7FEB | pdb_00007feb

Cryo-EM structure of the nonameric SsaV cytosolic domain in the context of the InvA-SsaV chimeric protein

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I	FHIPEP_2nd	e7febI4	A: alpha arrays	X: helical domain in flagellar biosynthesis protein flhA (From Topology)	H: helical domain in flagellar biosynthesis protein flhA (From Topology)	T: helical domain in flagellar biosynthesis protein flhA	F: FHIPEP_2nd	ECOD (1.6)
I	F_UNCLASSIFIED	e7febI1	A: a+b two layers	X: ferredoxin-like domain in flagellar biosynthesis protein flhA (From Topology)	H: ferredoxin-like domain in flagellar biosynthesis protein flhA (From Topology)	T: ferredoxin-like domain in flagellar biosynthesis protein flhA	F: F_UNCLASSIFIED	ECOD (1.6)
I	F_UNCLASSIFIED	e7febI3	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: F_UNCLASSIFIED	ECOD (1.6)
I	FHIPEP_3rd	e7febI2	A: a/b three-layered sandwiches	X: a/b domain in flagellar biosynthesis protein flhA (From Topology)	H: a/b domain in flagellar biosynthesis protein flhA (From Topology)	T: a/b domain in flagellar biosynthesis protein flhA	F: FHIPEP_3rd	ECOD (1.6)
H	FHIPEP_2nd	e7febH3	A: alpha arrays	X: helical domain in flagellar biosynthesis protein flhA (From Topology)	H: helical domain in flagellar biosynthesis protein flhA (From Topology)	T: helical domain in flagellar biosynthesis protein flhA	F: FHIPEP_2nd	ECOD (1.6)
H	F_UNCLASSIFIED	e7febH4	A: a+b two layers	X: ferredoxin-like domain in flagellar biosynthesis protein flhA (From Topology)	H: ferredoxin-like domain in flagellar biosynthesis protein flhA (From Topology)	T: ferredoxin-like domain in flagellar biosynthesis protein flhA	F: F_UNCLASSIFIED	ECOD (1.6)
H	F_UNCLASSIFIED	e7febH2	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: F_UNCLASSIFIED	ECOD (1.6)
H	FHIPEP_3rd	e7febH1	A: a/b three-layered sandwiches	X: a/b domain in flagellar biosynthesis protein flhA (From Topology)	H: a/b domain in flagellar biosynthesis protein flhA (From Topology)	T: a/b domain in flagellar biosynthesis protein flhA	F: FHIPEP_3rd	ECOD (1.6)
G	FHIPEP_2nd	e7febG1	A: alpha arrays	X: helical domain in flagellar biosynthesis protein flhA (From Topology)	H: helical domain in flagellar biosynthesis protein flhA (From Topology)	T: helical domain in flagellar biosynthesis protein flhA	F: FHIPEP_2nd	ECOD (1.6)
G	F_UNCLASSIFIED	e7febG3	A: a+b two layers	X: ferredoxin-like domain in flagellar biosynthesis protein flhA (From Topology)	H: ferredoxin-like domain in flagellar biosynthesis protein flhA (From Topology)	T: ferredoxin-like domain in flagellar biosynthesis protein flhA	F: F_UNCLASSIFIED	ECOD (1.6)
G	F_UNCLASSIFIED	e7febG2	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: F_UNCLASSIFIED	ECOD (1.6)
G	FHIPEP_3rd	e7febG4	A: a/b three-layered sandwiches	X: a/b domain in flagellar biosynthesis protein flhA (From Topology)	H: a/b domain in flagellar biosynthesis protein flhA (From Topology)	T: a/b domain in flagellar biosynthesis protein flhA	F: FHIPEP_3rd	ECOD (1.6)
F	FHIPEP_2nd	e7febF4	A: alpha arrays	X: helical domain in flagellar biosynthesis protein flhA (From Topology)	H: helical domain in flagellar biosynthesis protein flhA (From Topology)	T: helical domain in flagellar biosynthesis protein flhA	F: FHIPEP_2nd	ECOD (1.6)
F	F_UNCLASSIFIED	e7febF3	A: a+b two layers	X: ferredoxin-like domain in flagellar biosynthesis protein flhA (From Topology)	H: ferredoxin-like domain in flagellar biosynthesis protein flhA (From Topology)	T: ferredoxin-like domain in flagellar biosynthesis protein flhA	F: F_UNCLASSIFIED	ECOD (1.6)
F	F_UNCLASSIFIED	e7febF2	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: F_UNCLASSIFIED	ECOD (1.6)
F	FHIPEP_3rd	e7febF1	A: a/b three-layered sandwiches	X: a/b domain in flagellar biosynthesis protein flhA (From Topology)	H: a/b domain in flagellar biosynthesis protein flhA (From Topology)	T: a/b domain in flagellar biosynthesis protein flhA	F: FHIPEP_3rd	ECOD (1.6)
E [auth D]	FHIPEP_2nd	e7febD1	A: alpha arrays	X: helical domain in flagellar biosynthesis protein flhA (From Topology)	H: helical domain in flagellar biosynthesis protein flhA (From Topology)	T: helical domain in flagellar biosynthesis protein flhA	F: FHIPEP_2nd	ECOD (1.6)
