7UMS | pdb_00007ums

Structure of the VP5/VP8 assembly from the human rotavirus strain CDC-9 in complex with antibody 41 - Upright conformation

External Resource: Annotation

Domain Annotation: ECOD Classification
SAbDab Antibody Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth 2]	VP4_helical,Rota_VP4_MID	e7ums21	A: beta sandwiches	X: VP4 membrane interaction domain (From Topology)	H: VP4 membrane interaction domain (From Topology)	T: VP4 membrane interaction domain	F: VP4_helical,Rota_VP4_MID	ECOD (1.6)
D [auth 2]	VP4_helical	e7ums22	A: alpha complex topology	X: Helical domain in outer capsid protein VP4 (From Topology)	H: Helical domain in outer capsid protein VP4 (From Topology)	T: Helical domain in outer capsid protein VP4	F: VP4_helical	ECOD (1.6)
F [auth 3]	VP4_helical,Rota_VP4_MID	e7ums31	A: beta sandwiches	X: VP4 membrane interaction domain (From Topology)	H: VP4 membrane interaction domain (From Topology)	T: VP4 membrane interaction domain	F: VP4_helical,Rota_VP4_MID	ECOD (1.6)
F [auth 3]	VP4_helical	e7ums32	A: alpha complex topology	X: Helical domain in outer capsid protein VP4 (From Topology)	H: Helical domain in outer capsid protein VP4 (From Topology)	T: Helical domain in outer capsid protein VP4	F: VP4_helical	ECOD (1.6)
B [auth 1]	VP4_helical,Rota_VP4_MID	e7ums12	A: beta sandwiches	X: VP4 membrane interaction domain (From Topology)	H: VP4 membrane interaction domain (From Topology)	T: VP4 membrane interaction domain	F: VP4_helical,Rota_VP4_MID	ECOD (1.6)
B [auth 1]	VP4_helical	e7ums11	A: alpha complex topology	X: Helical domain in outer capsid protein VP4 (From Topology)	H: Helical domain in outer capsid protein VP4 (From Topology)	T: Helical domain in outer capsid protein VP4	F: VP4_helical	ECOD (1.6)
G [auth 4]	C1-set_1	e7ums42	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: C1-set_1	ECOD (1.6)
G [auth 4]	V-set_12	e7ums41	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
I [auth 6]	C1-set_1	e7ums61	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: C1-set_1	ECOD (1.6)
I [auth 6]	V-set_12	e7ums62	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_12	ECOD (1.6)
J [auth 7]	C1-set	e7ums72	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: C1-set	ECOD (1.6)
J [auth 7]	V-set_3	e7ums71	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_3	ECOD (1.6)
H [auth 5]	C1-set	e7ums52	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: C1-set	ECOD (1.6)
H [auth 5]	V-set_3	e7ums51	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_3	ECOD (1.6)
AA [auth Q]	Rota_Capsid_VP6_2nd	e7umsQ2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
AA [auth Q]	Rota_Capsid_VP6_1st	e7umsQ1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
K [auth A]	Rota_Capsid_VP6_2nd	e7umsA1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
K [auth A]	Rota_Capsid_VP6_1st	e7umsA2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
Q [auth G]	Rota_Capsid_VP6_2nd	e7umsG2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
Q [auth G]	Rota_Capsid_VP6_1st	e7umsG1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
R [auth H]	Rota_Capsid_VP6_2nd	e7umsH2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
R [auth H]	Rota_Capsid_VP6_1st	e7umsH1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
U [auth K]	Rota_Capsid_VP6_2nd	e7umsK2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
U [auth K]	Rota_Capsid_VP6_1st	e7umsK1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
W [auth M]	Rota_Capsid_VP6_2nd	e7umsM2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
W [auth M]	Rota_Capsid_VP6_1st	e7umsM1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
X [auth N]	Rota_Capsid_VP6_2nd	e7umsN2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
X [auth N]	Rota_Capsid_VP6_1st	e7umsN1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
Z [auth P]	Rota_Capsid_VP6_2nd	e7umsP2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
Z [auth P]	Rota_Capsid_VP6_1st	e7umsP1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
Y [auth O]	Rota_Capsid_VP6_2nd	e7umsO1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
Y [auth O]	Rota_Capsid_VP6_1st	e7umsO2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
V [auth L]	Rota_Capsid_VP6_2nd	e7umsL1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
V [auth L]	Rota_Capsid_VP6_1st	e7umsL2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
T [auth J]	Rota_Capsid_VP6_2nd	e7umsJ1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
T [auth J]	Rota_Capsid_VP6_1st	e7umsJ2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
S [auth I]	Rota_Capsid_VP6_2nd	e7umsI1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
S [auth I]	Rota_Capsid_VP6_1st	e7umsI2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
P [auth F]	Rota_Capsid_VP6_2nd	e7umsF2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
