7TUT | pdb_00007tut

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B [auth C]	SCOP2B Superfamily	Ribosomal protein L4	8052829	3001146	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	60S ribosomal protein L4 C-terminal domain-like	8052828	3002143	SCOP2B (2022-06-29)
H [auth I]	SCOP2B Superfamily	Ribosomal protein L16p/L10e	8097320	3000884	SCOP2B (2022-06-29)
I [auth J]	SCOP2B Superfamily	RL5-like	8073894	3001709	SCOP2B (2022-06-29)
L [auth N]	SCOP2B Superfamily	Ribosomal proteins S24e, L23 and L15e	8082477	3000210	SCOP2B (2022-06-29)
P [auth R]	SCOP2B Superfamily	Ribosomal protein L19 (L19e)	8107568	3000890	SCOP2B (2022-06-29)
S [auth U]	SCOP2B Superfamily	60S Ribosomal protein L22e	8061156	3002158	SCOP2B (2022-06-29)
T [auth V]	SCOP2B Superfamily	50S Ribosomal protein L14-like	8072048	3000433	SCOP2B (2022-06-29)
V [auth X]	SCOP2B Superfamily	Ribosomal proteins S24e, L23 and L15e	8095966	3000210	SCOP2B (2022-06-29)
W [auth Y]	SCOP2B Superfamily	Translation proteins SH3-like KOW motif containing domain	8076754	3000334	SCOP2B (2022-06-29)
X [auth Z]	SCOP2B Superfamily	Translation proteins SH3-like KOW motif containing domain	8053047	3000334	SCOP2B (2022-06-29)
Y [auth a]	SCOP2B Superfamily	Ribosomal proteins L15p and L18e	8097818	3001045	SCOP2B (2022-06-29)
AA [auth c]	SCOP2B Superfamily	L30e-like	8094953	3001739	SCOP2B (2022-06-29)
CA [auth e]	SCOP2B Superfamily	Ribosomal protein L32e	8102088	3000982	SCOP2B (2022-06-29)
DA [auth f]	SCOP2B Superfamily	Translational proteins	8093714	3000811	SCOP2B (2022-06-29)
EA [auth g]	SCOP2B Superfamily	Ribosomal protein L34e-like	8103328	3002203	SCOP2B (2022-06-29)
GA [auth i]	SCOP2B Superfamily	Ribosomal protein L36e	8053119	3002161	SCOP2B (2022-06-29)
IA [auth k]	SCOP2B Superfamily	Ribosomal L38e protein-like	8093716	3002206	SCOP2B (2022-06-29)
JA [auth l]	SCOP2B Superfamily	Ribosomal protein L39e	8095595	3001756	SCOP2B (2022-06-29)
NA [auth p]	SCOP2B Superfamily	Zn-binding ribosomal proteins	8101435	3001320	SCOP2B (2022-06-29)
SA [auth w]	SCOP2B Superfamily	Translational proteins	8078357	3000811	SCOP2B (2022-06-29)
UA [auth 1]	SCOP2B Superfamily	SecY-like	8056967	3000333	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Ribosomal_L2_1	e7tutA2	A: beta barrels	X: OB-fold	H: Nucleic acid-binding proteins (From Topology)	T: Nucleic acid-binding proteins	F: Ribosomal_L2_1	ECOD (1.6)
A	Ribosomal_L2_C_2	e7tutA1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Ribosomal_L2_C_2	ECOD (1.6)
B [auth C]	Ribosomal_L4	e7tutC2	A: a/b three-layered sandwiches	X: Ribosomal protein L4 (From Topology)	H: Ribosomal protein L4 (From Topology)	T: Ribosomal protein L4	F: Ribosomal_L4	ECOD (1.6)
B [auth C]	Ribos_L4_asso_C	e7tutC1	A: extended segments	X: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)	H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)	T: C-terminal helical region in 60S ribosomal protein L4 (L4p)	F: Ribos_L4_asso_C	ECOD (1.6)
C [auth D]	Ribosomal_L5e	e7tutD1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Ribonuclease H-like (From Topology)	T: Ribonuclease H-like	F: Ribosomal_L5e	ECOD (1.6)
D [auth E]	Ribosomal_L6e	e7tutE1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Ribosomal_L6e	ECOD (1.6)
E [auth F]	Ribosomal_L30_1	e7tutF1	A: a+b two layers	X: Ribosomal protein L30p/L7e (From Topology)	H: Ribosomal protein L30p/L7e (From Topology)	T: Ribosomal protein L30p/L7e	F: Ribosomal_L30_1	ECOD (1.6)
F [auth G]	Ribosomal_L7Ae_1	e7tutG1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: L30e-like (From Topology)	T: L30e-like	F: Ribosomal_L7Ae_1	ECOD (1.6)
G [auth H]	Ribosomal_L6_2	e7tutH1	A: a+b two layers	X: Ribosomal protein L6 (From Topology)	H: Ribosomal protein L6 (From Topology)	T: Ribosomal protein L6	F: Ribosomal_L6_2	ECOD (1.6)
G [auth H]	Ribosomal_L6	e7tutH2	A: a+b two layers	X: Ribosomal protein L6 (From Topology)	H: Ribosomal protein L6 (From Topology)	T: Ribosomal protein L6	F: Ribosomal_L6	ECOD (1.6)
H [auth I]	Ribosomal_L16	e7tutI1	A: a+b complex topology	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: Ribosomal protein L10e	F: Ribosomal_L16	ECOD (1.6)
I [auth J]	Ribosomal_L5_C	e7tutJ1	A: a+b two layers	X: Ribosomal protein L5 (From Topology)	H: Ribosomal protein L5 (From Topology)	T: Ribosomal protein L5	F: Ribosomal_L5_C	ECOD (1.6)
J [auth L]	Ribosomal_L13e	e7tutL1	A: extended segments	X: RPL13 (From Topology)	H: RPL13 (From Topology)	T: RPL13	F: Ribosomal_L13e	ECOD (1.6)
K [auth M]	Ribosomal_L14e	e7tutM1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Ribosomal_L14e	ECOD (1.6)
L [auth N]	Ribosomal_L15e	e7tutN1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal proteins S24e, L23 and L15e (From Topology)	T: Ribosomal proteins S24e, L23 and L15e	F: Ribosomal_L15e	ECOD (1.6)
M [auth O]	Ribosomal_L13	e7tutO1	A: a/b three-layered sandwiches	X: Ribosomal protein L13/L15p/L18e/L32e	H: Ribosomal protein L13 and L16-A (From Topology)	T: Ribosomal protein L13 and L16-A	F: Ribosomal_L13	ECOD (1.6)
N [auth P]	Ribosomal_L22	e7tutP1	A: a+b two layers	X: Enolase-N/ribosomal protein	H: Ribosomal protein L22 (From Topology)	T: Ribosomal protein L22	F: Ribosomal_L22	ECOD (1.6)
O [auth Q]	Ribosomal_L18	e7tutQ1	A: a/b three-layered sandwiches	X: Ribosomal protein L13/L15p/L18e/L32e	H: Ribosomal proteins L15p and L18e (From Topology)	T: Ribosomal proteins L15p and L18e	F: Ribosomal_L18	ECOD (1.6)
P [auth R]	Ribosomal_L19e_N	e7tutR2	A: alpha arrays	X: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)	H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)	T: Ribosomal protein L19 (L19e) N-terminal domain	F: Ribosomal_L19e_N	ECOD (1.6)
P [auth R]	Ribosomal_L19e_C	e7tutR1	A: alpha bundles	X: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)	H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)	T: Ribosomal protein L19 (L19e) C-terminal domain	F: Ribosomal_L19e_C	ECOD (1.6)
Q [auth S]	Ribosomal_L18A	e7tutS1	A: a+b two layers	X: GP2-like	H: RplX-like (From Topology)	T: RplX-like	F: Ribosomal_L18A	ECOD (1.6)
R [auth T]	Ribosomal_L21e	e7tutT1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Ribosomal_L21e	ECOD (1.6)
S [auth U]	Ribosomal_L22e	e7tutU1	A: a+b two layers	X: Ribosomal protein L22e (From Topology)	H: Ribosomal protein L22e (From Topology)	T: Ribosomal protein L22e	F: Ribosomal_L22e	ECOD (1.6)
T [auth V]	Ribosomal_L14	e7tutV1	A: beta barrels	X: Ribosomal protein L14-like	H: Ribosomal protein L14-related (From Topology)	T: Ribosomal protein L14-related	F: Ribosomal_L14	ECOD (1.6)
U [auth W]	Ribosomal_L24e	e7tutW1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: LIM domain-like	T: LIM domain-like	F: Ribosomal_L24e	ECOD (1.6)
V [auth X]	Ribosomal_L23_3	e7tutX1	A: a+b two layers	X: Alpha-beta plaits	H: Ribosomal proteins S24e, L23 and L15e (From Topology)	T: Ribosomal proteins S24e, L23 and L15e	F: Ribosomal_L23_3	ECOD (1.6)
W [auth Y]	Ribosomal_L26	e7tutY1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Ribosomal_L26	ECOD (1.6)
X [auth Z]	Ribosomal_L27e	e7tutZ1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: Ribosomal_L27e	ECOD (1.6)
Y [auth a]	Ribosomal_L18	e7tuta1	A: a/b three-layered sandwiches	X: Ribosomal protein L13/L15p/L18e/L32e	H: Ribosomal proteins L15p and L18e (From Topology)	T: Ribosomal proteins L15p and L18e	F: Ribosomal_L18	ECOD (1.6)