E [auth D]	F_UNCLASSIFIED	e7febD2	A: a+b two layers	X: ferredoxin-like domain in flagellar biosynthesis protein flhA (From Topology)	H: ferredoxin-like domain in flagellar biosynthesis protein flhA (From Topology)	T: ferredoxin-like domain in flagellar biosynthesis protein flhA	F: F_UNCLASSIFIED	ECOD (1.6)
E [auth D]	F_UNCLASSIFIED	e7febD3	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: F_UNCLASSIFIED	ECOD (1.6)
E [auth D]	FHIPEP_3rd	e7febD4	A: a/b three-layered sandwiches	X: a/b domain in flagellar biosynthesis protein flhA (From Topology)	H: a/b domain in flagellar biosynthesis protein flhA (From Topology)	T: a/b domain in flagellar biosynthesis protein flhA	F: FHIPEP_3rd	ECOD (1.6)
D [auth C]	FHIPEP_2nd	e7febC3	A: alpha arrays	X: helical domain in flagellar biosynthesis protein flhA (From Topology)	H: helical domain in flagellar biosynthesis protein flhA (From Topology)	T: helical domain in flagellar biosynthesis protein flhA	F: FHIPEP_2nd	ECOD (1.6)
D [auth C]	F_UNCLASSIFIED	e7febC2	A: a+b two layers	X: ferredoxin-like domain in flagellar biosynthesis protein flhA (From Topology)	H: ferredoxin-like domain in flagellar biosynthesis protein flhA (From Topology)	T: ferredoxin-like domain in flagellar biosynthesis protein flhA	F: F_UNCLASSIFIED	ECOD (1.6)
D [auth C]	F_UNCLASSIFIED	e7febC4	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: F_UNCLASSIFIED	ECOD (1.6)
D [auth C]	FHIPEP_3rd	e7febC1	A: a/b three-layered sandwiches	X: a/b domain in flagellar biosynthesis protein flhA (From Topology)	H: a/b domain in flagellar biosynthesis protein flhA (From Topology)	T: a/b domain in flagellar biosynthesis protein flhA	F: FHIPEP_3rd	ECOD (1.6)
C [auth B]	FHIPEP_2nd	e7febB2	A: alpha arrays	X: helical domain in flagellar biosynthesis protein flhA (From Topology)	H: helical domain in flagellar biosynthesis protein flhA (From Topology)	T: helical domain in flagellar biosynthesis protein flhA	F: FHIPEP_2nd	ECOD (1.6)
C [auth B]	F_UNCLASSIFIED	e7febB4	A: a+b two layers	X: ferredoxin-like domain in flagellar biosynthesis protein flhA (From Topology)	H: ferredoxin-like domain in flagellar biosynthesis protein flhA (From Topology)	T: ferredoxin-like domain in flagellar biosynthesis protein flhA	F: F_UNCLASSIFIED	ECOD (1.6)
C [auth B]	F_UNCLASSIFIED	e7febB3	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: F_UNCLASSIFIED	ECOD (1.6)
C [auth B]	FHIPEP_3rd	e7febB1	A: a/b three-layered sandwiches	X: a/b domain in flagellar biosynthesis protein flhA (From Topology)	H: a/b domain in flagellar biosynthesis protein flhA (From Topology)	T: a/b domain in flagellar biosynthesis protein flhA	F: FHIPEP_3rd	ECOD (1.6)
B [auth A]	FHIPEP_2nd	e7febA1	A: alpha arrays	X: helical domain in flagellar biosynthesis protein flhA (From Topology)	H: helical domain in flagellar biosynthesis protein flhA (From Topology)	T: helical domain in flagellar biosynthesis protein flhA	F: FHIPEP_2nd	ECOD (1.6)
B [auth A]	F_UNCLASSIFIED	e7febA3	A: a+b two layers	X: ferredoxin-like domain in flagellar biosynthesis protein flhA (From Topology)	H: ferredoxin-like domain in flagellar biosynthesis protein flhA (From Topology)	T: ferredoxin-like domain in flagellar biosynthesis protein flhA	F: F_UNCLASSIFIED	ECOD (1.6)
B [auth A]	F_UNCLASSIFIED	e7febA4	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: F_UNCLASSIFIED	ECOD (1.6)
B [auth A]	FHIPEP_3rd	e7febA2	A: a/b three-layered sandwiches	X: a/b domain in flagellar biosynthesis protein flhA (From Topology)	H: a/b domain in flagellar biosynthesis protein flhA (From Topology)	T: a/b domain in flagellar biosynthesis protein flhA	F: FHIPEP_3rd	ECOD (1.6)
A [auth E]	FHIPEP_2nd	e7febE2	A: alpha arrays	X: helical domain in flagellar biosynthesis protein flhA (From Topology)	H: helical domain in flagellar biosynthesis protein flhA (From Topology)	T: helical domain in flagellar biosynthesis protein flhA	F: FHIPEP_2nd	ECOD (1.6)
