7N1I

CryoEM structure of Venezuelan equine encephalitis virus VLP


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth D]Alpha_E1_glycop_2nde7n1iD2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E1_glycop_2ndECOD (1.6)
A [auth D]Alpha_E1_glycop_1ste7n1iD1 A: beta complex topologyX: Viral glycoprotein, central and dimerisation domains-likeH: Viral glycoprotein, central and dimerisation domains (From Topology)T: Viral glycoprotein, central and dimerisation domainsF: Alpha_E1_glycop_1stECOD (1.6)
A [auth D]Alpha_E1_glycop_likee7n1iD3 A: extended segmentsX: Transmembrane helix of E1 envelope glycoprotein (From Topology)H: Transmembrane helix of E1 envelope glycoprotein (From Topology)T: Transmembrane helix of E1 envelope glycoproteinF: Alpha_E1_glycop_likeECOD (1.6)
D [auth C]Alpha_E1_glycop_2nde7n1iC2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E1_glycop_2ndECOD (1.6)
D [auth C]Alpha_E1_glycop_1ste7n1iC1 A: beta complex topologyX: Viral glycoprotein, central and dimerisation domains-likeH: Viral glycoprotein, central and dimerisation domains (From Topology)T: Viral glycoprotein, central and dimerisation domainsF: Alpha_E1_glycop_1stECOD (1.6)
D [auth C]Alpha_E1_glycop_likee7n1iC3 A: extended segmentsX: Transmembrane helix of E1 envelope glycoprotein (From Topology)H: Transmembrane helix of E1 envelope glycoprotein (From Topology)T: Transmembrane helix of E1 envelope glycoproteinF: Alpha_E1_glycop_likeECOD (1.6)
G [auth B]Alpha_E1_glycop_2nde7n1iB2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E1_glycop_2ndECOD (1.6)
G [auth B]Alpha_E1_glycop_1ste7n1iB1 A: beta complex topologyX: Viral glycoprotein, central and dimerisation domains-likeH: Viral glycoprotein, central and dimerisation domains (From Topology)T: Viral glycoprotein, central and dimerisation domainsF: Alpha_E1_glycop_1stECOD (1.6)
G [auth B]Alpha_E1_glycop_likee7n1iB3 A: extended segmentsX: Transmembrane helix of E1 envelope glycoprotein (From Topology)H: Transmembrane helix of E1 envelope glycoprotein (From Topology)T: Transmembrane helix of E1 envelope glycoproteinF: Alpha_E1_glycop_likeECOD (1.6)
J [auth A]Alpha_E1_glycop_2nde7n1iA2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Alpha_E1_glycop_2ndECOD (1.6)
J [auth A]Alpha_E1_glycop_1ste7n1iA1 A: beta complex topologyX: Viral glycoprotein, central and dimerisation domains-likeH: Viral glycoprotein, central and dimerisation domains (From Topology)T: Viral glycoprotein, central and dimerisation domainsF: Alpha_E1_glycop_1stECOD (1.6)
J [auth A]Alpha_E1_glycop_likee7n1iA3 A: extended segmentsX: Transmembrane helix of E1 envelope glycoprotein (From Topology)H: Transmembrane helix of E1 envelope glycoprotein (From Topology)T: Transmembrane helix of E1 envelope glycoproteinF: Alpha_E1_glycop_likeECOD (1.6)
C [auth L]Peptidase_S3e7n1iL1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Peptidase_S3ECOD (1.6)
L [auth I]Peptidase_S3e7n1iI1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Peptidase_S3ECOD (1.6)
F [auth K]Peptidase_S3e7n1iK1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Peptidase_S3ECOD (1.6)
I [auth J]Peptidase_S3e7n1iJ1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: Peptidase_S3ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth D],
D [auth C],
G [auth B],
J [auth A]
PF01589Alphavirus E1 glycoprotein (Alpha_E1_glycop)Alphavirus E1 glycoprotein- Family
B [auth H],
E [auth G],
H [auth F],
K [auth E]
PF00943Alphavirus E2 glycoprotein (Alpha_E2_glycop)Alphavirus E2 glycoprotein- Family
B [auth H],
E [auth G],
H [auth F],
K [auth E]
PF01589Alphavirus E1 glycoprotein (Alpha_E1_glycop)Alphavirus E1 glycoprotein- Family
C [auth L],
F [auth K],
I [auth J],
L [auth I]
PF00944Alphavirus core protein (Peptidase_S3)Alphavirus core proteinAlso known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth D],
D [auth C],
G [auth B],
J [auth A]
E1 envelope glycoprotein
B [auth H],
E [auth G],
H [auth F],
K [auth E]
E2 envelope glycoprotein
C [auth L],
F [auth K],
I [auth J],
L [auth I]
Capsid