P [auth F]	Rota_Capsid_VP6_1st	e7umsF1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
O [auth E]	Rota_Capsid_VP6_2nd	e7umsE2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
O [auth E]	Rota_Capsid_VP6_1st	e7umsE1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
N [auth D]	Rota_Capsid_VP6_2nd	e7umsD1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
N [auth D]	Rota_Capsid_VP6_1st	e7umsD2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
M [auth C]	Rota_Capsid_VP6_2nd	e7umsC1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
M [auth C]	Rota_Capsid_VP6_1st	e7umsC2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
L [auth B]	Rota_Capsid_VP6_2nd	e7umsB2	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
L [auth B]	Rota_Capsid_VP6_1st	e7umsB1	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
BA [auth R]	Rota_Capsid_VP6_2nd	e7umsR1	A: beta sandwiches	X: jelly-roll	H: Viral protein domain (From Topology)	T: Viral protein domain	F: Rota_Capsid_VP6_2nd	ECOD (1.6)
BA [auth R]	Rota_Capsid_VP6_1st	e7umsR2	A: alpha bundles	X: A virus capsid protein alpha-helical domain (From Topology)	H: A virus capsid protein alpha-helical domain (From Topology)	T: A virus capsid protein alpha-helical domain	F: Rota_Capsid_VP6_1st	ECOD (1.6)
CA [auth a]	VP7_2nd	e7umsa2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
CA [auth a]	VP7_1st	e7umsa1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
EA [auth c]	VP7_2nd	e7umsc1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
EA [auth c]	VP7_1st	e7umsc2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
FA [auth d]	VP7_2nd	e7umsd2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
FA [auth d]	VP7_1st	e7umsd1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
GA [auth e]	VP7_2nd	e7umse2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
GA [auth e]	VP7_1st	e7umse1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
JA [auth h]	VP7_2nd	e7umsh1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
JA [auth h]	VP7_1st	e7umsh2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
KA [auth i]	VP7_2nd	e7umsi2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
KA [auth i]	VP7_1st	e7umsi1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
LA [auth j]	VP7_2nd	e7umsj1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
LA [auth j]	VP7_1st	e7umsj2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
MA [auth k]	VP7_2nd	e7umsk2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
MA [auth k]	VP7_1st	e7umsk1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
NA [auth l]	VP7_2nd	e7umsl2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
NA [auth l]	VP7_1st	e7umsl1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
PA [auth n]	VP7_2nd	e7umsn2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
PA [auth n]	VP7_1st	e7umsn1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
RA [auth p]	VP7_2nd	e7umsp2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
RA [auth p]	VP7_1st	e7umsp1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
TA [auth r]	VP7_2nd	e7umsr2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
TA [auth r]	VP7_1st	e7umsr1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
SA [auth q]	VP7_2nd	e7umsq2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
SA [auth q]	VP7_1st	e7umsq1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
QA [auth o]	VP7_2nd	e7umso1	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
QA [auth o]	VP7_1st	e7umso2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
OA [auth m]	VP7_2nd	e7umsm2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
OA [auth m]	VP7_1st	e7umsm1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
IA [auth g]	VP7_2nd	e7umsg2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
IA [auth g]	VP7_1st	e7umsg1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
HA [auth f]	VP7_2nd	e7umsf2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
HA [auth f]	VP7_1st	e7umsf1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)
DA [auth b]	VP7_2nd	e7umsb2	A: beta sandwiches	X: jelly-roll	H: Jelly-roll domain in outer capsid glycoprotein VP7 (From Topology)	T: Jelly-roll domain in outer capsid glycoprotein VP7	F: VP7_2nd	ECOD (1.6)
DA [auth b]	VP7_1st	e7umsb1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavodoxin-like domain in outer capsid glycoprotein VP7 (From Topology)	T: Flavodoxin-like domain in outer capsid glycoprotein VP7	F: VP7_1st	ECOD (1.6)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
G [auth 4], I [auth 6]	Heavy Chain	IGHV3	-	outer capsid protein vp5* \| outer capsid protein vp8*	SAbDab (2025-10-03)
