7ODE | pdb_00007ode

E. coli 50S ribosome LiCl core particle


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth Z]SCOP2B Superfamilyl21p-like 8096354 3002005 SCOP2B (2022-06-29)
K [auth a]SCOP2B SuperfamilyRibosomal protein L22 8096336 3001078 SCOP2B (2022-06-29)
L [auth b]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8035415 3000210 SCOP2B (2022-06-29)
M [auth c]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096358 3000334 SCOP2B (2022-06-29)
N [auth g]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
O [auth i]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096380 3001320 SCOP2B (2022-06-29)
B [auth K]SCOP2B SuperfamilyNucleic acid-binding proteins 8035394 3000135 SCOP2B (2022-06-29)
C [auth L]SCOP2B SuperfamilyTranslational proteins 8032955 3000811 SCOP2B (2022-06-29)
D [auth M]SCOP2B SuperfamilyRibosomal protein L4 8096356 3001146 SCOP2B (2022-06-29)
E [auth R]SCOP2B SuperfamilyRibosomal protein L13 8096350 3001134 SCOP2B (2022-06-29)
F [auth S]SCOP2B Superfamily50S Ribosomal protein L14-like 8103358 3000433 SCOP2B (2022-06-29)
G [auth V]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8035409 3000995 SCOP2B (2022-06-29)
H [auth X]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096364 3000334 SCOP2B (2022-06-29)
I [auth Y]SCOP2B SuperfamilyRibosomal protein L20 8096382 3000563 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth Z]Ribosomal_L21pe7odeZ1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
K [auth a]Ribosomal_L22e7odea1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
L [auth b]Ribosomal_L23_2e7odeb1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
M [auth c]ribosomal_L24_1e7odec1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
N [auth g]Ribosomal_L29e7odeg1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
O [auth i]Ribosomal_L32pe7odei1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
P [auth k]Ribosomal_L34e7odek1 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
B [auth K]Ribosomal_L2_1e7odeK2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
B [auth K]Ribosomal_L2_C_2e7odeK1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_C_2ECOD (1.6)
C [auth L]Ribosomal_L3e7odeL1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
D [auth M]Ribosomal_L4e7odeM1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
E [auth R]Ribosomal_L13e7odeR1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
F [auth S]Ribosomal_L14e7odeS1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
G [auth V]Ribosomal_L17_1e7odeV1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
H [auth X]Ribosomal_L19e7odeX1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
I [auth Y]Ribosomal_L20e7odeY1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
K [auth a]3.90.470.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22 Chain ACATH (utative)

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth I]23S rRNA---
J [auth Z]50S ribosomal protein L21
K [auth a]50S ribosomal protein L22
L [auth b]50S ribosomal protein L23
M [auth c]50S ribosomal protein L24
N [auth g]50S ribosomal protein L29
O [auth i]50S ribosomal protein L32
P [auth k]50S ribosomal protein L34
B [auth K]50S ribosomal protein L2
C [auth L]50S ribosomal protein L3
D [auth M]50S ribosomal protein L4
E [auth R]50S ribosomal protein L13
F [auth S]50S ribosomal protein L14
G [auth V]50S ribosomal protein L17
H [auth X]50S ribosomal protein L19
I [auth Y]50S ribosomal protein L20

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth Z]IPR028909Large ribosomal subunit protein bL21-likeFamily
J [auth Z]IPR001787Large ribosomal subunit protein bL21Family
J [auth Z]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
J [auth Z]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
K [auth a]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
K [auth a]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
K [auth a]IPR001063Large ribosomal subunit protein uL22Family
K [auth a]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
K [auth a]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
L [auth b]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
L [auth b]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
L [auth b]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
L [auth b]IPR013025Large ribosomal subunit protein uL23-likeFamily
M [auth c]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
M [auth c]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
M [auth c]IPR003256Large ribosomal subunit protein uL24Family
M [auth c]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
M [auth c]IPR005824KOWDomain
M [auth c]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
N [auth g]IPR050063Universal ribosomal protein uL29Family
N [auth g]IPR001854Large ribosomal subunit protein uL29Family
N [auth g]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
N [auth g]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
O [auth i]IPR002677Large ribosomal subunit protein bL32Family
O [auth i]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
O [auth i]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
P [auth k]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
P [auth k]IPR000271Large ribosomal subunit protein bL34Family
B [auth K]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
B [auth K]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
B [auth K]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
B [auth K]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
B [auth K]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
B [auth K]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
B [auth K]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
B [auth K]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
B [auth K]IPR002171Large ribosomal subunit protein uL2Family
C [auth L]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
C [auth L]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
C [auth L]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
C [auth L]IPR000597Large ribosomal subunit protein uL3Family
D [auth M]IPR013005Large ribosomal subunit protein uL4-likeFamily
D [auth M]IPR002136Large ribosomal subunit protein uL4Family
D [auth M]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
E [auth R]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
E [auth R]IPR005822Large ribosomal subunit protein uL13Family
E [auth R]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
E [auth R]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
F [auth S]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
F [auth S]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
F [auth S]IPR000218Large ribosomal subunit protein uL14Family
F [auth S]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
G [auth V]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
G [auth V]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
G [auth V]IPR000456Large ribosomal subunit protein bL17Family
H [auth X]IPR001857Large ribosomal subunit protein bL19Family
H [auth X]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
H [auth X]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
H [auth X]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
I [auth Y]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
I [auth Y]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
I [auth Y]IPR005813Large ribosomal subunit protein bL20Family

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A [auth I]1MG Parent Component: G

A [auth I]2MA Parent Component: A

A [auth I]2MG Parent Component: G

A [auth I]3TD Parent Component: U

A [auth I]5MC Parent Component: C

A [auth I]5MU Parent Component: U

A [auth I]6MZ Parent Component: A

A [auth I]G7M Parent Component: G

A [auth I]H2U Parent Component: U

A [auth I]OMC Parent Component: C

A [auth I]OMG Parent Component: G

A [auth I]OMU Parent Component: U

A [auth I]PSU Parent Component: U

C [auth L]MEQ Parent Component: GLN

RESIDAA0071

PSI-MOD :  N5-methyl-L-glutamine MOD:00080