8FXR | pdb_00008fxr

Structure of neck with portal vertex of capsid of Agrobacterium phage Milano

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AG [auth AI], BG [auth AJ], CG [auth AK], DG [auth AL], SF [auth AA], AG [auth AI], BG [auth AJ], CG [auth AK], DG [auth AL], SF [auth AA], TF [auth AB], UF [auth AC], VF [auth AD], WF [auth AE], XF [auth AF], YF [auth AG], ZF [auth AH]	PF04860	Phage portal protein (Phage_portal)	Phage portal protein	-	Family
AC [auth e3], AD [auth 53], BC [auth f3], BD [auth 63], CC [auth g3], AC [auth e3], AD [auth 53], BC [auth f3], BD [auth 63], CC [auth g3], CD [auth 73], DC [auth h3], DD [auth 83], EC [auth i3], ED [auth 93], FB [auth J3], FC [auth j3], FD [auth 03], GB [auth K3], GC [auth k3], GD [auth A3], HB [auth L3], HC [auth l3], HD [auth B3], IB [auth M3], IC [auth m3], ID [auth C3], JB [auth N3], JC [auth n3], JD [auth D3], KB [auth O3], KC [auth o3], KD [auth E3], LB [auth P3], LC [auth p3], LD [auth F3], MB [auth Q3], MC [auth q3], MD [auth G3], NB [auth R3], NC [auth r3], OB [auth S3], OC [auth s3], PB [auth T3], PC [auth t3], QB [auth U3], QC [auth u3], RB [auth V3], RC [auth v3], SB [auth W3], SC [auth w3], TB [auth X3], TC [auth x3], UB [auth Y3], UC [auth y3], VB [auth Z3], VC [auth z3], WB [auth a3], WC [auth 13], XB [auth b3], XC [auth 23], YB [auth c3], YC [auth 33], ZB [auth d3], ZC [auth 43]	PF17963	Bacterial Ig domain (Big_9)	Bacterial Ig domain	This entry represents a wide variety of bacterial Ig domains.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
FG [auth AQ], HG [auth AR], LG [auth AS], NG [auth AT], QG [auth AW], FG [auth AQ], HG [auth AR], LG [auth AS], NG [auth AT], QG [auth AW], SG [auth AX]	Tail-terminator protein, gp18	-	-	-
AG [auth AI], BG [auth AJ], CG [auth AK], DG [auth AL], SF [auth AA], AG [auth AI], BG [auth AJ], CG [auth AK], DG [auth AL], SF [auth AA], TF [auth AB], UF [auth AC], VF [auth AD], WF [auth AE], XF [auth AF], YF [auth AG], ZF [auth AH]	Portal protein, gp7	-	-	viral capsid virion component
AC [auth e3], AD [auth 53], BC [auth f3], BD [auth 63], CC [auth g3], AC [auth e3], AD [auth 53], BC [auth f3], BD [auth 63], CC [auth g3], CD [auth 73], DC [auth h3], DD [auth 83], EC [auth i3], ED [auth 93], FB [auth J3], FC [auth j3], FD [auth 03], GB [auth K3], GC [auth k3], GD [auth A3], HB [auth L3], HC [auth l3], HD [auth B3], IB [auth M3], IC [auth m3], ID [auth C3], JB [auth N3], JC [auth n3], JD [auth D3], KB [auth O3], KC [auth o3], KD [auth E3], LB [auth P3], LC [auth p3], LD [auth F3], MB [auth Q3], MC [auth q3], MD [auth G3], NB [auth R3], NC [auth r3], OB [auth S3], OC [auth s3], PB [auth T3], PC [auth t3], QB [auth U3], QC [auth u3], RB [auth V3], RC [auth v3], SB [auth W3], SC [auth w3], TB [auth X3], TC [auth x3], UB [auth Y3], UC [auth y3], VB [auth Z3], VC [auth z3], WB [auth a3], WC [auth 13], XB [auth b3], XC [auth 23], YB [auth c3], YC [auth 33], ZB [auth d3], ZC [auth 43]	Collar sheath protein, gp13	-	-	-
AE [auth q5], BA [auth l1], BB [auth s2], CA [auth m1], CB [auth t2], AE [auth q5], BA [auth l1], BB [auth s2], CA [auth m1], CB [auth t2], CE [auth s5], DB [auth u2], DE [auth t5], EB [auth v2], EE [auth u5], FA [auth p1], FE [auth v5], GA [auth q1], HF [auth l7], IA [auth s1], IF [auth m7], JA [auth t1], KA [auth u1], LA [auth v1], LF [auth p7], MF [auth q7], OE [auth l6], OF [auth s7], PE [auth m6], PF [auth t7], QF [auth u7], RF [auth v7], SE [auth p6], TE [auth q6], UA [auth l2], VA [auth m2], VD [auth l5], VE [auth s6], WD [auth m5], WE [auth t6], XE [auth u6], YA [auth p2], YE [auth v6], ZA [auth q2], ZD [auth p5]	Minor capsid protein, gp10	-	-	-