H [auth 5], J [auth 7]	Light Chain	IGLV6	Lambda	outer capsid protein vp5* \| outer capsid protein vp8*	SAbDab (2025-10-03)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth T], C [auth U], E [auth V]	PF00426	Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain (VP4_haemagglut)	Outer Capsid protein VP4 (Hemagglutinin) Concanavalin-like domain	This entry represents the N-terminal concanavalin-like domain from the VP4 protein of rotavirus.	Domain
B [auth 1], D [auth 2], F [auth 3]	PF17477	Rotavirus VP4 membrane interaction domain (Rota_VP4_MID)	Rotavirus VP4 membrane interaction domain	This entry represents the VP4 membrane interaction domain.	Domain
B [auth 1], D [auth 2], F [auth 3]	PF17478	Rotavirus VP4 helical domain (VP4_helical)	Rotavirus VP4 helical domain		Domain
AA [auth Q], BA [auth R], K [auth A], L [auth B], M [auth C], AA [auth Q], BA [auth R], K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], P [auth F], Q [auth G], R [auth H], S [auth I], T [auth J], U [auth K], V [auth L], W [auth M], X [auth N], Y [auth O], Z [auth P]	PF00980	Rotavirus major capsid protein VP6 (Rota_Capsid_VP6)	Rotavirus major capsid protein VP6	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth T], C [auth U], E [auth V]	Outer capsid protein VP8*	-	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated disruption of host anatomical structure symbiont entry into host cell via permeabilization of host membrane symbiont-mediated disruption of host cellular anatomical structure symbiont-mediated perturbation of host membrane permeabilization of host organelle membrane involved in viral entry into host cell symbiont entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated disruption of host anatomical structure symbiont entry into host cell via permeabilization of host membrane symbiont-mediated disruption of host cellular anatomical structure symbiont-mediated perturbation of host membrane permeabilization of host organelle membrane involved in viral entry into host cell symbiont entry into host cell symbiont entry into host disruption of anatomical structure in another organism	host cellular component host intracellular part host cytoskeleton cellular anatomical structure host cell part host intracellular region other organism part host intracellular organelle membrane host intracellular membrane-bounded organelle host cell cytoplasm part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell plasma membrane host cellular component host intracellular part host cytoskeleton cellular anatomical structure host cell part host intracellular region other organism part host intracellular organelle membrane host intracellular membrane-bounded organelle host cell cytoplasm part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell plasma membrane host cell membrane viral capsid icosahedral viral capsid virion component viral outer capsid host cell endoplasmic reticulum host cell rough endoplasmic reticulum
B [auth 1], D [auth 2], F [auth 3]	Outer capsid protein VP5*	-	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated disruption of host anatomical structure symbiont entry into host cell via permeabilization of host membrane symbiont-mediated disruption of host cellular anatomical structure symbiont-mediated perturbation of host membrane permeabilization of host organelle membrane involved in viral entry into host cell symbiont entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated disruption of host anatomical structure symbiont entry into host cell via permeabilization of host membrane symbiont-mediated disruption of host cellular anatomical structure symbiont-mediated perturbation of host membrane permeabilization of host organelle membrane involved in viral entry into host cell symbiont entry into host cell symbiont entry into host disruption of anatomical structure in another organism	host cellular component host intracellular part host cytoskeleton cellular anatomical structure host cell part host intracellular region other organism part host intracellular organelle membrane host intracellular membrane-bounded organelle host cell cytoplasm part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell plasma membrane host cellular component host intracellular part host cytoskeleton cellular anatomical structure host cell part host intracellular region other organism part host intracellular organelle membrane host intracellular membrane-bounded organelle host cell cytoplasm part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm host cell plasma membrane host cell membrane viral capsid icosahedral viral capsid virion component viral outer capsid host cell endoplasmic reticulum host cell rough endoplasmic reticulum
G [auth 4], I [auth 6]	Fab 41 heavy chain	-	-	-
H [auth 5], J [auth 7]	Fab 41 light chain	-	-	-
