7W6L | pdb_00007w6l

The crystal structure of MLL3-RBBP5-ASH2L in complex with H3K4me0 peptide


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ESETe7w6lE1 A: beta barrelsX: beta-clipH: SET domain-like (From Topology)T: SET domain-likeF: SETECOD (1.6)
CSETe7w6lC1 A: beta barrelsX: beta-clipH: SET domain-like (From Topology)T: SET domain-likeF: SETECOD (1.6)
BSPRYe7w6lB1 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: SPRYECOD (1.6)
ASPRYe7w6lA1 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: SPRYECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C, E
PF00856SET domain (SET)SET domain- Family
A, B
PF00622SPRY domain (SPRY)SPRY domainSPRY Domain is named from SPla and the RYanodine Receptor and it is found in many eukaryotic proteins with a wide range of functions. It is a protein-interaction module involved in many important signalling pathways like RNA processing, regulation of ...SPRY Domain is named from SPla and the RYanodine Receptor and it is found in many eukaryotic proteins with a wide range of functions. It is a protein-interaction module involved in many important signalling pathways like RNA processing, regulation of histone H3 methylation, innate immunity or embryonic development [1,2,3,4]. It can be divided into 11 subfamilies based on amino acid sequence similarity or the presence of additional protein domains. The greater SPRY family is divided into the SPRY/B30.2 (which contains a PRY extension at the N-terminal) and SPRY-only sub-families which are preceded by a subdomain that is structurally similar to the PRY region [2]. SPRY/B30.2 structures revealed a bent beta-sandwich fold comprised of two beta-sheets. Distant homologues are domains in butyrophilin/ marenostrin/pyrin [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C, E
Histone-lysine N-methyltransferase 2C
D, F
Retinoblastoma-binding protein 5
G [auth M]Histone H3.3C
A, B
Set1/Ash2 histone methyltransferase complex subunit ASH2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C, E
IPR001965Zinc finger, PHD-typeDomain
C, E
IPR046341SET domain superfamilyHomologous Superfamily
C, E
IPR001214SET domainDomain
C, E
IPR019787Zinc finger, PHD-fingerDomain
C, E
IPR011011Zinc finger, FYVE/PHD-typeHomologous Superfamily
C, E
IPR037877HMT2C, PHD3Domain
C, E
IPR041968KMT2C, ePHD2Domain
C, E
IPR047004KMT2C, PHD2 domainDomain
C, E
IPR003616Post-SET domainDomain
C, E
IPR034732Extended PHD (ePHD) domainDomain
C, E
IPR041967KMT2C, ePHD1Domain
C, E
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
C, E
IPR003889FY-rich, C-terminalConserved Site
C, E
IPR000637HMG-I/HMG-Y, DNA-binding, conserved siteConserved Site
C, E
IPR047005KMT2C, PHD6 domainDomain
C, E
IPR003888FY-rich, N-terminalConserved Site
C, E
IPR001841Zinc finger, RING-typeDomain
C, E
IPR009071High mobility group box domainDomain
C, E
IPR047003KMT2C, PHD4 domainDomain
C, E
IPR036910High mobility group box domain superfamilyHomologous Superfamily
D, F
IPR037850Retinoblastoma-binding protein 5/Swd1Family
D, F
IPR001680WD40 repeatRepeat
D, F
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
G [auth M]IPR009072Histone-foldHomologous Superfamily
G [auth M]IPR007125Histone H2A/H2B/H3Domain
G [auth M]IPR000164Histone H3/CENP-AFamily
A, B
IPR053835Set1/Ash2 histone methyltransferase complex subunit ASH2-like, winged-helixDomain
A, B
IPR001870B30.2/SPRY domainDomain
A, B
IPR013320Concanavalin A-like lectin/glucanase domain superfamilyHomologous Superfamily
A, B
IPR043136B30.2/SPRY domain superfamilyHomologous Superfamily
A, B
IPR049455Set1/Ash2 histone methyltransferase complex subunit ASH2-like, PHD zinc fingerDomain
A, B
IPR037353Histone methyltransferase complex subunit ASH2Family
A, B
IPR003877SPRY domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
C, E
PharosQ8NEZ4
D, F
PharosQ15291
G [auth M]PharosQ6NXT2
A, B
PharosQ9UBL3