Z [auth b]	Ribosomal_L29e	e7tutb1	A: extended segments	X: RPL29 (From Topology)	H: RPL29 (From Topology)	T: RPL29	F: Ribosomal_L29e	ECOD (1.6)
AA [auth c]	Ribosomal_L7Ae	e7tutc1	A: a+b three layers	X: Bacillus chorismate mutase-like	H: L30e-like (From Topology)	T: L30e-like	F: Ribosomal_L7Ae	ECOD (1.6)
BA [auth d]	Ribosomal_L31e	e7tutd1	A: a+b two layers	X: Ribosomal protein L31e-like	H: Ribosomal protein L31e/gp120 outer domain (From Topology)	T: Ribosomal protein L31e/gp120 outer domain	F: Ribosomal_L31e	ECOD (1.6)
CA [auth e]	Ribosomal_L32e	e7tute1	A: a/b three-layered sandwiches	X: Ribosomal protein L13/L15p/L18e/L32e	H: Ribosomal protein L32e (From Topology)	T: Ribosomal protein L32e	F: Ribosomal_L32e	ECOD (1.6)
DA [auth f]	Ribosomal_L35Ae	e7tutf1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Ribosomal_L35Ae	ECOD (1.6)
EA [auth g]	Ribosomal_L34e	e7tutg1	A: few secondary structure elements	X: Glucocorticoid receptor-like	H: RPL34 (From Topology)	T: RPL34	F: Ribosomal_L34e	ECOD (1.6)
FA [auth h]	Ribosomal_L29_2	e7tuth1	A: alpha bundles	X: Long alpha-hairpin	H: Ribosomal protein L29 (L29p) (From Topology)	T: Ribosomal protein L29 (L29p)	F: Ribosomal_L29_2	ECOD (1.6)
GA [auth i]	Ribosomal_L36e	e7tuti1	A: alpha arrays	X: 60S ribosomal protein rpL36 (L36e) (From Topology)	H: 60S ribosomal protein rpL36 (L36e) (From Topology)	T: 60S ribosomal protein rpL36 (L36e)	F: Ribosomal_L36e	ECOD (1.6)
HA [auth j]	Ribosomal_L37e	e7tutj1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Ribosomal_L37e	ECOD (1.6)
IA [auth k]	Ribosomal_L38e	e7tutk1	A: a+b two layers	X: SRP9/14-like	H: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)	T: Signal recognition particle alu RNA binding heterodimer SRP9/14-related	F: Ribosomal_L38e	ECOD (1.6)
JA [auth l]	Ribosomal_L39	e7tutl1	A: extended segments	X: Ribosomal protein L39e (From Topology)	H: Ribosomal protein L39e (From Topology)	T: Ribosomal protein L39e	F: Ribosomal_L39	ECOD (1.6)
KA [auth m]	Ribosomal_L40e	e7tutm1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Ribosomal_L40e	ECOD (1.6)
LA [auth n]	Ribosomal_L41	e7tutn1	A: extended segments	X: Ribosomal protein L41-A (From Topology)	H: Ribosomal protein L41-A (From Topology)	T: Ribosomal protein L41-A	F: Ribosomal_L41	ECOD (1.6)
MA [auth o]	Ribosomal_L44	e7tuto1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Ribosomal_L44	ECOD (1.6)
NA [auth p]	Ribosomal_L37ae	e7tutp1	A: few secondary structure elements	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Ribosomal_L37ae	ECOD (1.6)
PA [auth r]	Ribosomal_L28e	e7tutr1	A: a+b two layers	X: RPL28 (From Topology)	H: RPL28 (From Topology)	T: RPL28	F: Ribosomal_L28e	ECOD (1.6)
SA [auth w]	Ribosomal_L3	e7tutw1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Ribosomal_L3	ECOD (1.6)
UA [auth 1]	SecY	e7tut11	A: alpha complex topology	X: Preprotein translocase SecY subunit (From Topology)	H: Preprotein translocase SecY subunit (From Topology)	T: Preprotein translocase SecY subunit	F: SecY	ECOD (1.6)
VA [auth 2]	Sec61_beta	e7tut21	A: extended segments	X: Sec-beta subunit (From Topology)	H: Sec-beta subunit (From Topology)	T: Sec-beta subunit	F: Sec61_beta	ECOD (1.6)
WA [auth 3]	SecE_1	e7tut31	A: extended segments	X: Preprotein translocase SecE subunit (From Topology)	H: Preprotein translocase SecE subunit (From Topology)	T: Preprotein translocase SecE subunit	F: SecE_1	ECOD (1.6)
BB [auth 8]	F_UNCLASSIFIED	e7tut82	A: alpha bundles	X: Golgi to ER traffic protein 1 cytosolic domain (From Topology)	H: Golgi to ER traffic protein 1 cytosolic domain (From Topology)	T: Golgi to ER traffic protein 1 cytosolic domain	F: F_UNCLASSIFIED	ECOD (1.6)
BB [auth 8]	F_UNCLASSIFIED	e7tut81	A: alpha bundles	X: Membrane protein insertase YidC-related (From Homology)	H: Membrane protein insertase YidC-related	T: DUF106	F: F_UNCLASSIFIED	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF03947	Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)	Ribosomal Proteins L2, C-terminal domain		Domain
A	PF00181	Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)	Ribosomal Proteins L2, RNA binding N-terminal domain		Domain
A	PF00828	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)	Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A	This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins.	Domain
B [auth C]	PF14374	60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)	60S ribosomal protein L4 C-terminal domain	This family is found at the very C-terminal of 60 ribosomal L4 proteins.	Domain
B [auth C]	PF00573	Ribosomal protein L4/L1 family (Ribosomal_L4)	Ribosomal protein L4/L1 family	-	Family
B [auth C]	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...	This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].	Domain
C [auth D]	PF01198	Ribosomal protein L31e (Ribosomal_L31e)	Ribosomal protein L31e	-	Family
D [auth E]	PF01655	Ribosomal protein L32 (Ribosomal_L32e)	Ribosomal protein L32	-	Family
D [auth E]	PF01159	Ribosomal protein L6e (Ribosomal_L6e)	Ribosomal protein L6e	-	Family
E [auth F]	PF08079	Ribosomal L30 N-terminal domain (Ribosomal_L30_N)	Ribosomal L30 N-terminal domain	This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].	Domain
E [auth F]	PF00327	Ribosomal protein L30p/L7e (Ribosomal_L30)	Ribosomal protein L30p/L7e	This family includes prokaryotic L30 and eukaryotic L7.	Domain
E [auth F]	PF01247	Ribosomal protein L35Ae (Ribosomal_L35Ae)	Ribosomal protein L35Ae		Domain
F [auth G]	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...	This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].	Domain
G [auth H]	PF00347	Ribosomal protein L6 (Ribosomal_L6)	Ribosomal protein L6		Domain
G [auth H]	PF00831	Ribosomal L29 protein (Ribosomal_L29)	Ribosomal L29 protein	-	Family
H [auth I]	PF00252	Ribosomal protein L16p/L10e (Ribosomal_L16)	Ribosomal protein L16p/L10e		Domain
H [auth I]	PF01158	Ribosomal protein L36e (Ribosomal_L36e)	Ribosomal protein L36e	-	Family
I [auth J]	PF00281	Ribosomal protein L5 (Ribosomal_L5)	Ribosomal protein L5		Domain
I [auth J]	PF01907	Ribosomal protein L37e (Ribosomal_L37e)	Ribosomal protein L37e	-	Family
I [auth J]	PF00673	ribosomal L5P family C-terminus (Ribosomal_L5_C)	ribosomal L5P family C-terminus	This region is found associated with Pfam:PF00281.	Domain
J [auth L]	PF00832	Ribosomal L39 protein (Ribosomal_L39)	Ribosomal L39 protein	-	Family
K [auth M]	PF01020	Ribosomal L40e family (Ribosomal_L40e)	Ribosomal L40e family	Bovine L40 has been identified as a secondary RNA binding protein [1]. L40 is fused to a ubiquitin protein [2].	Domain
K [auth M]	PF01929	Ribosomal protein L14 (Ribosomal_L14e)	Ribosomal protein L14	-	Family
L [auth N]	PF05162	Ribosomal protein L41 (Ribosomal_L41)	Ribosomal protein L41	-	Family
M [auth O]	PF00935	Ribosomal protein L44 (Ribosomal_L44)	Ribosomal protein L44	-	Family
N [auth P]	PF00237	Ribosomal protein L22p/L17e (Ribosomal_L22)	Ribosomal protein L22p/L17e	This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.	Domain
N [auth P]	PF01780	Ribosomal L37ae protein family (Ribosomal_L37ae)	Ribosomal L37ae protein family	-	Family
P [auth R]	PF01778	Ribosomal L28e protein family (Ribosomal_L28e)	Ribosomal L28e protein family	-	Family
