like | 8053233 | 3001387 | SCOP2B (2022-06-29) |
W [auth l] | SCOP2B Superfamily | Core histone-like | 8042408 | 3001387 | SCOP2B (2022-06-29) |
J [auth L] | SCOP2B Superfamily | Core histone-like | 8042408 | 3001387 | SCOP2B (2022-06-29) |
K [auth O] | SCOP2B Superfamily | Transcription factor IIA (TFIIA) beta-barrel domain | 8037007 | 3001281 | SCOP2B (2022-06-29) |
K [auth O] | SCOP2B Superfamily | Transcription factor IIA (TFIIA) alpha-helical domain | 8037005 | 3001887 | SCOP2B (2022-06-29) |
L [auth P] | SCOP2B Superfamily | TATA-box binding protein-like | 8036293 | 3000705 | SCOP2B (2022-06-29) |
L [auth P] | SCOP2B Superfamily | TATA-box binding protein-like | 8036295 | 3000705 | SCOP2B (2022-06-29) |
M [auth Q] | SCOP2B Superfamily | Transcription factor IIA (TFIIA) beta-barrel domain | 8037002 | 3001281 | SCOP2B (2022-06-29) |
M [auth Q] | SCOP2B Superfamily | Transcription factor IIA (TFIIA) alpha-helical domain | 8037001 | 3001887 | SCOP2B (2022-06-29) |
P [auth c] | SCOP2B Superfamily | Core histone-like | 8086844 | 3001387 | SCOP2B (2022-06-29) |
V [auth k] | SCOP2B Superfamily | Core histone-like | 8036824 | 3001387 | SCOP2B (2022-06-29) |
X [auth m] | SCOP2B Superfamily | Core histone-like | 8036818 | 3001387 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | F_UNCLASSIFIED | e7egjB3 | A: beta sandwiches | X: Baculovirus p35 protein-related (From Topology) | H: Baculovirus p35 protein-related (From Topology) | T: Baculovirus p35 protein-related | F: F_UNCLASSIFIED | ECOD (1.6) |
B | F_UNCLASSIFIED | e7egjB1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: F_UNCLASSIFIED | ECOD (1.6) |
B | F_UNCLASSIFIED | e7egjB2 | A: mixed a+b and a/b | X: Zincin-like | H: Metalloproteases (zincins) catalytic domain (From Topology) | T: Metalloproteases (zincins) catalytic domain | F: F_UNCLASSIFIED | ECOD (1.6) |
D [auth E] | PF00400 | e7egjE1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 8-bladed | F: PF00400 | ECOD (1.6) |
D [auth E] | PF04494 | e7egjE2 | A: alpha superhelices | X: Taf5 N-terminal domain-like (From Topology) | H: Taf5 N-terminal domain-like (From Topology) | T: Taf5 N-terminal domain-like | F: PF04494 | ECOD (1.6) |
R [auth e] | PF00400 | e7egje1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 8-bladed | F: PF00400 | ECOD (1.6) |
R [auth e] | PF04494 | e7egje2 | A: alpha superhelices | X: Taf5 N-terminal domain-like (From Topology) | H: Taf5 N-terminal domain-like (From Topology) | T: Taf5 N-terminal domain-like | F: PF04494 | ECOD (1.6) |
U [auth j] | PF03540 | e7egjj1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF03540 | ECOD (1.6) |
I [auth J] | PF03540 | e7egjJ1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF03540 | ECOD (1.6) |
J [auth L] | PF03847 | e7egjL1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF03847 | ECOD (1.6) |
K [auth O] | PF02751 | e7egjO1 | A: beta duplicates or obligate multimers | X: Transcription factor IIA (TFIIA), beta-barrel domain (From Topology) | H: Transcription factor IIA (TFIIA), beta-barrel domain (From Topology) | T: Transcription factor IIA (TFIIA), beta-barrel domain | F: PF02751 | ECOD (1.6) |
K [auth O] | PF02268 | e7egjO2 | A: alpha duplicates or obligate multimers | X: TFIIA, alpha-helical domain (From Topology) | H: TFIIA, alpha-helical domain (From Topology) | T: TFIIA, alpha-helical domain | F: PF02268 | ECOD (1.6) |
L [auth P] | PF00352 | e7egjP1 | A: a+b two layers | X: TBP-like | H: TATA-box binding protein-like (From Topology) | T: TATA-box binding protein-like | F: PF00352 | ECOD (1.6) |
M [auth Q] | PF03153 | e7egjQ1 | A: beta duplicates or obligate multimers | X: Transcription factor IIA (TFIIA), beta-barrel domain (From Topology) | H: Transcription factor IIA (TFIIA), beta-barrel domain (From Topology) | T: Transcription factor IIA (TFIIA), beta-barrel domain | F: PF03153 | ECOD (1.6) |
M [auth Q] | PF03153 | e7egjQ2 | A: alpha duplicates or obligate multimers | X: TFIIA, alpha-helical domain (From Topology) | H: TFIIA, alpha-helical domain (From Topology) | T: TFIIA, alpha-helical domain | F: PF03153 | ECOD (1.6) |
