8FXX | pdb_00008fxx

Cryo-EM structure of cowpox virus M2 in complex with human B7.2 (heptameric ring)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	Immunoglobulin (Ig) domain-like	8054505	3000071	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Immunoglobulin (Ig) domain-like	8054505	3000071	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Immunoglobulin (Ig) domain-like	8054505	3000071	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Immunoglobulin (Ig) domain-like	8054505	3000071	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Immunoglobulin (Ig) domain-like	8054505	3000071	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Immunoglobulin (Ig) domain-like	8054505	3000071	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Immunoglobulin (Ig) domain-like	8054505	3000071	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, D, F, I A, B, D, F, I, K, M	PF04887	Poxvirus M2 protein (Pox_M2)	Poxvirus M2 protein	-	Family
C, E, G, H, J C, E, G, H, J, L, N	PF07686	Immunoglobulin V-set domain (V-set)	Immunoglobulin V-set domain	This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, D, F, I A, B, D, F, I, K, M	CPXV040 protein	-	symbiont-mediated suppression of host signal transduction pathway symbiont-mediated perturbation of host NF-kappaB cascade symbiont-mediated perturbation of host cellular process biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host process symbiont-mediated perturbation of host signal transduction pathway symbiont-mediated suppression of host NF-kappaB cascade modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction	cellular anatomical structure extracellular region host intracellular membrane-bounded organelle host cellular component host intracellular part host cell endoplasmic reticulum other organism part host cell cytoplasm part host intracellular organelle host cell cytoplasm host cell part host intracellular region
C, E, G, H, J C, E, G, H, J, L, N	T-lymphocyte activation antigen CD86	protein binding binding virus receptor activity exogenous protein binding molecular transducer activity signaling receptor activity coreceptor activity molecular function activator activity signaling receptor binding molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity	response to stimulus immune response immune system process adaptive immune response multicellular organismal process B cell activation cell activation cellular process lymphocyte activation leukocyte activation cellular response to stimulus biological process involved in interspecies interaction between organisms response to lipid response to other organism response to stimulus immune response immune system process adaptive immune response multicellular organismal process B cell activation cell activation cellular process lymphocyte activation leukocyte activation cellular response to stimulus biological process involved in interspecies interaction between organisms response to lipid response to other organism cellular response to lipopolysaccharide response to oxygen-containing compound response to external stimulus cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound response to biotic stimulus cellular response to biotic stimulus cellular response to chemical stimulus response to chemical response to bacterium cellular response to lipid response to external biotic stimulus response to molecule of bacterial origin negative regulation of lymphocyte proliferation regulation of cellular process regulation of leukocyte activation negative regulation of biological process regulation of cell activation negative regulation of T cell proliferation negative regulation of cell adhesion negative regulation of leukocyte proliferation T cell activation lymphocyte proliferation regulation of immune system process regulation of leukocyte proliferation regulation of biological process cell population proliferation negative regulation of T cell activation negative regulation of leukocyte cell-cell adhesion regulation of cell population proliferation mononuclear cell proliferation negative regulation of cell-cell adhesion regulation of leukocyte cell-cell adhesion negative regulation of multicellular organismal process negative regulation of leukocyte activation negative regulation of lymphocyte activation leukocyte proliferation leukocyte cell-cell adhesion negative regulation of mononuclear cell proliferation cell adhesion cell-cell adhesion negative regulation of cellular process regulation of multicellular organismal process regulation of cell-cell adhesion T cell proliferation regulation of lymphocyte proliferation negative regulation of cell population proliferation regulation of cell adhesion biological regulation regulation of T cell activation negative regulation of cell activation regulation of T cell proliferation negative regulation of immune system process regulation of mononuclear cell proliferation regulation of lymphocyte activation regulation of alpha-beta T cell activation positive regulation of T cell differentiation alpha-beta T cell differentiation involved in immune response regulation of cell development multicellular organism development type 2 immune response positive regulation of immune response cell differentiation regulation of type 2 immune response regulation of T-helper cell differentiation alpha-beta T cell activation positive regulation of CD4-positive, alpha-beta T cell differentiation T-helper cell differentiation positive regulation of cell development immune effector process regulation of response to stimulus positive regulation of alpha-beta T cell differentiation regulation of developmental process cell development positive regulation of leukocyte cell-cell adhesion CD4-positive, alpha-beta T cell differentiation positive regulation of T-helper cell differentiation positive regulation of cell-cell adhesion regulation of T cell differentiation positive regulation of lymphocyte activation alpha-beta T cell differentiation T cell activation involved in immune response positive regulation of cell differentiation leukocyte activation involved in immune response regulation of T-helper 2 cell differentiation positive regulation of immune effector process positive regulation of cellular process hemopoiesis positive regulation of T-helper 2 cell differentiation regulation of CD4-positive, alpha-beta T cell activation regulation of immune effector process regulation of leukocyte differentiation