P [auth R]	PF01280	Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e)	Ribosomal protein L19e, N-terminal domain	This domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology.	Domain
T [auth V]	PF00238	Ribosomal protein L14p/L23e (Ribosomal_L14)	Ribosomal protein L14p/L23e		Domain
U [auth W]	PF00297	Ribosomal protein L3 (Ribosomal_L3)	Ribosomal protein L3	-	Family
U [auth W]	PF01246	Ribosomal protein L24e (Ribosomal_L24e)	Ribosomal protein L24e		Domain
V [auth X]	PF00276	Ribosomal protein L23 (Ribosomal_L23)	Ribosomal protein L23	-	Family
W [auth Y]	PF16906	Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)	Ribosomal proteins L26 eukaryotic, L24P archaeal	-	Family
W [auth Y]	PF00467	KOW motif (KOW)	KOW motif	-	Family
X [auth Z]	PF01777	Ribosomal L27e protein family (Ribosomal_L27e)	Ribosomal L27e protein family	-	Family
X [auth Z]	PF00467	KOW motif (KOW)	KOW motif	-	Family
TA [auth B]	PF01779	Ribosomal L29e protein family (Ribosomal_L29e)	Ribosomal L29e protein family	-	Family
UA [auth 1]	PF10559	Plug domain of Sec61p (Plug_translocon)	Plug domain of Sec61p	The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side.The plug is unl ...	The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side.The plug is unlikely to be important for sealing the translocation pore in yeast but it plays a role in stabilising Sec61p during translocon formation. The domain runs from residues 52-74 [1].	Domain
UA [auth 1]	PF00344	SecY (SecY)	SecY	-	Family
XA [auth 4]	PF07946	PAT complex subunit CCDC47 (CCDC47)	PAT complex subunit CCDC47	-	Family
ZA [auth 7]	PF04389	Peptidase family M28 (Peptidase_M28)	Peptidase family M28		Domain
AB [auth 6]	PF09767	Predicted membrane protein (DUF2053) (DUF2053)	Predicted membrane protein (DUF2053)	-	Family
CB [auth K]	PF01781	Ribosomal L38e protein family (Ribosomal_L38e)	Ribosomal L38e protein family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	uL2	RNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process cytoplasmic translation metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
B [auth C]	uL4	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
C [auth D]	uL18	RNA binding binding rRNA binding 5S rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly cellular process cellular component organization or biogenesis ribosome assembly biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen protein-containing complex ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome ribonucleoprotein complex ribosome cytoplasm cytosol large ribosomal subunit
D [auth E]	eL6	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process cytoplasmic translation metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly biosynthetic process cytoplasmic translation metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process ribonucleoprotein complex biogenesis organelle assembly protein-containing complex organization membraneless organelle assembly ribosomal large subunit biogenesis protein-RNA complex assembly cellular component biogenesis cellular component organization ribosome biogenesis organelle organization protein-RNA complex organization cellular component assembly ribosomal large subunit assembly protein-containing complex assembly cellular component organization or biogenesis ribosome assembly	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit rough endoplasmic reticulum membrane-bounded organelle endoplasmic reticulum intracellular membrane-bounded organelle endomembrane system
E [auth F]	uL30	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process cellular component organization or biogenesis RNA processing rRNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process cellular component organization or biogenesis RNA processing rRNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process ribosomal large subunit biogenesis macromolecule biosynthetic process nucleic acid metabolic process maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biosynthetic process cellular process metabolic process macromolecule metabolic process maturation of LSU-rRNA	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
F [auth G]	eL8	RNA binding binding nucleic acid binding	-	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
G [auth H]	uL6	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process cytoplasmic translation metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
H [auth I]	uL16	structural molecule activity structural constituent of ribosome	regulation of biosynthetic process regulation of biological process regulation of cellular process regulation of protein metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression regulation of gene expression biosynthetic process regulation of translation regulation of biosynthetic process regulation of biological process regulation of cellular process regulation of protein metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression regulation of gene expression biosynthetic process regulation of translation regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process protein metabolic process regulation of metabolic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
I [auth J]	uL5	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen protein-containing complex ribonucleoprotein complex cytoplasm ribosome
J [auth L]	eL13	-	-	-
K [auth M]	eL14	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal large subunit biogenesis biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
L [auth N]	eL15	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process cytoplasmic translation metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
M [auth O]	uL13	-	-	-
N [auth P]	uL22	structural molecule activity structural constituent of ribosome	biosynthetic process cytoplasmic translation metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
O [auth Q]	eL18	-	-	-
P [auth R]	eL19	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
Q [auth S]	eL20	-	-	-
R [auth T]	eL21	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex ribonucleoprotein complex intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome membrane-bounded organelle endoplasmic reticulum intracellular membrane-bounded organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex ribonucleoprotein complex intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome membrane-bounded organelle endoplasmic reticulum intracellular membrane-bounded organelle endomembrane system
S [auth U]	eL22	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome heparin binding glycosaminoglycan binding carbohydrate derivative binding sulfur compound binding	biosynthetic process cytoplasmic translation metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
T [auth V]	uL14	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
U [auth W]	eL24	RNA binding binding nucleic acid binding mRNA binding structural molecule activity structural constituent of ribosome	biosynthetic process cytoplasmic translation metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
