8CS9 | pdb_00008cs9

Composite reconstruction of Class 1 of the erythrocyte ankyrin-1 complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyAnkyrin repeat 8057716 3000154 SCOP2B (2022-06-29)
I [auth V]SCOP2B SuperfamilyPhoshotransferase/anion transport protein 8033412 3000490 SCOP2B (2022-06-29)
I [auth V]SCOP2B SuperfamilyNucleobase/cation symporter 2, NCS2-like 8092954 3002647 SCOP2B (2022-06-29)
J [auth e]SCOP2B SuperfamilyPhoshotransferase/anion transport protein 8033412 3000490 SCOP2B (2022-06-29)
J [auth e]SCOP2B SuperfamilyNucleobase/cation symporter 2, NCS2-like 8092954 3002647 SCOP2B (2022-06-29)
M [auth Y]SCOP2B SuperfamilyNucleobase/cation symporter 2, NCS2-like 8092954 3002647 SCOP2B (2022-06-29)
M [auth Y]SCOP2B SuperfamilyPhoshotransferase/anion transport protein 8033412 3000490 SCOP2B (2022-06-29)
N [auth f]SCOP2B SuperfamilyPhoshotransferase/anion transport protein 8033412 3000490 SCOP2B (2022-06-29)
N [auth f]SCOP2B SuperfamilyNucleobase/cation symporter 2, NCS2-like 8092954 3002647 SCOP2B (2022-06-29)
Q [auth Z]SCOP2B SuperfamilyPhoshotransferase/anion transport protein 8033412 3000490 SCOP2B (2022-06-29)
Q [auth Z]SCOP2B SuperfamilyNucleobase/cation symporter 2, NCS2-like 8092954 3002647 SCOP2B (2022-06-29)
R [auth g]SCOP2B SuperfamilyNucleobase/cation symporter 2, NCS2-like 8092954 3002647 SCOP2B (2022-06-29)
R [auth g]SCOP2B SuperfamilyPhoshotransferase/anion transport protein 8033412 3000490 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AAnk_2e8cs9A1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Ankyrin repeat (From Topology)T: Ankyrin repeatF: Ank_2ECOD (1.6)
E [auth X]Transglut_Ne8cs9X4 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Transglut_NECOD (1.6)
E [auth X]Transglut_C_1e8cs9X2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Transglut_C_1ECOD (1.6)
E [auth X]Transglut_Ce8cs9X3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Transglut_CECOD (1.6)
E [auth X]Transglut_coree8cs9X1 A: a+b complex topologyX: Cysteine proteinases-likeH: Cysteine proteinases (From Topology)T: Cysteine proteinasesF: Transglut_coreECOD (1.6)
B [auth K]F_UNCLASSIFIEDe8cs9K1 A: alpha complex topologyX: Ammonium transporter-related (From Homology)H: Ammonium transporter-relatedT: Ammonium transporterF: F_UNCLASSIFIEDECOD (1.6)
C [auth L]Ammonium_transp_1e8cs9L1 A: alpha complex topologyX: Ammonium transporter-related (From Homology)H: Ammonium transporter-relatedT: Ammonium transporterF: Ammonium_transp_1ECOD (1.6)
D [auth Q]Ammonium_transp_1e8cs9Q1 A: alpha complex topologyX: Ammonium transporter-related (From Homology)H: Ammonium transporter-relatedT: Ammonium transporterF: Ammonium_transp_1ECOD (1.6)
F [auth P]Glycophorin_Ae8cs9P1 A: extended segmentsX: Glycophorin-A transmembrane domain (From Topology)H: Glycophorin-A transmembrane domain (From Topology)T: Glycophorin-A transmembrane domainF: Glycophorin_AECOD (1.6)
G [auth R]Glycophorin_Ae8cs9R1 A: extended segmentsX: Glycophorin-A transmembrane domain (From Topology)H: Glycophorin-A transmembrane domain (From Topology)T: Glycophorin-A transmembrane domainF: Glycophorin_AECOD (1.6)
H [auth a]Glycophorin_Ae8cs9a1 A: extended segmentsX: Glycophorin-A transmembrane domain (From Topology)H: Glycophorin-A transmembrane domain (From Topology)T: Glycophorin-A transmembrane domainF: Glycophorin_AECOD (1.6)
K [auth S]Glycophorin_Ae8cs9S1 A: extended segmentsX: Glycophorin-A transmembrane domain (From Topology)H: Glycophorin-A transmembrane domain (From Topology)T: Glycophorin-A transmembrane domainF: Glycophorin_AECOD (1.6)
L [auth b]Glycophorin_Ae8cs9b1 A: extended segmentsX: Glycophorin-A transmembrane domain (From Topology)H: Glycophorin-A transmembrane domain (From Topology)T: Glycophorin-A transmembrane domainF: Glycophorin_AECOD (1.6)
