I [auth J] PF00338 Ribosomal protein S10p/S20e (Ribosomal_S10) Ribosomal protein S10p/S20e This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain H [auth I] PF00380 Ribosomal protein S9/S16 (Ribosomal_S9) Ribosomal protein S9/S16 - Family G [auth H] PF00410 Ribosomal protein S8 (Ribosomal_S8) Ribosomal protein S8 Domain F [auth G] PF00177 Ribosomal protein S7p/S5e (Ribosomal_S7) Ribosomal protein S7p/S5e This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain E [auth F] PF01250 Ribosomal protein S6 (Ribosomal_S6) Ribosomal protein S6 Domain WA [auth AZ] PF00830 Ribosomal L28 family (Ribosomal_L28) Ribosomal L28 family - Family VA [auth AY] PF01016 Ribosomal L27 protein (Ribosomal_L27) Ribosomal L27 protein - Family UA [auth AX] PF14693 Ribosomal protein TL5, C-terminal domain (Ribosomal_TL5_C) Ribosomal protein TL5, C-terminal domain This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC pr ... This family contains the C-terminal domain of ribosomal protein TL5. The N-terminal domain, which binds to 5S rRNA, is contained in family Ribosomal_L25p, Pfam:PF01386. Full length (N- and C-terminal domain) homologues of TL5 are also known as CTC proteins. TL5 or CTC are not found in Eukarya or Archaea. In some Bacteria, including E. coli, this ribosomal subunit occurs as a single domain protein (named Ribosomal subunit L25), where the only domain is homologous to TL5 N-terminal domain (hence included in family Pfam:PF01386). The function of the C-terminal domain of TLC is at present unknown. Less Domain UA [auth AX] PF01386 Ribosomal L25p family (Ribosomal_L25p) Ribosomal L25p family Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain TA [auth AW] PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24) Ribosomal proteins 50S L24/mitochondrial 39S L24 - Family TA [auth AW] PF00467 KOW motif (KOW) KOW motif - Family SA [auth AV] PF00276 Ribosomal protein L23 (Ribosomal_L23) Ribosomal protein L23 - Family RA [auth AU] PF00237 Ribosomal protein L22p/L17e (Ribosomal_L22) Ribosomal protein L22p/L17e This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain QA [auth AT] PF00829 Ribosomal prokaryotic L21 protein (Ribosomal_L21p) Ribosomal prokaryotic L21 protein - Family PA [auth AS] PF00453 Ribosomal protein L20 (Ribosomal_L20) Ribosomal protein L20 - Family OA [auth AR] PF01245 Ribosomal protein L19 (Ribosomal_L19) Ribosomal protein L19 - Family NA [auth AQ] PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p) Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast - Family D [auth E] PF03719 Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) Ribosomal protein S5, C-terminal domain Domain D [auth E] PF00333 Ribosomal protein S5, N-terminal domain (Ribosomal_S5) Ribosomal protein S5, N-terminal domain Domain MA [auth AP] PF01196 Ribosomal protein L17 (Ribosomal_L17) Ribosomal protein L17 - Family LA [auth AO] PF00252 Ribosomal protein L16p/L10e (Ribosomal_L16) Ribosomal protein L16p/L10e Domain KA [auth AN] PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain JA [auth AM] PF00238 Ribosomal protein L14p/L23e (Ribosomal_L14) Ribosomal protein L14p/L23e Domain IA [auth AL] PF00572 Ribosomal protein L13 (Ribosomal_L13) Ribosomal protein L13 - Family HA [auth AK] PF03946 Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) Ribosomal protein L11, N-terminal domain The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Domain HA [auth AK] PF00298 Ribosomal protein L11, RNA binding domain (Ribosomal_L11) Ribosomal protein L11, RNA binding domain Domain GA [auth AJ] PF00466 Ribosomal protein L10 (Ribosomal_L10) Ribosomal protein L10 - Family FA [auth AI] PF01281 Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) Ribosomal protein L9, N-terminal domain Domain FA [auth AI] PF03948 Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C) Ribosomal protein L9, C-terminal domain Domain EA [auth AH] PF00347 Ribosomal protein L6 (Ribosomal_L6) Ribosomal protein L6 Domain EA [auth AH] PF00444 Ribosomal protein L36 (Ribosomal_L36) Ribosomal protein L36 Domain DA [auth AG] PF00281 Ribosomal protein L5 (Ribosomal_L5) Ribosomal protein L5 Domain DA [auth AG] PF00673 ribosomal L5P family C-terminus (Ribosomal_L5_C) ribosomal L5P family C-terminus This region is found associated with Pfam:PF00281. Domain DA [auth AG] PF01632 Ribosomal protein L35 (Ribosomal_L35p) Ribosomal protein L35 - Family C [auth D] PF00163 Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) Ribosomal protein S4/S9 N-terminal domain - Family C [auth D] PF01479 S4 domain (S4) S4 domain The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA. Less Domain CA [auth AF] PF00468 Ribosomal protein L34 (Ribosomal_L34) Ribosomal protein L34 - Family CA [auth AF] PF00573 Ribosomal protein L4/L1 family (Ribosomal_L4) Ribosomal protein L4/L1 family - Family BA [auth AE] PF00471 Ribosomal protein L33 (Ribosomal_L33) Ribosomal protein L33 - Family BA [auth AE] PF00297 Ribosomal protein L3 (Ribosomal_L3) Ribosomal protein L3 - Family AA [auth AD] PF03947 Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) Ribosomal Proteins L2, C-terminal domain Domain AA [auth AD] PF00181 Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) Ribosomal Proteins L2, RNA binding N-terminal domain Domain AA [auth AD] PF01783 Ribosomal L32p protein family (Ribosomal_L32p) Ribosomal L32p protein family - Family Z [auth AC] PF00687 Ribosomal protein L1p/L10e family (Ribosomal_L1) Ribosomal protein L1p/L10e family This family includes prokaryotic L1 and eukaryotic L10. Domain V [auth W] PF02482 Sigma 54 modulation protein / S30EA ribosomal protein (Ribosomal_S30AE) Sigma 54 modulation protein / S30EA ribosomal protein - Family T [auth U] PF01165 Ribosomal protein S21 (Ribosomal_S21) Ribosomal protein S21 - Family B [auth C] PF07650 KH domain (KH_2) KH domain Domain B [auth C] PF00189 Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) Ribosomal protein S3, C-terminal domain This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain S [auth T] PF01649 Ribosomal protein S20 (Ribosomal_S20p) Ribosomal protein S20 - Family R [auth S] PF00203 Ribosomal protein S19 (Ribosomal_S19) Ribosomal protein S19 Domain Q [auth R] PF01084 Ribosomal protein S18 (Ribosomal_S18) Ribosomal protein S18 - Family P [auth Q] PF00366 Ribosomal protein S17 (Ribosomal_S17) Ribosomal protein S17 Domain O [auth P] PF00886 Ribosomal protein S16 (Ribosomal_S16) Ribosomal protein S16 - Family N [auth O] PF00312 Ribosomal protein S15 (Ribosomal_S15) Ribosomal protein S15 Domain M [auth N] PF00253 Ribosomal protein S14p/S29e (Ribosomal_S14) Ribosomal protein S14p/S29e - Family L [auth M] PF00416 Ribosomal protein S13/S18 (Ribosomal_S13) Ribosomal protein S13/S18 - Family K [auth L] PF00164 Ribosomal protein S12/S23 (Ribosom_S12_S23) Ribosomal protein S12/S23 This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain J [auth K] PF00411 Ribosomal protein S11 (Ribosomal_S11) Ribosomal protein S11 - Family