V [auth X]	eL23	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure cytosolic ribosome organelle membraneless organelle intracellular membraneless organelle ribosome cytoplasm cytosol ribosomal subunit protein-containing complex ribonucleoprotein complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytosolic ribosome organelle membraneless organelle intracellular membraneless organelle ribosome cytoplasm cytosol ribosomal subunit protein-containing complex ribonucleoprotein complex membrane-bounded organelle nucleus intracellular membrane-bounded organelle
W [auth Y]	uL24	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm protein-containing complex intracellular membraneless organelle ribosomal subunit intracellular organelle ribonucleoprotein complex organelle membraneless organelle ribosome large ribosomal subunit
X [auth Z]	eL27	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit rough endoplasmic reticulum membrane-bounded organelle endoplasmic reticulum intracellular membrane-bounded organelle endomembrane system synapse cell junction
Y [auth a]	uL15	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
Z [auth b]	eL29	structural molecule activity structural constituent of ribosome	biosynthetic process cytoplasmic translation metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
AA [auth c]	eL30	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process cytoplasmic translation metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process humoral immune response biological process involved in interspecies interaction between organisms response to stimulus response to other organism biosynthetic process cytoplasmic translation metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process humoral immune response biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response immune response defense response to symbiont response to external stimulus antimicrobial humoral response response to biotic stimulus antimicrobial humoral immune response mediated by antimicrobial peptide defense response to other organism response to stress immune system process response to external biotic stimulus disruption of cell in another organism disruption of anatomical structure in another organism killing of cells of another organism cell killing defense response to Gram-negative bacterium defense response to bacterium response to bacterium	postsynaptic density postsynapse cellular anatomical structure neuron to neuron synapse postsynaptic specialization organelle synapse cell junction asymmetric synapse protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit postsynaptic density postsynapse cellular anatomical structure neuron to neuron synapse postsynaptic specialization organelle synapse cell junction asymmetric synapse protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit membrane-bounded organelle nucleus intracellular membrane-bounded organelle
BA [auth d]	eL31	structural molecule activity structural constituent of ribosome	biosynthetic process cytoplasmic translation metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
CA [auth e]	eL32	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
DA [auth f]	eL33	RNA binding binding tRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit synapse cell junction
EA [auth g]	eL34	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex ribonucleoprotein complex intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome membrane-bounded organelle endoplasmic reticulum intracellular membrane-bounded organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex ribonucleoprotein complex intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome membrane-bounded organelle endoplasmic reticulum intracellular membrane-bounded organelle endomembrane system
FA [auth h]	eL35	RNA binding binding nucleic acid binding mRNA binding structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process cellular component organization or biogenesis RNA processing rRNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process cellular component organization or biogenesis RNA processing rRNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process ribosomal large subunit biogenesis macromolecule biosynthetic process nucleic acid metabolic process maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biosynthetic process cellular process metabolic process macromolecule metabolic process maturation of LSU-rRNA protein metabolic process translation	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
GA [auth i]	eL36	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex ribonucleoprotein complex intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
HA [auth j]	eL37	RNA binding binding rRNA binding nucleic acid binding enzyme regulator activity molecular function inhibitor activity ubiquitin-protein transferase regulator activity ubiquitin-protein transferase inhibitor activity ubiquitin ligase inhibitor activity molecular function regulator activity enzyme inhibitor activity protein binding MDM2/MDM4 family protein binding cation binding RNA binding binding rRNA binding nucleic acid binding enzyme regulator activity molecular function inhibitor activity ubiquitin-protein transferase regulator activity ubiquitin-protein transferase inhibitor activity ubiquitin ligase inhibitor activity molecular function regulator activity enzyme inhibitor activity protein binding MDM2/MDM4 family protein binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding structural molecule activity structural constituent of ribosome	cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction regulation of signal transduction by p53 class mediator positive regulation of signal transduction by p53 class mediator cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction regulation of signal transduction by p53 class mediator positive regulation of signal transduction by p53 class mediator signal transduction positive regulation of cellular process regulation of biological process regulation of signaling biological regulation positive regulation of intracellular signal transduction signal transduction by p53 class mediator regulation of response to stimulus regulation of cell communication cellular process positive regulation of signaling biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	cellular anatomical structure synapse cell junction protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cellular anatomical structure synapse cell junction protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
IA [auth k]	eL38	structural molecule activity structural constituent of ribosome	cellular component organization cellular component biogenesis ribonucleoprotein complex biogenesis protein-RNA complex organization cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis protein-RNA complex assembly biosynthetic process metabolic process primary metabolic process protein metabolic process cellular component organization cellular component biogenesis ribonucleoprotein complex biogenesis protein-RNA complex organization cellular component assembly protein-containing complex organization protein-containing complex assembly cellular process cellular component organization or biogenesis protein-RNA complex assembly biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
JA [auth l]	eL39	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