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth D],
D [auth C],
G [auth B],
J [auth A]
IPR002533Alphavirus E3 spike glycoproteinDomain
A [auth D],
D [auth C],
G [auth B],
J [auth A]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
A [auth D],
D [auth C],
G [auth B],
J [auth A]
IPR014756Immunoglobulin E-setHomologous Superfamily
A [auth D],
D [auth C],
G [auth B],
J [auth A]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
A [auth D],
D [auth C],
G [auth B],
J [auth A]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
A [auth D],
D [auth C],
G [auth B],
J [auth A]
IPR009003Peptidase S1, PA clanHomologous Superfamily
A [auth D],
D [auth C],
G [auth B],
J [auth A]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
A [auth D],
D [auth C],
G [auth B],
J [auth A]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
A [auth D],
D [auth C],
G [auth B],
J [auth A]
IPR000936Alphavirus E2 glycoproteinFamily
A [auth D],
D [auth C],
G [auth B],
J [auth A]
IPR000930Peptidase S3, togavirinDomain
A [auth D],
D [auth C],
G [auth B],
J [auth A]
IPR002548Alphavirus E1 glycoproteinDomain
A [auth D],
D [auth C],
G [auth B],
J [auth A]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
A [auth D],
D [auth C],
G [auth B],
J [auth A]
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
B [auth H],
E [auth G],
H [auth F],
K [auth E]
IPR002533Alphavirus E3 spike glycoproteinDomain
B [auth H],
E [auth G],
H [auth F],
K [auth E]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
B [auth H],
E [auth G],
H [auth F],
K [auth E]
IPR014756Immunoglobulin E-setHomologous Superfamily
B [auth H],
E [auth G],
H [auth F],
K [auth E]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
B [auth H],
E [auth G],
H [auth F],
K [auth E]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
B [auth H],
E [auth G],
H [auth F],
K [auth E]
IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth H],
E [auth G],
H [auth F],
K [auth E]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
B [auth H],
E [auth G],
H [auth F],
K [auth E]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
B [auth H],
E [auth G],
H [auth F],
K [auth E]
IPR000936Alphavirus E2 glycoproteinFamily
B [auth H],
E [auth G],
H [auth F],
K [auth E]
IPR000930Peptidase S3, togavirinDomain
B [auth H],
E [auth G],
H [auth F],
K [auth E]
IPR002548Alphavirus E1 glycoproteinDomain
B [auth H],
E [auth G],
H [auth F],
K [auth E]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
B [auth H],
E [auth G],
H [auth F],
K [auth E]
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
C [auth L],
F [auth K],
I [auth J],
L [auth I]
IPR002533Alphavirus E3 spike glycoproteinDomain
C [auth L],
F [auth K],
I [auth J],
L [auth I]
IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
C [auth L],
F [auth K],
I [auth J],
L [auth I]
IPR014756Immunoglobulin E-setHomologous Superfamily
C [auth L],
F [auth K],
I [auth J],
L [auth I]
IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
C [auth L],
F [auth K],
I [auth J],
L [auth I]
IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
C [auth L],
F [auth K],
I [auth J],
L [auth I]
IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth L],
F [auth K],
I [auth J],
L [auth I]
IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
C [auth L],
F [auth K],
I [auth J],
L [auth I]
IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
C [auth L],
F [auth K],
I [auth J],
L [auth I]
IPR000936Alphavirus E2 glycoproteinFamily
C [auth L],
F [auth K],
I [auth J],
L [auth I]
IPR000930Peptidase S3, togavirinDomain
C [auth L],
F [auth K],
I [auth J],
L [auth I]
IPR002548Alphavirus E1 glycoproteinDomain
C [auth L],
F [auth K],
I [auth J],
L [auth I]
IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
C [auth L],
F [auth K],
I [auth J],
L [auth I]
IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily