8FZD | pdb_00008fzd

Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth i]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082661 3000100 SCOP2B (2022-06-29)
H [auth h]SCOP2B SuperfamilyRibosomal protein S8 8079059 3000709 SCOP2B (2022-06-29)
G [auth g]SCOP2B SuperfamilyRibosomal protein S7 8077979 3000799 SCOP2B (2022-06-29)
F [auth f]SCOP2B SuperfamilyRibosomal protein S6 8066495 3001323 SCOP2B (2022-06-29)
GB [auth 8]SCOP2B SuperfamilyRibosomal protein L36 8035391 3001346 SCOP2B (2022-06-29)
FB [auth 7]SCOP2B SuperfamilyL35p-like 8035388 3000790 SCOP2B (2022-06-29)
DB [auth 5]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096362 3001320 SCOP2B (2022-06-29)
CB [auth 4]SCOP2B SuperfamilyZn-binding ribosomal proteins 8096380 3001320 SCOP2B (2022-06-29)
BB [auth 3]SCOP2B SuperfamilyL28p-like 8032740 3001966 SCOP2B (2022-06-29)
AB [auth 2]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8096372 3001378 SCOP2B (2022-06-29)
ZA [auth 1]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8096370 3000713 SCOP2B (2022-06-29)
YA [auth Z]SCOP2B SuperfamilyL28p-like 8035424 3001966 SCOP2B (2022-06-29)
XA [auth Y]SCOP2B SuperfamilyRibosomal L27 protein-like 8096338 3000539 SCOP2B (2022-06-29)
WA [auth X]SCOP2B SuperfamilyRibosomal protein L25-like 8042538 3001161 SCOP2B (2022-06-29)
VA [auth W]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096358 3000334 SCOP2B (2022-06-29)
UA [auth V]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8035415 3000210 SCOP2B (2022-06-29)
TA [auth U]SCOP2B SuperfamilyRibosomal protein L22 8096336 3001078 SCOP2B (2022-06-29)
SA [auth T]SCOP2B Superfamilyl21p-like 8096354 3002005 SCOP2B (2022-06-29)
RA [auth S]SCOP2B SuperfamilyRibosomal protein L20 8096382 3000563 SCOP2B (2022-06-29)
QA [auth R]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8096364 3000334 SCOP2B (2022-06-29)
PA [auth Q]SCOP2B SuperfamilyTranslational machinery components 8032969 3000571 SCOP2B (2022-06-29)
OA [auth P]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8035409 3000995 SCOP2B (2022-06-29)
NA [auth O]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8096366 3000884 SCOP2B (2022-06-29)
D [auth d]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8083400 3001473 SCOP2B (2022-06-29)
MA [auth N]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8070553 3001045 SCOP2B (2022-06-29)
LA [auth M]SCOP2B Superfamily50S Ribosomal protein L14-like 8103358 3000433 SCOP2B (2022-06-29)
KA [auth L]SCOP2B SuperfamilyRibosomal protein L13 8096350 3001134 SCOP2B (2022-06-29)
JA [auth J]SCOP2B SuperfamilyRibosomal protein L11, C-terminal domain 8032961 3001186 SCOP2B (2022-06-29)
JA [auth J]SCOP2B SuperfamilyRibosomal L11/L12e N-terminal domain-like 8032963 3000950 SCOP2B (2022-06-29)
IA [auth I]SCOP2B SuperfamilyRibosomal protein L10-like 8079773 3000665 SCOP2B (2022-06-29)
GA [auth G]SCOP2B SuperfamilyRibosomal protein L6 8035398 3000724 SCOP2B (2022-06-29)
GA [auth G]SCOP2B SuperfamilyRibosomal protein L6 8035397 3000724 SCOP2B (2022-06-29)
FA [auth F]SCOP2B SuperfamilyRL5-like 8096352 3001709 SCOP2B (2022-06-29)
EA [auth E]SCOP2B SuperfamilyRibosomal protein L4 8096356 3001146 SCOP2B (2022-06-29)
DA [auth D]SCOP2B SuperfamilyTranslational proteins 8032955 3000811 SCOP2B (2022-06-29)
CA [auth C]SCOP2B SuperfamilyNucleic acid-binding proteins 8035394 3000135 SCOP2B (2022-06-29)
CA [auth C]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8035393 3000334 SCOP2B (2022-06-29)
Z [auth v]SCOP2B SuperfamilyEF-G C-terminal domain-like 8092475 3001287 SCOP2B (2022-06-29)
Z [auth v]SCOP2B SuperfamilyRas-like P-loop GTPases 8092476 3002022 SCOP2B (2022-06-29)
Z [auth v]SCOP2B SuperfamilyEF-Tu post-G domain-like 8092477 3002024 SCOP2B (2022-06-29)
Z [auth v]SCOP2B SuperfamilyEF-G C-terminal domain-like 8092474 3001287 SCOP2B (2022-06-29)
Y [auth w]SCOP2B SuperfamilyRelease factor N-terminal domain-like 8032779 3001827 SCOP2B (2022-06-29)
Y [auth w]SCOP2B SuperfamilyPeptidyl-tRNA hydrolase domain-like 8054407 3001421 SCOP2B (2022-06-29)
Y [auth w]SCOP2B SuperfamilyRNA-binding domain, RBD 8054405 3000110 SCOP2B (2022-06-29)
U [auth u]SCOP2B SuperfamilyRibosomal protein S21 8053090 3002159 SCOP2B (2022-06-29)
B [auth b]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8063838 3001397 SCOP2B (2022-06-29)
S [auth s]SCOP2B SuperfamilyRibosomal protein S19 8103915 3000686 SCOP2B (2022-06-29)