KA [auth m]	eL40	structural molecule activity structural constituent of ribosome	biosynthetic process cytoplasmic translation metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit membrane-bounded organelle nucleus intracellular membrane-bounded organelle
LA [auth n]	eL41	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
MA [auth o]	eL42	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex ribonucleoprotein complex intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
NA [auth p]	eL43	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding structural molecule activity structural constituent of ribosome RNA binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
OA [auth q]	P-site tRNA	-	-	-
PA [auth r]	eL28	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
QA [auth u]	5S ribosomal RNA	-	-	-
RA [auth v]	5.8S ribosomal RNA	-	-	-
SA [auth w]	uL3	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression macromolecule biosynthetic process	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membraneless organelle intracellular membrane-bounded organelle nucleolus intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle membraneless organelle nuclear lumen protein-containing complex ribosomal subunit cytosolic large ribosomal subunit cytosolic ribosome ribonucleoprotein complex ribosome cytoplasm cytosol large ribosomal subunit
TA [auth B]	Nascent chain	-	-	-
UA [auth 1]	Protein transport protein Sec61 subunit alpha isoform 1	macromolecule transmembrane transporter activity protein transporter activity protein transmembrane transporter activity transporter activity transmembrane transporter activity signal sequence binding binding peptide binding ribonucleoprotein complex binding protein-containing complex binding ribosome binding	developmental process multicellular organismal process pronephric nephron development animal organ development renal system development multicellular organism development pronephros development anatomical structure development nephron development kidney development system development membrane organization establishment of protein localization cellular localization developmental process multicellular organismal process pronephric nephron development animal organ development renal system development multicellular organism development pronephros development anatomical structure development nephron development kidney development system development membrane organization establishment of protein localization cellular localization establishment of protein localization to membrane localization within membrane endoplasmic reticulum organization establishment of localization cellular component organization localization organelle organization protein localization to organelle macromolecule localization cellular process intracellular protein localization cellular component organization or biogenesis protein insertion into membrane protein insertion into ER membrane endomembrane system organization protein targeting cotranslational protein targeting to membrane protein targeting to membrane nitrogen compound transport transport protein transmembrane transport establishment of localization in cell post-translational protein targeting to membrane, translocation establishment of protein localization to endoplasmic reticulum intracellular protein transmembrane transport intracellular transport post-translational protein targeting to endoplasmic reticulum membrane transmembrane transport establishment of protein localization to organelle protein transport intracellular protein transport protein targeting to ER SRP-dependent cotranslational protein targeting to membrane SRP-dependent cotranslational protein targeting to membrane, translocation	membrane-bounded organelle protein-containing complex intracellular anatomical structure Sec61 translocon complex membrane protein complex endomembrane system rough endoplasmic reticulum endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure bounding membrane of organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane membrane-bounded organelle protein-containing complex intracellular anatomical structure Sec61 translocon complex membrane protein complex endomembrane system rough endoplasmic reticulum endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure bounding membrane of organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane organelle subcompartment membrane intracellular membrane-bounded organelle translocon complex rough endoplasmic reticulum membrane organelle endoplasmic reticulum cytoplasm organelle membrane
VA [auth 2]	Protein transport protein Sec61 subunit beta	macromolecule transmembrane transporter activity active transmembrane transporter activity protein transporter activity primary active transmembrane transporter activity ATPase-coupled transmembrane transporter activity protein transmembrane transporter activity protein-transporting ATPase activity transporter activity transmembrane transporter activity ATP-dependent activity GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity macromolecule transmembrane transporter activity active transmembrane transporter activity protein transporter activity primary active transmembrane transporter activity ATPase-coupled transmembrane transporter activity protein transmembrane transporter activity protein-transporting ATPase activity transporter activity transmembrane transporter activity ATP-dependent activity GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity ribonucleoprotein complex binding protein-containing complex binding binding ribosome binding	establishment of protein localization cellular localization nitrogen compound transport transport protein targeting localization protein transmembrane transport establishment of localization in cell post-translational protein targeting to membrane, translocation intracellular protein localization establishment of protein localization to endoplasmic reticulum establishment of protein localization to membrane intracellular protein transmembrane transport intracellular transport establishment of protein localization cellular localization nitrogen compound transport transport protein targeting localization protein transmembrane transport establishment of localization in cell post-translational protein targeting to membrane, translocation intracellular protein localization establishment of protein localization to endoplasmic reticulum establishment of protein localization to membrane intracellular protein transmembrane transport intracellular transport post-translational protein targeting to endoplasmic reticulum membrane localization within membrane establishment of localization protein targeting to membrane transmembrane transport establishment of protein localization to organelle protein transport macromolecule localization cellular process intracellular protein transport protein targeting to ER SRP-dependent cotranslational protein targeting to membrane cotranslational protein targeting to membrane SRP-dependent cotranslational protein targeting to membrane, translocation	membrane-bounded organelle protein-containing complex intracellular anatomical structure Sec61 translocon complex membrane protein complex endomembrane system rough endoplasmic reticulum endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure bounding membrane of organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane membrane-bounded organelle protein-containing complex intracellular anatomical structure Sec61 translocon complex membrane protein complex endomembrane system rough endoplasmic reticulum endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure bounding membrane of organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane organelle subcompartment membrane intracellular membrane-bounded organelle translocon complex rough endoplasmic reticulum membrane organelle endoplasmic reticulum cytoplasm organelle membrane endoplasmic reticulum Sec complex
