7F3L

Crystal structure of human YBX2 CSD in complex with m5C RNA in space group P62

Present annotations:

Domain Annotation: ECOD Classification
Gene Product Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	CSD	e7f3lA1	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: CSD	ECOD (1.6)

Gene Product Annotation Gene Product Annotation

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Y-box-binding protein 2	DNA binding binding organic cyclic compound binding nucleic acid binding heterocyclic compound binding RNA binding	multicellular organismal process regulation of biological process homeostatic process biological regulation positive regulation of biological process adaptive thermogenesis positive regulation of metabolic process multicellular organismal-level homeostasis regulation of cold-induced thermogenesis cold-induced thermogenesis temperature homeostasis positive regulation of cold-induced thermogenesis positive regulation of multicellular organismal process metabolic process multicellular organismal process regulation of biological process homeostatic process biological regulation positive regulation of biological process adaptive thermogenesis positive regulation of metabolic process multicellular organismal-level homeostasis regulation of cold-induced thermogenesis cold-induced thermogenesis temperature homeostasis positive regulation of cold-induced thermogenesis positive regulation of multicellular organismal process metabolic process regulation of multicellular organismal process regulation of metabolic process developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation reproduction multicellular organism reproduction cellular biosynthetic process RNA metabolic process cellular nitrogen compound biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription transcription by RNA polymerase II organic substance metabolic process heterocycle metabolic process organic substance biosynthetic process nitrogen compound metabolic process cellular metabolic process cellular nitrogen compound metabolic process primary metabolic process nucleobase-containing compound biosynthetic process heterocycle biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process organic cyclic compound metabolic process biosynthetic process aromatic compound biosynthetic process organic cyclic compound biosynthetic process cellular process macromolecule metabolic process cellular aromatic compound metabolic process regulation of biosynthetic process regulation of cellular process regulation of cellular metabolic process regulation of macromolecule metabolic process regulation of cellular biosynthetic process regulation of gene expression regulation of macromolecule biosynthetic process cellular developmental process oogenesis cell development cellular process involved in reproduction in multicellular organism female gamete generation oocyte development cell differentiation anatomical structure development germ cell development oocyte differentiation regulation of amide metabolic process organonitrogen compound biosynthetic process regulation of primary metabolic process regulation of nitrogen compound metabolic process post-transcriptional regulation of gene expression translational attenuation protein metabolic process amide metabolic process organonitrogen compound metabolic process regulation of protein metabolic process amide biosynthetic process translation peptide biosynthetic process regulation of translation peptide metabolic process	intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
B	RNA (5'-R(PCPAPUP(5MC))-3')	none	none	none

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.