AA [auth k1], AB [auth r2], BE [auth r5], DA [auth n1], EA [auth o1], AA [auth k1], AB [auth r2], BE [auth r5], DA [auth n1], EA [auth o1], EF [auth g7], FF [auth h7], GF [auth k7], HA [auth r1], JF [auth n7], KF [auth o7], LE [auth g6], ME [auth h6], NE [auth k6], NF [auth r7], QE [auth n6], RA [auth g2], RE [auth o6], SA [auth h2], SD [auth g5], TA [auth k2], TD [auth h5], UD [auth k5], UE [auth r6], WA [auth n2], XA [auth o2], XD [auth n5], Y [auth g1], YD [auth o5], Z [auth h1]	Major capsid protein, gp9	-	-	virion component
DF [auth f7], KE [auth f6], QA [auth f2], RD [auth f5], X [auth f1]	Linking protein 1, gp16	-	-	-
EG [auth AM], IG [auth AP], KG [auth AN], PG [auth AO], R [auth H], EG [auth AM], IG [auth AP], KG [auth AN], PG [auth AO], R [auth H], S [auth I]	Neck 2 protein, gp15	-	-	-
F [auth a], G [auth b], H [auth l], I [auth n], J [auth o], F [auth a], G [auth b], H [auth l], I [auth n], J [auth o], K [auth p], L [auth q], M [auth h], N [auth i], O [auth j], P [auth k], Q [auth m]	Neck 1 protein, gp14	-	-	-
GG [auth AU], JG [auth AZ], MG [auth AV], OG [auth Aa], RG [auth AY], GG [auth AU], JG [auth AZ], MG [auth AV], OG [auth Aa], RG [auth AY], TG [auth Ab]	Tail-tube, gp21	-	-	-
A [auth c], AF [auth b7], B [auth d], BF [auth d7], C [auth e], A [auth c], AF [auth b7], B [auth d], BF [auth d7], C [auth e], CF [auth e7], D [auth f], E [auth g], GE [auth a6], HE [auth b6], IE [auth d6], JE [auth e6], MA [auth a2], NA [auth b2], ND [auth a5], OA [auth d2], OD [auth b5], PA [auth e2], PD [auth d5], QD [auth e5], T [auth a1], U [auth b1], V [auth d1], W [auth e1], ZE [auth a7]	Linking protein 2, gp128	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AG [auth AI], BG [auth AJ], CG [auth AK], DG [auth AL], SF [auth AA], AG [auth AI], BG [auth AJ], CG [auth AK], DG [auth AL], SF [auth AA], TF [auth AB], UF [auth AC], VF [auth AD], WF [auth AE], XF [auth AF], YF [auth AG], ZF [auth AH]	IPR006944	Bacteriophage/Gene transfer agent portal protein	Family
AA [auth k1], AB [auth r2], BE [auth r5], DA [auth n1], EA [auth o1], AA [auth k1], AB [auth r2], BE [auth r5], DA [auth n1], EA [auth o1], EF [auth g7], FF [auth h7], GF [auth k7], HA [auth r1], JF [auth n7], KF [auth o7], LE [auth g6], ME [auth h6], NE [auth k6], NF [auth r7], QE [auth n6], RA [auth g2], RE [auth o6], SA [auth h2], SD [auth g5], TA [auth k2], TD [auth h5], UD [auth k5], UE [auth r6], WA [auth n2], XA [auth o2], XD [auth n5], Y [auth g1], YD [auth o5], Z [auth h1]	IPR054612	Phage capsid-like, C-terminal	Domain
AA [auth k1], AB [auth r2], BE [auth r5], DA [auth n1], EA [auth o1], AA [auth k1], AB [auth r2], BE [auth r5], DA [auth n1], EA [auth o1], EF [auth g7], FF [auth h7], GF [auth k7], HA [auth r1], JF [auth n7], KF [auth o7], LE [auth g6], ME [auth h6], NE [auth k6], NF [auth r7], QE [auth n6], RA [auth g2], RE [auth o6], SA [auth h2], SD [auth g5], TA [auth k2], TD [auth h5], UD [auth k5], UE [auth r6], WA [auth n2], XA [auth o2], XD [auth n5], Y [auth g1], YD [auth o5], Z [auth h1]	IPR024455	Phage capsid	Family
EG [auth AM], IG [auth AP], KG [auth AN], PG [auth AO], R [auth H], EG [auth AM], IG [auth AP], KG [auth AN], PG [auth AO], R [auth H], S [auth I]	IPR008767	Bacteriophage SPP1, head-tail adaptor	Family
EG [auth AM], IG [auth AP], KG [auth AN], PG [auth AO], R [auth H], EG [auth AM], IG [auth AP], KG [auth AN], PG [auth AO], R [auth H], S [auth I]	IPR038666	Bacteriophage SPP1, head-tail adaptor superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.