WA [auth 3]	Protein transport protein Sec61 gamma	-	-	-
XA [auth 4]	Coiled-coil domain containing 47	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding protein folding chaperone ribonucleoprotein complex binding protein-containing complex binding ribosome binding	inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis endoplasmic reticulum calcium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis cellular response to stimulus regulation of biological process inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis endoplasmic reticulum calcium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation response to biotic stimulus intracellular signal transduction cell communication cellular response to biotic stimulus ER overload response cellular response to stress response to stress ER-nucleus signaling pathway cellular process signal transduction response to endoplasmic reticulum stress catabolic process proteolysis involved in protein catabolic process response to nitrogen compound proteasomal protein catabolic process primary metabolic process protein catabolic process macromolecule catabolic process ERAD pathway response to chemical proteolysis metabolic process protein metabolic process macromolecule metabolic process membrane organization establishment of protein localization cellular localization multi-pass transmembrane protein insertion into ER membrane establishment of protein localization to membrane localization within membrane endoplasmic reticulum organization establishment of localization cellular component organization localization organelle organization protein localization to organelle macromolecule localization intracellular protein localization cellular component organization or biogenesis protein insertion into membrane protein insertion into ER membrane endomembrane system organization developmental process multicellular organism development multicellular organismal process anatomical structure development post-embryonic development	protein-containing complex protein folding chaperone complex intracellular protein-containing complex cellular anatomical structure intracellular anatomical structure multi-pass translocon complex cytoplasm ER membrane insertion complex cytosol membrane-bounded organelle organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system protein-containing complex protein folding chaperone complex intracellular protein-containing complex cellular anatomical structure intracellular anatomical structure multi-pass translocon complex cytoplasm ER membrane insertion complex cytosol membrane-bounded organelle organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system rough endoplasmic reticulum endoplasmic reticulum subcompartment intracellular organelle bounding membrane of organelle rough endoplasmic reticulum membrane organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane endoplasmic reticulum membrane
YA [auth 5]	PAT complex subunit Asterix	protein folding chaperone	membrane organization establishment of protein localization cellular localization multi-pass transmembrane protein insertion into ER membrane establishment of protein localization to membrane localization within membrane endoplasmic reticulum organization establishment of localization cellular component organization localization organelle organization protein localization to organelle macromolecule localization cellular process membrane organization establishment of protein localization cellular localization multi-pass transmembrane protein insertion into ER membrane establishment of protein localization to membrane localization within membrane endoplasmic reticulum organization establishment of localization cellular component organization localization organelle organization protein localization to organelle macromolecule localization cellular process intracellular protein localization cellular component organization or biogenesis protein insertion into membrane protein insertion into ER membrane endomembrane system organization	protein-containing complex protein folding chaperone complex intracellular protein-containing complex cellular anatomical structure intracellular anatomical structure multi-pass translocon complex cytoplasm ER membrane insertion complex cytosol membrane-bounded organelle organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system protein-containing complex protein folding chaperone complex intracellular protein-containing complex cellular anatomical structure intracellular anatomical structure multi-pass translocon complex cytoplasm ER membrane insertion complex cytosol membrane-bounded organelle organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane endoplasmic reticulum membrane
ZA [auth 7]	Nicalin	-	cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process response to stimulus signaling biological regulation regulation of signal transduction cell communication regulation of response to stimulus regulation of cell communication cellular process signal transduction	membrane-bounded organelle intracellular anatomical structure organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane membrane-bounded organelle intracellular anatomical structure organelle subcompartment membrane intracellular membrane-bounded organelle endomembrane system endoplasmic reticulum subcompartment intracellular organelle cellular anatomical structure organelle nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum cytoplasm organelle membrane endoplasmic reticulum membrane
AB [auth 6]	Transmembrane protein 147	ribonucleoprotein complex binding protein-containing complex binding binding ribosome binding	cellular localization protein localization to nucleus localization within membrane protein localization to membrane protein localization to nuclear envelope localization protein localization to organelle macromolecule localization cellular process intracellular protein localization protein localization to nuclear inner membrane membrane organization establishment of protein localization multi-pass transmembrane protein insertion into ER membrane cellular localization protein localization to nucleus localization within membrane protein localization to membrane protein localization to nuclear envelope localization protein localization to organelle macromolecule localization cellular process intracellular protein localization protein localization to nuclear inner membrane membrane organization establishment of protein localization multi-pass transmembrane protein insertion into ER membrane establishment of protein localization to membrane endoplasmic reticulum organization establishment of localization cellular component organization organelle organization cellular component organization or biogenesis protein insertion into membrane protein insertion into ER membrane endomembrane system organization	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex intracellular anatomical structure multi-pass translocon complex cytoplasm ER membrane insertion complex cytosol membrane-bounded organelle nuclear membrane nucleus intracellular membrane-bounded organelle cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex intracellular anatomical structure multi-pass translocon complex cytoplasm ER membrane insertion complex cytosol membrane-bounded organelle nuclear membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope organelle membrane organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum endoplasmic reticulum membrane