O [auth T]Glycophorin_Ae8cs9T1 A: extended segmentsX: Glycophorin-A transmembrane domain (From Topology)H: Glycophorin-A transmembrane domain (From Topology)T: Glycophorin-A transmembrane domainF: Glycophorin_AECOD (1.6)
P [auth c]Glycophorin_Ae8cs9c1 A: extended segmentsX: Glycophorin-A transmembrane domain (From Topology)H: Glycophorin-A transmembrane domain (From Topology)T: Glycophorin-A transmembrane domainF: Glycophorin_AECOD (1.6)
I [auth V]HCO3_cotranspe8cs9V1 A: alpha complex topologyX: Uracil Transporter UraA (From Topology)H: Uracil Transporter UraA (From Topology)T: Uracil Transporter UraAF: HCO3_cotranspECOD (1.6)
I [auth V]Band_3_cytoe8cs9V2 A: a+b three layersX: Phoshotransferase/anion transport protein (From Topology)H: Phoshotransferase/anion transport protein (From Topology)T: Phoshotransferase/anion transport proteinF: Band_3_cytoECOD (1.6)
J [auth e]HCO3_cotranspe8cs9e1 A: alpha complex topologyX: Uracil Transporter UraA (From Topology)H: Uracil Transporter UraA (From Topology)T: Uracil Transporter UraAF: HCO3_cotranspECOD (1.6)
J [auth e]Band_3_cytoe8cs9e2 A: a+b three layersX: Phoshotransferase/anion transport protein (From Topology)H: Phoshotransferase/anion transport protein (From Topology)T: Phoshotransferase/anion transport proteinF: Band_3_cytoECOD (1.6)
M [auth Y]HCO3_cotranspe8cs9Y1 A: alpha complex topologyX: Uracil Transporter UraA (From Topology)H: Uracil Transporter UraA (From Topology)T: Uracil Transporter UraAF: HCO3_cotranspECOD (1.6)
M [auth Y]Band_3_cytoe8cs9Y2 A: a+b three layersX: Phoshotransferase/anion transport protein (From Topology)H: Phoshotransferase/anion transport protein (From Topology)T: Phoshotransferase/anion transport proteinF: Band_3_cytoECOD (1.6)
N [auth f]HCO3_cotranspe8cs9f1 A: alpha complex topologyX: Uracil Transporter UraA (From Topology)H: Uracil Transporter UraA (From Topology)T: Uracil Transporter UraAF: HCO3_cotranspECOD (1.6)
N [auth f]Band_3_cytoe8cs9f2 A: a+b three layersX: Phoshotransferase/anion transport protein (From Topology)H: Phoshotransferase/anion transport protein (From Topology)T: Phoshotransferase/anion transport proteinF: Band_3_cytoECOD (1.6)
Q [auth Z]HCO3_cotranspe8cs9Z1 A: alpha complex topologyX: Uracil Transporter UraA (From Topology)H: Uracil Transporter UraA (From Topology)T: Uracil Transporter UraAF: HCO3_cotranspECOD (1.6)
Q [auth Z]Band_3_cytoe8cs9Z2 A: a+b three layersX: Phoshotransferase/anion transport protein (From Topology)H: Phoshotransferase/anion transport protein (From Topology)T: Phoshotransferase/anion transport proteinF: Band_3_cytoECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00023Ankyrin repeat (Ank)Ankyrin repeat- Repeat
E [auth X]PF00868Transglutaminase family (Transglut_N)Transglutaminase familyDomain
E [auth X]PF00927Transglutaminase family, C-terminal ig like domain (Transglut_C)Transglutaminase family, C-terminal ig like domainDomain
E [auth X]PF01841Transglutaminase-like superfamily (Transglut_core)Transglutaminase-like superfamilyThis domain is found in animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that ...This domain is found in animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' [1]. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase [2], it is proposed that many, if not all, microbial homologues of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease. [3]
Domain
B [auth K]PF00909Ammonium Transporter Family (Ammonium_transp)Ammonium Transporter Family- Family
C [auth L],
D [auth Q]
PF00909Ammonium Transporter Family (Ammonium_transp)Ammonium Transporter Family- Family
