The crystal structure of Papain-Like Protease of SARS CoV-2 , C111S mutant, in complex with PLP_Snyder457 inhibitor
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
A | SCOP2B Superfamily | PLpro Zn-binding domain-like | 8092568 | 3002538 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Cysteine proteinases | 8092567 | 3001808 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Cysteine proteinases | 8092567 | 3001808 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ubiquitin-like | 8092569 | 3000157 | SCOP2B (2022-06-29) |
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
A | Viral_protease_N | e7jirA1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Viral_protease_N | ECOD (1.6) |
A | Viral_protease_C | e7jirA2 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Viral_protease_C | ECOD (1.6) |
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
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| Papain-like protease | - RNA helicase activity
- catalytic activity
- helicase activity
- ATP-dependent activity, acting on RNA
- 5'-3' RNA helicase activity
- catalytic activity, acting on RNA
- catalytic activity, acting on a nucleic acid
- ATP-dependent activity
- pyrophosphatase activity
- hydrolase activity
- hydrolase activity, acting on acid anhydrides
- hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
- ATP hydrolysis activity
- ribonucleoside triphosphate phosphatase activity
- cysteine-type deubiquitinase activity
- peptidase activity
- cysteine-type peptidase activity
- ubiquitin-like protein peptidase activity
- deubiquitinase activity
- catalytic activity, acting on a protein
- endopeptidase activity
- cysteine-type endopeptidase activity
- DNA helicase activity
- ATP-dependent activity, acting on DNA
- catalytic activity, acting on DNA
- nuclease activity
- endonuclease activity
- hydrolase activity, acting on ester bonds
- binding
- protein binding
- identical protein binding
- ISG15-specific peptidase activity
- lyase activity
- mRNA (nucleoside-2'-O-)-methyltransferase activity
- methyltransferase activity
- O-methyltransferase activity
- RNA methyltransferase activity
- mRNA methyltransferase activity
- S-adenosylmethionine-dependent methyltransferase activity
- transferase activity
- transferase activity, transferring one-carbon groups
- omega peptidase activity
- protein dimerization activity
- protein homodimerization activity
- RNA-dependent RNA polymerase activity
- transferase activity, transferring phosphorus-containing groups
- nucleotidyltransferase activity
- 5'-3' RNA polymerase activity
- RNA polymerase activity
- nucleic acid binding
- RNA binding
- single-stranded RNA binding
- organic cyclic compound binding
- heterocyclic compound binding
- zinc ion binding
- ion binding
- cation binding
- metal ion binding
- transition metal ion binding
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