A [auth E]	F_UNCLASSIFIED	e7febE3	A: a+b two layers	X: ferredoxin-like domain in flagellar biosynthesis protein flhA (From Topology)	H: ferredoxin-like domain in flagellar biosynthesis protein flhA (From Topology)	T: ferredoxin-like domain in flagellar biosynthesis protein flhA	F: F_UNCLASSIFIED	ECOD (1.6)
A [auth E]	F_UNCLASSIFIED	e7febE1	A: a+b three layers	X: Thioredoxin-like	H: Thioredoxin-like (From Topology)	T: Thioredoxin-like	F: F_UNCLASSIFIED	ECOD (1.6)
A [auth E]	FHIPEP_3rd	e7febE4	A: a/b three-layered sandwiches	X: a/b domain in flagellar biosynthesis protein flhA (From Topology)	H: a/b domain in flagellar biosynthesis protein flhA (From Topology)	T: a/b domain in flagellar biosynthesis protein flhA	F: FHIPEP_3rd	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
I	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
I	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
I	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
H	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
H	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
H	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
G	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
G	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
G	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
F	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
F	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
F	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
E [auth D]	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
E [auth D]	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
E [auth D]	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
D [auth C]	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
D [auth C]	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
D [auth C]	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
C [auth B]	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
C [auth B]	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
C [auth B]	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
B [auth A]	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
B [auth A]	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
B [auth A]	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)
A [auth E]	3.40.30.60	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	FHIPEP family, domain 1	CATH (utative)
A [auth E]	1.10.8.540	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (utative)
A [auth E]	3.40.50.12790	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	FHIPEP family, domain 4	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F, G, H, I	PF00771	FHIPEP family (FHIPEP)	FHIPEP family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F, G, H, I	Secretion system apparatus protein SsaV	-	establishment of protein localization nitrogen compound transport transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization cellular process establishment of protein localization nitrogen compound transport transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization cellular process intracellular protein localization	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F, G, H, I	IPR042194	FHIPEP, domain 1	Homologous Superfamily
A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F, G, H, I	IPR042196	FHIPEP, domain 4	Homologous Superfamily
A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F, G, H, I	IPR001712	Type III secretion system FHIPEP	Family
A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F, G, H, I	IPR042193	FHIPEP, domain 3	Homologous Superfamily
A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F, G, H, I	IPR025505	FHIPEP conserved site	Conserved Site
A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F, G, H, I	IPR006302	Type III secretion protein HrcV	Family

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth E], B [auth A], C [auth B], D [auth C], E [auth D] A [auth E], B [auth A], C [auth B], D [auth C], E [auth D], F, G, H, I	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Type III Secretion Systems	nonameric SsaV cytosolic domain in the context of the InvA-SsaV chimeric protein