PF00955HCO3- transporter integral membrane domain (HCO3_cotransp)HCO3- transporter integral membrane domainThis family contains Band 3 anion exchange proteins that exchange CL-/HCO3- such as Swiss:P48751. This family also includes cotransporters of Na+/HCO3- such as Swiss:O15153. Domain
PF07565Band 3 cytoplasmic domain (Band_3_cyto)Band 3 cytoplasmic domainThis family contains the cytoplasmic domain of the Band 3 anion exchange proteins that exchange Cl-/HCO3-. Band 3 constitutes the most abundant polypeptide in the red blood cell membrane, comprising 25% of the total membrane protein. The cytoplasmic ...This family contains the cytoplasmic domain of the Band 3 anion exchange proteins that exchange Cl-/HCO3-. Band 3 constitutes the most abundant polypeptide in the red blood cell membrane, comprising 25% of the total membrane protein. The cytoplasmic domain of band 3 functions primarily as an anchoring site for other membrane-associated proteins. Included among the protein ligands of cdb3 are ankyrin, protein 4.2, protein 4.1, glyceraldehyde-3-phosphate dehydrogenase (GAPDH), phosphofructokinase, aldolase, hemoglobin, hemichromes, and the protein tyrosine kinase (p72syk). [1]
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Ankyrin-1
E [auth X]Protein 4.2
B [auth K]Blood group Rh(CE) polypeptide
C [auth L],
D [auth Q]
Ammonium transporter Rh type A
F [auth P]Glycophorin-B- -
Glycophorin-A -
Band 3 anion transport protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036770Ankyrin repeat-containing domain superfamilyHomologous Superfamily
IPR040745Ankyrin, UPA domainDomain
IPR000906ZU5 domainDomain
IPR002110Ankyrin repeatRepeat
IPR011029Death-like domain superfamilyHomologous Superfamily
IPR051165Multifunctional Ankyrin Repeat Domain-Containing ProteinFamily
IPR000488Death domainDomain
E [auth X]IPR036985Transglutaminase-like superfamilyHomologous Superfamily
E [auth X]IPR036238Transglutaminase, C-terminal domain superfamilyHomologous Superfamily
E [auth X]IPR013808Transglutaminase, active siteActive Site
E [auth X]IPR013783Immunoglobulin-like foldHomologous Superfamily
E [auth X]IPR002931Transglutaminase-likeDomain
E [auth X]IPR014756Immunoglobulin E-setHomologous Superfamily
E [auth X]IPR038765Papain-like cysteine peptidase superfamilyHomologous Superfamily
E [auth X]IPR001102Transglutaminase, N-terminalDomain
E [auth X]IPR008958Transglutaminase, C-terminalDomain
E [auth X]IPR050779Protein-glutamine gamma-glutamyltransferasesFamily
E [auth X]IPR023608Protein-glutamine gamma-glutamyltransferase, animalFamily
B [auth K]IPR002229Blood group Rhesus C/E/D polypeptideFamily
B [auth K]IPR029020Ammonium/urea transporterHomologous Superfamily
B [auth K]IPR024041Ammonium transporter AmtB-like domainDomain
C [auth L],
D [auth Q]
IPR002229Blood group Rhesus C/E/D polypeptideFamily
C [auth L],
D [auth Q]
IPR029020Ammonium/urea transporterHomologous Superfamily
C [auth L],
D [auth Q]
IPR024041Ammonium transporter AmtB-like domainDomain
F [auth P]IPR018938Glycophorin, conserved siteConserved Site
F [auth P]IPR001195GlycophorinFamily
F [auth P]IPR049535Glycophorin A/BFamily
IPR018938Glycophorin, conserved siteConserved Site
IPR001195GlycophorinFamily
IPR049535Glycophorin A/BFamily
IPR013769Band 3 cytoplasmic domainDomain
IPR001717Anion exchange proteinFamily
IPR003020Bicarbonate transporter, eukaryoticFamily
IPR011531Bicarbonate transporter-like, transmembrane domainDomain
IPR002977Anion exchange protein 1Family
IPR016152Phosphotransferase/anion transporterHomologous Superfamily
IPR018241Anion exchange, conserved siteConserved Site

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP16157
E [auth X]PharosP16452
B [auth K]PharosP18577
C [auth L],
D [auth Q]
PharosQ02094
F [auth P]PharosP06028
PharosP02724
PharosP02730