BB [auth 8]	Calcium load-activated calcium channel	-	-	-
CB [auth K]	28S ribosomal RNA	-	-	-
DB [auth 9]	Obligate partner of TMCO1 insertase	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR022669	Large ribosomal subunit protein uL2, C-terminal	Domain
A	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
A	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
A	IPR022671	Large ribosomal subunit protein uL2, conserved site	Conserved Site
A	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
A	IPR022666	Large ribosomal subunit protein uL2, RNA-binding domain	Domain
A	IPR014726	Large ribosomal subunit protein uL2, domain 3	Homologous Superfamily
A	IPR023672	Large ribosomal subunit protein uL2, archaeal-eukaryota type	Family
A	IPR002171	Large ribosomal subunit protein uL2	Family
B [auth C]	IPR025755	Large ribosomal subunit protein uL4, C-terminal domain	Domain
B [auth C]	IPR002136	Large ribosomal subunit protein uL4	Family
B [auth C]	IPR013000	Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved site	Conserved Site
B [auth C]	IPR045240	Large ribosomal subunit protein uL4, eukaryotic and archaeal type	Family
B [auth C]	IPR023574	Large ribosomal subunit protein uL4 domain superfamily	Homologous Superfamily
C [auth D]	IPR005485	Large ribosomal subunit protein uL18, eukaryotic/archaeal	Family
C [auth D]	IPR025607	Large ribosomal subunit protein uL18, C-terminal, eukaryotes	Domain
D [auth E]	IPR005568	Large ribosomal subunit protein uL6, N-terminal	Domain
D [auth E]	IPR049633	Large ribosomal subunit protein eL6, conserved site	Conserved Site
D [auth E]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
D [auth E]	IPR041997	Large ribosomal subunit protein eL6, KOW domain	Domain
D [auth E]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
D [auth E]	IPR000915	Large ribosomal subunit protein eL6	Family
E [auth F]	IPR035808	Large ribosomal subunit protein uL30, eukaryotic/archaeal	Domain
E [auth F]	IPR012988	Large ribosomal subunit protein uL30, N-terminal, eukaryotes	Domain
E [auth F]	IPR036919	Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily	Homologous Superfamily
E [auth F]	IPR039699	Large ribosomal subunit protein uL30	Family
E [auth F]	IPR005998	Large ribosomal subunit protein uL30, eukaryotic	Family
E [auth F]	IPR016082	Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain	Domain
E [auth F]	IPR018038	Large ribosomal subunit protein uL30, conserved site	Conserved Site
F [auth G]	IPR050257	Large ribosomal subunit protein eL8/uL1-like	Family
F [auth G]	IPR004038	Ribosomal protein eL8/eL30/eS12/Gadd45	Domain
F [auth G]	IPR029064	Ribosomal protein eL30-like superfamily	Homologous Superfamily
F [auth G]	IPR018492	Ribosomal protein eL8/Nhp2 family	Family
F [auth G]	IPR001921	Large ribosomal subunit protein eL8, eukaryota	Family
G [auth H]	IPR020040	Large ribosomal subunit protein uL6, alpha-beta domain	Domain
G [auth H]	IPR002359	Large ribosomal subunit protein uL6, conserved site-2	Conserved Site
G [auth H]	IPR036789	Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily	Homologous Superfamily
G [auth H]	IPR000702	Large ribosomal subunit protein uL6-like	Family
H [auth I]	IPR036920	Large ribosomal subunit protein uL16 superfamily	Homologous Superfamily
H [auth I]	IPR001197	Large ribosomal subunit protein uL16, eukaryotes/archaea	Family
H [auth I]	IPR016180	Large ribosomal subunit protein uL16 domain	Domain
H [auth I]	IPR047873	Large ribosomal subunit protein uL16	Family
H [auth I]	IPR018255	Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaea	Conserved Site
I [auth J]	IPR020929	Large ribosomal subunit protein uL5, conserved site	Conserved Site
I [auth J]	IPR022803	Large ribosomal subunit protein uL5 domain superfamily	Homologous Superfamily
I [auth J]	IPR031309	Large ribosomal subunit protein uL5, C-terminal	Domain
I [auth J]	IPR031310	Large ribosomal subunit protein uL5, N-terminal	Domain
I [auth J]	IPR002132	Large ribosomal subunit protein uL5	Family
K [auth M]	IPR039660	Large ribosomal subunit protein eL14	Family
K [auth M]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
K [auth M]	IPR002784	Large ribosomal subunit protein eL14 domain	Domain
K [auth M]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
L [auth N]	IPR012678	Ribosomal protein uL23/eL15/eS24 core domain superfamily	Homologous Superfamily
L [auth N]	IPR020925	Large ribosomal subunit protein eL15, conserved site	Conserved Site
L [auth N]	IPR024794	Large ribosomal subunit protein eL15 core domain superfamily	Homologous Superfamily
L [auth N]	IPR000439	Large ribosomal subunit protein eL15	Family
N [auth P]	IPR018260	Large ribosomal subunit protein uL22, conserved site	Conserved Site
N [auth P]	IPR036394	Ribosomal protein uL22 superfamily	Homologous Superfamily
N [auth P]	IPR001063	Large ribosomal subunit protein uL22	Family
N [auth P]	IPR005721	Large ribosomal subunit protein uL22, eukaryotic/archaeal	Family
P [auth R]	IPR015972	Large ribosomal subunit protein eL19, domain 1	Homologous Superfamily
P [auth R]	IPR039547	Large ribosomal subunit protein eL19	Family
P [auth R]	IPR023638	Large ribosomal subunit protein eL19, conserved site	Conserved Site
P [auth R]	IPR035970	Large ribosomal subunit protein eL19 superfamily	Homologous Superfamily
P [auth R]	IPR000196	Large ribosomal subunit protein eL19 domain	Domain
P [auth R]	IPR033935	Large ribosomal subunit protein eL19, eukaryotic	Domain
R [auth T]	IPR018259	Large ribosomal subunit protein eL21, conserved site	Conserved Site
R [auth T]	IPR036948	Large ribosomal subunit protein eL21 superfamily	Homologous Superfamily
R [auth T]	IPR001147	Large ribosomal subunit protein eL21	Family
R [auth T]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
S [auth U]	IPR002671	Large ribosomal subunit protein eL22	Family
S [auth U]	IPR038526	Large ribosomal subunit protein eL22 superfamily	Homologous Superfamily
T [auth V]	IPR036853	Large ribosomal subunit protein uL14 superfamily	Homologous Superfamily
T [auth V]	IPR000218	Large ribosomal subunit protein uL14	Family
T [auth V]	IPR019972	Large ribosomal subunit protein uL14, conserved site	Conserved Site
U [auth W]	IPR011017	TRASH domain	Domain
U [auth W]	IPR056366	Large ribosomal subunit protein eL24	Family
U [auth W]	IPR000988	Large ribosomal subunit protein eL24-related, N-terminal	Domain
