8CVI | pdb_00008cvi

Cryo-EM structure of the supercoiled EPEC H6 flagellar filament core Curly I waveform

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Z [auth U]Flagellin_Ne8cviU1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
Y [auth K]Flagellin_Ne8cviK1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
X [auth d]Flagellin_Ne8cvid1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
W [auth T]Flagellin_Ne8cviT1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
V [auth J]Flagellin_Ne8cviJ1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
U [auth c]Flagellin_Ne8cvic1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
T [auth S]Flagellin_Ne8cviS1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
S [auth I]Flagellin_Ne8cviI1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
R [auth b]Flagellin_Ne8cvib1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
Q [auth R]Flagellin_Ne8cviR1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
P [auth H]Flagellin_Ne8cviH1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
O [auth a]Flagellin_Ne8cvia1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
N [auth Q]Flagellin_Ne8cviQ1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
M [auth G]Flagellin_Ne8cviG1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
L [auth Z]Flagellin_Ne8cviZ1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
K [auth P]Flagellin_Ne8cviP1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
J [auth F]Flagellin_Ne8cviF1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
I [auth Y]Flagellin_Ne8cviY1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
H [auth O]Flagellin_Ne8cviO1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
GA [auth g]Flagellin_Ne8cvig1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
G [auth E]Flagellin_Ne8cviE1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
FA [auth W]Flagellin_Ne8cviW1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
F [auth X]Flagellin_Ne8cviX1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
EA [auth M]Flagellin_Ne8cviM1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
E [auth N]Flagellin_Ne8cviN1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
DA [auth f]Flagellin_Ne8cvif1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
DFlagellin_Ne8cviD1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
CA [auth V]Flagellin_Ne8cviV1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
CFlagellin_Ne8cviC1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
BA [auth L]Flagellin_Ne8cviL1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
BFlagellin_Ne8cviB1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
AA [auth e]Flagellin_Ne8cvie1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)
AFlagellin_Ne8cviA1 A: alpha bundlesX: Four-helical up-and-down bundleH: alpha-helical domain in phase 1 flagellin (From Topology)T: alpha-helical domain in phase 1 flagellinF: Flagellin_NECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00700Bacterial flagellin C-terminal helical region (Flagellin_C)Bacterial flagellin C-terminal helical regionFlagellins polymerise to form bacterial flagella. There is some similarity between this entry and Pfam:PF00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate [2] and this is shown to be correct as structur ...Flagellins polymerise to form bacterial flagella. There is some similarity between this entry and Pfam:PF00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate [2] and this is shown to be correct as structurally this domain forms an extended helix that interacts with the N-terminal region (Pfam:PF00669) to form the D0 and D1 structural domains [3]. These domains are responsible for the activation of TLR5, with the C-terminal D0 region playing a key role [4-6].
Domain
PF00669Bacterial flagellin N-terminal helical region (Flagellin_N)Bacterial flagellin N-terminal helical region- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Flagellin -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR046358Flagellin, C-terminal domainDomain
IPR001029Flagellin, N-terminal domainDomain
IPR042187Flagellin, C-terminal domain, subdomain 2Homologous Superfamily
IPR001492FlagellinFamily
IPR032826Flagellin, H7-serospecific domainDomain