mononuclear cell differentiation regulation of cell differentiation lymphocyte differentiation cell activation involved in immune response CD4-positive, alpha-beta T cell differentiation involved in immune response positive regulation of developmental process positive regulation of cell activation anatomical structure development positive regulation of leukocyte activation T cell differentiation positive regulation of immune system process developmental process positive regulation of T cell activation positive regulation of alpha-beta T cell activation regulation of immune response positive regulation of multicellular organismal process leukocyte differentiation cellular developmental process positive regulation of biological process regulation of CD4-positive, alpha-beta T cell differentiation regulation of alpha-beta T cell differentiation positive regulation of response to stimulus positive regulation of CD4-positive, alpha-beta T cell activation alpha-beta T cell activation involved in immune response positive regulation of hemopoiesis CD4-positive, alpha-beta T cell activation T-helper 2 cell differentiation lymphocyte activation involved in immune response regulation of lymphocyte differentiation regulation of multicellular organismal development positive regulation of cell adhesion T cell differentiation involved in immune response positive regulation of type 2 immune response regulation of hemopoiesis positive regulation of leukocyte differentiation positive regulation of lymphocyte differentiation positive regulation of cell population proliferation cell surface receptor signaling pathway signaling signal transduction cell communication immunoglobulin production positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of immunoglobulin production regulation of biosynthetic process production of molecular mediator of immune response regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process regulation of immunoglobulin production positive regulation of gene expression positive regulation of production of molecular mediator of immune response regulation of macromolecule biosynthetic process metabolic process regulation of production of molecular mediator of immune response macromolecule metabolic process regulation of metabolic process regulation of cytokine production cytokine production regulation of interleukin-2 production interleukin-2 production positive regulation of interleukin-2 production positive regulation of cytokine production positive regulation of protein metabolic process regulation of primary metabolic process positive regulation of tumor necrosis factor superfamily cytokine production protein metabolic process regulation of lymphotoxin A production lymphotoxin A production regulation of protein metabolic process tumor necrosis factor superfamily cytokine production primary metabolic process positive regulation of lymphotoxin A production regulation of tumor necrosis factor superfamily cytokine production positive regulation of DNA-templated transcription RNA metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process positive regulation of nucleobase-containing compound metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription positive regulation of cell communication positive regulation of signal transduction regulation of signal transduction regulation of non-canonical NF-kappaB signal transduction intracellular signal transduction regulation of intracellular signal transduction intracellular signaling cassette regulation of signaling non-canonical NF-kappaB signal transduction positive regulation of intracellular signal transduction regulation of cell communication positive regulation of non-canonical NF-kappaB signal transduction positive regulation of signaling lymphocyte costimulation T cell costimulation regulation of interleukin-4 production positive regulation of interleukin-4 production interleukin-4 production positive regulation of lymphocyte proliferation positive regulation of T cell proliferation positive regulation of leukocyte proliferation positive regulation of mononuclear cell proliferation	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure intracellular membraneless organelle intracellular organelle centrosome microtubule organizing center cytoskeleton centriolar satellite membraneless organelle microtubule cytoskeleton

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, D, F, I A, B, D, F, I, K, M	IPR006971	Poxvirus M2	Family
C, E, G, H, J C, E, G, H, J, L, N	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
C, E, G, H, J C, E, G, H, J, L, N	IPR013106	Immunoglobulin V-set domain	Domain
C, E, G, H, J C, E, G, H, J, L, N	IPR003599	Immunoglobulin domain subtype	Domain
C, E, G, H, J C, E, G, H, J, L, N	IPR051713	T-cell Activation and Immune Regulation Protein	Family
C, E, G, H, J C, E, G, H, J, L, N	IPR037677	CD86, IgV domain	Domain
C, E, G, H, J C, E, G, H, J, L, N	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
C, E, G, H, J C, E, G, H, J, L, N	IPR007110	Immunoglobulin-like domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C, E, G, H, J C, E, G, H, J, L, N	Pharos: P42081	plasma cell myeloma liver disease Liver Cirrhosis, Experimental contact dermatitis invasive ductal breast carcinoma lung carcinoma malignant glioma arthritic joint disease myeloid neoplasm cancer pilocytic astrocytoma psoriasis Sjogren syndrome diffuse large B-cell lymphoma ulcerative colitis plasma cell myeloma liver disease Liver Cirrhosis, Experimental contact dermatitis invasive ductal breast carcinoma lung carcinoma malignant glioma arthritic joint disease myeloid neoplasm cancer pilocytic astrocytoma psoriasis Sjogren syndrome diffuse large B-cell lymphoma ulcerative colitis follicular lymphoma glioblastoma hematologic disease juvenile idiopathic arthritis lung disease malignant mesothelioma autoimmune disease non-small cell lung carcinoma chronic obstructive pulmonary disease cutaneous lupus erythematosus skin disease digestive system neuroendocrine neoplasm X-linked mixed deafness with perilymphatic gusher gastric cancer Hashimoto thyroiditis interstitial cystitis lung cancer lymphatic system disease medulloblastoma breast cancer pancreatic intraductal papillary-mucinous carcinoma plasma cell neoplasm rheumatoid arthritis cystic fibrosis subependymal giant cell astrocytoma gastric carcinoma head and neck cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.