U [auth W]	IPR023442	Large ribosomal subunit protein eL24, conserved site	Conserved Site
U [auth W]	IPR038630	Ribosomal protein L24e/L24 superfamily	Homologous Superfamily
V [auth X]	IPR012678	Ribosomal protein uL23/eL15/eS24 core domain superfamily	Homologous Superfamily
V [auth X]	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
V [auth X]	IPR005633	Large ribosomal subunit protein uL23, N-terminal	Domain
V [auth X]	IPR019985	Large ribosomal subunit protein uL23	Family
V [auth X]	IPR001014	Large ribosomal subunit protein uL23, conserved site	Conserved Site
V [auth X]	IPR013025	Large ribosomal subunit protein uL23-like	Family
W [auth Y]	IPR041988	Large ribosomal subunit protein uL24, KOW domain	Domain
W [auth Y]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
W [auth Y]	IPR005824	KOW	Domain
W [auth Y]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
W [auth Y]	IPR005756	Large ribosomal subunit protein uL24, eukaryotic/archaeal	Family
W [auth Y]	IPR005825	Large ribosomal subunit protein uL24, conserved site	Conserved Site
X [auth Z]	IPR018262	Large ribosomal subunit protein eL27, conserved site	Conserved Site
X [auth Z]	IPR038655	Large ribosomal subunit protein eL27 superfamily	Homologous Superfamily
X [auth Z]	IPR005824	KOW	Domain
X [auth Z]	IPR008991	Translation protein SH3-like domain superfamily	Homologous Superfamily
X [auth Z]	IPR001141	Large ribosomal subunit protein eL27	Family
X [auth Z]	IPR041991	Large ribosomal subunit protein eL27, KOW domain	Domain
Y [auth a]	IPR027386	Ribosomal uL15, N-terminal	Homologous Superfamily
Y [auth a]	IPR021131	Large ribosomal subunit protein uL15/eL18	Domain
Y [auth a]	IPR030878	Large ribosomal subunit protein uL15	Family
Y [auth a]	IPR001196	Large ribosomal subunit protein uL15, conserved site	Conserved Site
Y [auth a]	IPR036227	Large ribosomal subunit protein uL15/eL18 superfamily	Homologous Superfamily
Z [auth b]	IPR002673	Large ribosomal subunit protein eL29	Family
AA [auth c]	IPR022991	Large ribosomal subunit protein eL30, conserved site	Conserved Site
AA [auth c]	IPR004038	Ribosomal protein eL8/eL30/eS12/Gadd45	Domain
AA [auth c]	IPR000231	Large ribosomal subunit protein eL30	Family
AA [auth c]	IPR039109	Large ribosomal subunit protein eL30-like	Family
AA [auth c]	IPR029064	Ribosomal protein eL30-like superfamily	Homologous Superfamily
BA [auth d]	IPR020052	Large ribosomal subunit protein eL31, conserved site	Conserved Site
BA [auth d]	IPR023621	Large ribosomal subunit protein eL31 domain superfamily	Homologous Superfamily
BA [auth d]	IPR000054	Large ribosomal subunit protein eL31	Family
CA [auth e]	IPR036351	Large ribosomal subunit protein eL32 superfamily	Homologous Superfamily
CA [auth e]	IPR001515	Large ribosomal subunit protein eL32	Family
CA [auth e]	IPR018263	Large ribosomal subunit protein eL32, conserved site	Conserved Site
DA [auth f]	IPR038661	Large ribosomal subunit protein eL33 superfamily	Homologous Superfamily
DA [auth f]	IPR009000	Translation protein, beta-barrel domain superfamily	Homologous Superfamily
DA [auth f]	IPR001780	Large ribosomal subunit protein eL33	Family
DA [auth f]	IPR018266	Large ribosomal subunit protein eL33, conserved site	Conserved Site
EA [auth g]	IPR008195	Large ribosomal subunit protein eL34	Family
EA [auth g]	IPR038562	Large ribosomal subunit protein eL34, C-terminal domain superfamily	Homologous Superfamily
EA [auth g]	IPR018065	Large ribosomal subunit protein eL34, conserved site	Conserved Site
FA [auth h]	IPR045059	Large ribosomal subunit protein uL29, eukaryotes	Family
FA [auth h]	IPR001854	Large ribosomal subunit protein uL29	Family
FA [auth h]	IPR036049	Large ribosomal subunit protein uL29 superfamily	Homologous Superfamily
FA [auth h]	IPR018254	Large ribosomal subunit protein uL29, conserved site	Conserved Site
GA [auth i]	IPR000509	Large ribosomal subunit protein eL36	Family
GA [auth i]	IPR038097	Large ribosomal subunit protein eL36 domain superfamily	Homologous Superfamily
HA [auth j]	IPR011331	Large ribosomal subunit protein eL37/eL43	Homologous Superfamily
HA [auth j]	IPR001569	Large ribosomal subunit protein eL37	Family
HA [auth j]	IPR018267	Large ribosomal subunit protein eL37, conserved site	Conserved Site
HA [auth j]	IPR011332	Zinc-binding ribosomal protein	Homologous Superfamily
IA [auth k]	IPR002675	Large ribosomal subunit protein eL38	Family
IA [auth k]	IPR038464	Large ribosomal subunit protein eL38 superfamily	Homologous Superfamily
JA [auth l]	IPR023626	Large ribosomal subunit protein eL39 domain superfamily	Homologous Superfamily
JA [auth l]	IPR000077	Large ribosomal subunit protein eL39	Family
JA [auth l]	IPR020083	Large ribosomal subunit protein eL39, conserved site	Conserved Site
KA [auth m]	IPR019956	Ubiquitin domain	Domain
KA [auth m]	IPR019954	Ubiquitin conserved site	Conserved Site
KA [auth m]	IPR050158	Ubiquitin and ubiquitin-like	Family
KA [auth m]	IPR001975	Large ribosomal subunit protein eL40 domain	Domain
KA [auth m]	IPR038587	Large ribosomal subunit protein eL40 superfamily	Homologous Superfamily
KA [auth m]	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
KA [auth m]	IPR000626	Ubiquitin-like domain	Domain
LA [auth n]	IPR007836	Large ribosomal subunit protein eS32	Family
MA [auth o]	IPR053708	Eukaryotic Ribosomal Large Subunit eL42	Homologous Superfamily
MA [auth o]	IPR011332	Zinc-binding ribosomal protein	Homologous Superfamily
MA [auth o]	IPR000552	Large ribosomal subunit protein eL42	Family
NA [auth p]	IPR002674	Large ribosomal subunit protein eL43	Family
NA [auth p]	IPR011332	Zinc-binding ribosomal protein	Homologous Superfamily
NA [auth p]	IPR011331	Large ribosomal subunit protein eL37/eL43	Homologous Superfamily
PA [auth r]	IPR029004	Ribosomal eL28/Mak16	Domain
PA [auth r]	IPR002672	Large ribosomal subunit protein eL28	Family
SA [auth w]	IPR019926	Large ribosomal subunit protein uL3, conserved site	Conserved Site
SA [auth w]	IPR009000	Translation protein, beta-barrel domain superfamily	Homologous Superfamily
SA [auth w]	IPR045077	Large ribosomal subunit protein uL3, archaeal/eukaryotic-type	Family
SA [auth w]	IPR044892	Ribosomal protein L3, domain 3, archaeal-type superfamily	Homologous Superfamily
SA [auth w]	IPR000597	Large ribosomal subunit protein uL3	Family
UA [auth 1]	IPR002208	SecY/SEC61-alpha family	Family
UA [auth 1]	IPR030659	SecY conserved site	Conserved Site
UA [auth 1]	IPR023201	SecY domain superfamily	Homologous Superfamily
UA [auth 1]	IPR019561	Translocon Sec61/SecY, plug domain	Domain
VA [auth 2]	IPR016482	Protein transport protein SecG/Sec61-beta/Sbh	Family
VA [auth 2]	IPR030671	Protein transport Sec61-beta/Sbh	Family
XA [auth 4]	IPR012879	PAT complex subunit CCDC47	Family
YA [auth 5]	IPR005351	PAT complex subunit Asterix	Family
ZA [auth 7]	IPR007484	Peptidase M28	Domain
ZA [auth 7]	IPR016574	Nicalin	Family
AB [auth 6]	IPR019164	Transmembrane protein 147	Family

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
AB [auth 6], UA [auth 1], VA [auth 2], XA [auth 4], YA [auth 5] AB [auth 6], UA [auth 1], VA [auth 2], XA [auth 4], YA [auth 5], ZA [auth 7]	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Sec, Translocase, and Insertase Proteins	80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the Sec61 translocon