AA [auth Q], BA [auth R], K [auth A], L [auth B], M [auth C], AA [auth Q], BA [auth R], K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], P [auth F], Q [auth G], R [auth H], S [auth I], T [auth J], U [auth K], V [auth L], W [auth M], X [auth N], Y [auth O], Z [auth P]	Intermediate capsid protein VP6	structural molecule activity cation binding ion binding binding metal ion binding small molecule binding host cell surface binding host cell surface receptor binding	membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane viral process cellular process cellular component organization or biogenesis membrane fusion involved in viral entry into host cell	virion component viral membrane viral envelope viral capsid icosahedral viral capsid viral intermediate capsid
CA [auth a], DA [auth b], EA [auth c], FA [auth d], GA [auth e], CA [auth a], DA [auth b], EA [auth c], FA [auth d], GA [auth e], HA [auth f], IA [auth g], JA [auth h], KA [auth i], LA [auth j], MA [auth k], NA [auth l], OA [auth m], PA [auth n], QA [auth o], RA [auth p], SA [auth q], TA [auth r]	Outer capsid glycoprotein VP7	cation binding ion binding binding metal ion binding small molecule binding	-	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host cell endoplasmic reticulum lumen host intracellular region membrane viral capsid host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle cellular anatomical structure host cell cytoplasm host cell part host cell endoplasmic reticulum lumen host intracellular region membrane viral capsid icosahedral viral capsid virion component viral outer capsid T=13 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth T], C [auth U], E [auth V]	IPR000416	Haemagglutinin outer capsid protein VP4, concanavalin-like domain	Domain
A [auth T], C [auth U], E [auth V]	IPR035330	Rotavirus VP4, membrane interaction domain	Domain
A [auth T], C [auth U], E [auth V]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A [auth T], C [auth U], E [auth V]	IPR035329	Rotavirus VP4 helical domain	Domain
A [auth T], C [auth U], E [auth V]	IPR042546	Outer capsid protein VP4	Family
A [auth T], C [auth U], E [auth V]	IPR038017	Rotavirus VP4, membrane interaction domain superfamily	Homologous Superfamily
B [auth 1], D [auth 2], F [auth 3]	IPR000416	Haemagglutinin outer capsid protein VP4, concanavalin-like domain	Domain
B [auth 1], D [auth 2], F [auth 3]	IPR035330	Rotavirus VP4, membrane interaction domain	Domain
B [auth 1], D [auth 2], F [auth 3]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
B [auth 1], D [auth 2], F [auth 3]	IPR035329	Rotavirus VP4 helical domain	Domain
B [auth 1], D [auth 2], F [auth 3]	IPR042546	Outer capsid protein VP4	Family
B [auth 1], D [auth 2], F [auth 3]	IPR038017	Rotavirus VP4, membrane interaction domain superfamily	Homologous Superfamily
AA [auth Q], BA [auth R], K [auth A], L [auth B], M [auth C], AA [auth Q], BA [auth R], K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], P [auth F], Q [auth G], R [auth H], S [auth I], T [auth J], U [auth K], V [auth L], W [auth M], X [auth N], Y [auth O], Z [auth P]	IPR001385	Rotavirus A/C, major capsid protein VP6	Family
AA [auth Q], BA [auth R], K [auth A], L [auth B], M [auth C], AA [auth Q], BA [auth R], K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], P [auth F], Q [auth G], R [auth H], S [auth I], T [auth J], U [auth K], V [auth L], W [auth M], X [auth N], Y [auth O], Z [auth P]	IPR008935	Virus capsid protein, alpha-helical	Homologous Superfamily
AA [auth Q], BA [auth R], K [auth A], L [auth B], M [auth C], AA [auth Q], BA [auth R], K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], P [auth F], Q [auth G], R [auth H], S [auth I], T [auth J], U [auth K], V [auth L], W [auth M], X [auth N], Y [auth O], Z [auth P]	IPR008980	Viral capsid/haemagglutinin protein	Homologous Superfamily
CA [auth a], DA [auth b], EA [auth c], FA [auth d], GA [auth e], CA [auth a], DA [auth b], EA [auth c], FA [auth d], GA [auth e], HA [auth f], IA [auth g], JA [auth h], KA [auth i], LA [auth j], MA [auth k], NA [auth l], OA [auth m], PA [auth n], QA [auth o], RA [auth p], SA [auth q], TA [auth r]	IPR042207	Glycoprotein VP7, domain 1	Homologous Superfamily
CA [auth a], DA [auth b], EA [auth c], FA [auth d], GA [auth e], CA [auth a], DA [auth b], EA [auth c], FA [auth d], GA [auth e], HA [auth f], IA [auth g], JA [auth h], KA [auth i], LA [auth j], MA [auth k], NA [auth l], OA [auth m], PA [auth n], QA [auth o], RA [auth p], SA [auth q], TA [auth r]	IPR001963	Glycoprotein VP7	Family
CA [auth a], DA [auth b], EA [auth c], FA [auth d], GA [auth e], CA [auth a], DA [auth b], EA [auth c], FA [auth d], GA [auth e], HA [auth f], IA [auth g], JA [auth h], KA [auth i], LA [auth j], MA [auth k], NA [auth l], OA [auth m], PA [auth n], QA [auth o], RA [auth p], SA [auth q], TA [auth r]	IPR042210	Glycoprotein VP7, domain 2	Homologous Superfamily