7MC9 | pdb_00007mc9

X-RAY STRUCTURE OF PEDV PAPAIN-LIKE PROTEASE 2 bound to UB-PA


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
PSCOP2B SuperfamilyUbiquitin-like 8101457 3000157 SCOP2B (2022-06-29)
NSCOP2B SuperfamilyUbiquitin-like 8101457 3000157 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyUbiquitin-like 8101457 3000157 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyUbiquitin-like 8101457 3000157 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyUbiquitin-like 8101457 3000157 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyUbiquitin-like 8101457 3000157 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyUbiquitin-like 8101457 3000157 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyUbiquitin-like 8101457 3000157 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Pubiquitin_1e7mc9P1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)
Nubiquitin_1e7mc9N1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)
Lubiquitin_1e7mc9L1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)
Jubiquitin_1e7mc9J1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)
Hubiquitin_1e7mc9H1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)
Fubiquitin_1e7mc9F1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)
Dubiquitin_1e7mc9D1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)
Bubiquitin_1e7mc9B1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: ubiquitin_1ECOD (1.6)
OViral_protease_Ce7mc9O1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: Viral_protease_CECOD (1.6)
MViral_protease_Ce7mc9M1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: Viral_protease_CECOD (1.6)
KViral_protease_Ce7mc9K1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: Viral_protease_CECOD (1.6)
IViral_protease_Ce7mc9I1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: Viral_protease_CECOD (1.6)
GViral_protease_Ce7mc9G1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: Viral_protease_CECOD (1.6)
EViral_protease_Ce7mc9E1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: Viral_protease_CECOD (1.6)
CViral_protease_Ce7mc9C1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: Viral_protease_CECOD (1.6)
AViral_protease_Ce7mc9A1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: Viral_protease_CECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
P3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (utative)
N3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (utative)
L3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (utative)
J3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (utative)
H3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (utative)
F3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (utative)
D3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (utative)
B3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (utative)
O1.10.8.1190 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
M1.10.8.1190 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
K1.10.8.1190 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
I1.10.8.1190 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
G1.10.8.1190 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
E1.10.8.1190 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
C1.10.8.1190 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
A1.10.8.1190 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, D, F, H, J
PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
A, C, E, G, I
PF08715Coronavirus papain-like peptidase (CoV_peptidase)Coronavirus papain-like peptidase- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B, D, F, H, J
Ubiquitin
A, C, E, G, I
3C-like proteinase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B, D, F, H, J
IPR019954Ubiquitin conserved siteConserved Site
B, D, F, H, J
IPR050158Ubiquitin and ubiquitin-likeFamily
B, D, F, H, J
IPR000626Ubiquitin-like domainDomain
B, D, F, H, J
IPR019956Ubiquitin domainDomain
B, D, F, H, J
IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
A, C, E, G, I
IPR043611Coronavirus replicase NSP3, C-terminalDomain
A, C, E, G, I
IPR038123Non-structural protein NSP4, C-terminal superfamily, coronavirusHomologous Superfamily
A, C, E, G, I
IPR047566Coronavirus replicase NSP3, Y domainDomain
A, C, E, G, I
IPR043178Papain-like protease, thumb domain superfamily, coronavirusHomologous Superfamily
A, C, E, G, I
IPR043612Non-structural protein NSP4, N-terminal, coronavirusDomain
A, C, E, G, I
IPR044353NSP3, second ubiquitin-like (Ubl) domain, coronavirusDomain
A, C, E, G, I
IPR009003Peptidase S1, PA clanHomologous Superfamily
A, C, E, G, I
IPR013016Peptidase C16, coronavirusDomain
A, C, E, G, I
IPR037204Non-structural protein NSP7 superfamily, coronavirusHomologous Superfamily
A, C, E, G, I
IPR044357NSP3, first ubiquitin-like (Ubl) domain, coronavirusDomain
A, C, E, G, I
IPR046443NSP1, globular domain, alpha/betacoronavirusDomain
A, C, E, G, I
IPR043610Non-structural protein 6, coronavirusDomain
A, C, E, G, I
IPR043477Peptidase C30, domain 3, coronavirusHomologous Superfamily
A, C, E, G, I
IPR011050Pectin lyase fold/virulence factorHomologous Superfamily
A, C, E, G, I
IPR043615Nonstructural protein 2, N-terminal domain, coronavirusDomain
A, C, E, G, I
IPR044369Non-structural protein 6, alphacoronavirusDomain
A, C, E, G, I
IPR014822Non-structural protein NSP9, coronavirusDomain
A, C, E, G, I
IPR037230Non-structural protein NSP8 superfamily, coronavirusHomologous Superfamily
A, C, E, G, I
IPR014828Non-structural protein NSP7, coronavirusDomain
A, C, E, G, I
IPR032505Non-structural protein NSP4, C-terminal, coronavirusDomain
A, C, E, G, I
IPR014829Non-structural protein NSP8, coronavirusDomain
A, C, E, G, I
IPR036499Non-structural protein NSP9 superfamily, coronavirusHomologous Superfamily
A, C, E, G, I
IPR002589Macro domainDomain
A, C, E, G, I
IPR008740Peptidase C30, coronavirusDomain
A, C, E, G, I
IPR047573Non-structural protein 2, middle domain, coronavirusDomain
A, C, E, G, I
IPR049894Coronavirus NSP3, 3Ecto domainDomain
A, C, E, G, I
IPR044309Non-structural protein 5, alphacoronavirusDomain
A, C, E, G, I
IPR043472Macro domain-likeHomologous Superfamily
A, C, E, G, I
IPR044371Non-structural protein 3, X-domain-likeDomain
A, C, E, G, I
IPR043613Non-structural protein 2, C-terminal domain, coronavirusDomain
A, C, E, G, I
IPR044385Nonstructural protein 2, HCoV-229E-likeDomain
A, C, E, G, I
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation