7N1I

CryoEM structure of Venezuelan equine encephalitis virus VLP

Present annotations:

Domain Annotation: ECOD Classification
Gene Product Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth D]	Alpha_E1_glycop_2nd	e7n1iD2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Alpha_E1_glycop_2nd	ECOD (1.6)
A [auth D]	Alpha_E1_glycop_1st	e7n1iD1	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: Alpha_E1_glycop_1st	ECOD (1.6)
A [auth D]	Alpha_E1_glycop_like	e7n1iD3	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: Alpha_E1_glycop_like	ECOD (1.6)
D [auth C]	Alpha_E1_glycop_2nd	e7n1iC2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Alpha_E1_glycop_2nd	ECOD (1.6)
D [auth C]	Alpha_E1_glycop_1st	e7n1iC1	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: Alpha_E1_glycop_1st	ECOD (1.6)
D [auth C]	Alpha_E1_glycop_like	e7n1iC3	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: Alpha_E1_glycop_like	ECOD (1.6)
G [auth B]	Alpha_E1_glycop_2nd	e7n1iB2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Alpha_E1_glycop_2nd	ECOD (1.6)
G [auth B]	Alpha_E1_glycop_1st	e7n1iB1	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: Alpha_E1_glycop_1st	ECOD (1.6)
G [auth B]	Alpha_E1_glycop_like	e7n1iB3	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: Alpha_E1_glycop_like	ECOD (1.6)
J [auth A]	Alpha_E1_glycop_2nd	e7n1iA2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Alpha_E1_glycop_2nd	ECOD (1.6)
J [auth A]	Alpha_E1_glycop_1st	e7n1iA1	A: beta complex topology	X: Viral glycoprotein, central and dimerisation domains-like	H: Viral glycoprotein, central and dimerisation domains (From Topology)	T: Viral glycoprotein, central and dimerisation domains	F: Alpha_E1_glycop_1st	ECOD (1.6)
J [auth A]	Alpha_E1_glycop_like	e7n1iA3	A: extended segments	X: Transmembrane helix of E1 envelope glycoprotein (From Topology)	H: Transmembrane helix of E1 envelope glycoprotein (From Topology)	T: Transmembrane helix of E1 envelope glycoprotein	F: Alpha_E1_glycop_like	ECOD (1.6)
C [auth L]	Peptidase_S3	e7n1iL1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Peptidase_S3	ECOD (1.6)
F [auth K]	Peptidase_S3	e7n1iK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Peptidase_S3	ECOD (1.6)
I [auth J]	Peptidase_S3	e7n1iJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Peptidase_S3	ECOD (1.6)
L [auth I]	Peptidase_S3	e7n1iI1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Peptidase_S3	ECOD (1.6)

Gene Product Annotation Gene Product Annotation

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth D], D [auth C], G [auth B], J [auth A]	E1 envelope glycoprotein	catalytic activity endopeptidase activity serine-type endopeptidase activity peptidase activity serine-type peptidase activity hydrolase activity serine hydrolase activity catalytic activity, acting on a protein structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell viral life cycle movement in host biological process involved in symbiotic interaction entry into host biological process involved in interspecies interaction between organisms viral entry into host cell biological process involved in interaction with host virion attachment to host cell adhesion of symbiont to host adhesion of symbiont to host cell	intracellular anatomical structure cytoplasm cellular anatomical entity host cellular component host cell cytoplasm host cell part host intracellular part host intracellular region host cell host cell plasma membrane host cell membrane plasma membrane membrane cell periphery viral capsid icosahedral viral capsid T=4 icosahedral viral capsid virion component virion membrane
B [auth H], E [auth G], H [auth F], K [auth E]	E2 envelope glycoprotein	catalytic activity endopeptidase activity serine-type endopeptidase activity peptidase activity serine-type peptidase activity hydrolase activity serine hydrolase activity catalytic activity, acting on a protein structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell viral life cycle movement in host biological process involved in symbiotic interaction entry into host biological process involved in interspecies interaction between organisms viral entry into host cell biological process involved in interaction with host virion attachment to host cell adhesion of symbiont to host adhesion of symbiont to host cell	intracellular anatomical structure cytoplasm cellular anatomical entity host cellular component host cell cytoplasm host cell part host intracellular part host intracellular region host cell host cell plasma membrane host cell membrane plasma membrane membrane cell periphery viral capsid icosahedral viral capsid T=4 icosahedral viral capsid virion component virion membrane
C [auth L], F [auth K], I [auth J], L [auth I]	Capsid	catalytic activity endopeptidase activity serine-type endopeptidase activity peptidase activity serine-type peptidase activity hydrolase activity serine hydrolase activity catalytic activity, acting on a protein structural molecule activity	viral process fusion of virus membrane with host endosome membrane membrane fusion involved in viral entry into host cell viral life cycle movement in host biological process involved in symbiotic interaction entry into host biological process involved in interspecies interaction between organisms viral entry into host cell biological process involved in interaction with host virion attachment to host cell adhesion of symbiont to host adhesion of symbiont to host cell	intracellular anatomical structure cytoplasm cellular anatomical entity host cellular component host cell cytoplasm host cell part host intracellular part host intracellular region host cell host cell plasma membrane host cell membrane plasma membrane membrane cell periphery viral capsid icosahedral viral capsid T=4 icosahedral viral capsid virion component virion membrane

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.