V [auth k] | PF04719 | e7egjk1 | A: alpha arrays | X: Histone-like | H: Histone-related | T: Histone | F: PF04719 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12157 | Protein of unknown function (DUF3591) (DUF3591) | Protein of unknown function (DUF3591) | - | Family | |
C [auth D], Q [auth d] | PF05236 | Transcription initiation factor TFIID component TAF4 family (TAF4) | Transcription initiation factor TFIID component TAF4 family | - | Family |
D [auth E], R [auth e] | PF04494 | WD40 associated region in TFIID subunit, NTD2 domain (TFIID_NTD2) | WD40 associated region in TFIID subunit, NTD2 domain | - | Family |
D [auth E], R [auth e] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
E [auth F], S [auth f] | PF07571 | TAF6 C-terminal HEAT repeat domain (TAF6_C) | TAF6 C-terminal HEAT repeat domain | - | Repeat |
E [auth F], S [auth f] | PF02969 | TATA box binding protein associated factor (TAF) (TAF) | TATA box binding protein associated factor (TAF) | TAF proteins adopt a histone-like fold. | Domain |
F [auth G] | PF04658 | TAFII55 protein conserved region (TAFII55_N) | TAFII55 protein conserved region | - | Family |
G [auth H] | PF07524 | Bromodomain associated (Bromo_TP) | Bromodomain associated | This domain is predicted to bind DNA [1] and is often found associated with Pfam:PF00439 and in transcription factors. It has a histone-like fold. | Domain |
G [auth H] | PF10406 | Transcription factor TFIID complex subunit 8 C-term (TAF8_C) | Transcription factor TFIID complex subunit 8 C-term | This is the C-terminal, Delta, part of the TAF8 protein [1]. The N-terminal is generally the histone fold domain, Bromo_TP (Pfam:PF07524). TAF8 is one of the key subunits of the transcription factor for pol II, TFIID. TAF8 is one of the several gener ... | Domain |
H [auth I], T [auth i] | PF02291 | Transcription initiation factor IID, 31kD subunit (TFIID-31kDa) | Transcription initiation factor IID, 31kD subunit | This family represents the N-terminus of the 31kD subunit (42kD in drosophila) of transcription initiation factor IID (TAFII31). TAFII31 binds to p53, and is an essential requirement for p53 mediated transcription activation. | Domain |
I [auth J], U [auth j] | PF03540 | Transcription initiation factor TFIID 23-30kDa subunit (TFIID_30kDa) | Transcription initiation factor TFIID 23-30kDa subunit | - | Family |
J [auth L], W [auth l] | PF03847 | Transcription initiation factor TFIID subunit A (TFIID_20kDa) | Transcription initiation factor TFIID subunit A | - | Domain |
K [auth O] | PF02751 | Transcription initiation factor IIA, gamma subunit (TFIIA_gamma_C) | Transcription initiation factor IIA, gamma subunit | Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIA (TFIIA) is a multimeric protein which facilitates the binding of TFIID to the TATA b ... | Domain |
K [auth O] | PF02268 | Transcription initiation factor IIA, gamma subunit, helical domain (TFIIA_gamma_N) | Transcription initiation factor IIA, gamma subunit, helical domain | Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIA (TFIIA) is a multimeric protein which facilitates the binding of TFIID to the TATA ... | Domain |
L [auth P] | PF00352 | Transcription factor TFIID (or TATA-binding protein, TBP) (TBP) | Transcription factor TFIID (or TATA-binding protein, TBP) | - | Domain |
P [auth c] | PF07524 | Bromodomain associated (Bromo_TP) | Bromodomain associated | This domain is predicted to bind DNA [1] and is often found associated with Pfam:PF00439 and in transcription factors. It has a histone-like fold. | Domain |
V [auth k] | PF04719 | hTAFII28-like protein conserved region (TAFII28) | hTAFII28-like protein conserved region | The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region ... | Domain |
X [auth m] | PF02269 | Transcription initiation factor IID, 18kD subunit (TFIID-18kDa) | Transcription initiation factor IID, 18kD subunit | This family includes the Spt3 yeast transcription factors and the 18kD subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [1] | Domain |