Q [auth q]SCOP2B SuperfamilyNucleic acid-binding proteins 8059276 3000135 SCOP2B (2022-06-29)
P [auth p]SCOP2B SuperfamilyRibosomal protein S16 8106547 3000680 SCOP2B (2022-06-29)
O [auth o]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8032375 3001284 SCOP2B (2022-06-29)
N [auth n]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052568 3000068 SCOP2B (2022-06-29)
M [auth m]SCOP2B SuperfamilyS13-like H2TH domain 8098358 3000053 SCOP2B (2022-06-29)
L [auth l]SCOP2B SuperfamilyNucleic acid-binding proteins 8106545 3000135 SCOP2B (2022-06-29)
K [auth k]SCOP2B SuperfamilyTranslational machinery components 8035368 3000571 SCOP2B (2022-06-29)
J [auth j]SCOP2B SuperfamilyRibosomal protein S10 8102681 3001336 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
GB [auth 8]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36Domain
FB [auth 7]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
EB [auth 6]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
DB [auth 5]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
CB [auth 4]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
BB [auth 3]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
AB [auth 2]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
ZA [auth 1]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
YA [auth Z]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
WA [auth X]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. Domain
VA [auth W]PF03462PCRF domain (PCRF)PCRF domainThis domain is found in peptide chain release factors. Domain
VA [auth W]PF17136Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24)Large ribosomal subunit protein uL24, C-terminal domainThis entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ...This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 makes very minor contributions to the biogenesis structure, and function of 60s ribosomal subunits [1]. However, RPL24 is essential to generate the first intermediate during 50s ribosomal subunits assembly [2]. RPL26 have an extra-ribosomal function to enhances p53 translation after DNA damage [3].
Domain
VA [auth W]PF00467KOW motif (KOW)KOW motif- Family
UA [auth V]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Domain
UA [auth V]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
TA [auth U]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
TA [auth U]PF01165Ribosomal protein S21 (Ribosomal_S21)Ribosomal protein S21- Family
SA [auth T]PF01649Ribosomal protein S20 (Ribosomal_S20p)Ribosomal protein S20- Family
SA [auth T]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
RA [auth S]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
RA [auth S]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
QA [auth R]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
PA [auth Q]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
OA [auth P]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
OA [auth P]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
NA [auth O]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
NA [auth O]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
MA [auth N]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
MA [auth N]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
LA [auth M]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
LA [auth M]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
KA [auth L]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
KA [auth L]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
JA [auth J]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Domain
JA [auth J]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
JA [auth J]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domainDomain
IA [auth I]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
IA [auth I]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
HA [auth H]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domainDomain
HA [auth H]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
GA [auth G]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
FA [auth F]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
FA [auth F]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain
FA [auth F]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
EA [auth E]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
EA [auth E]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
EA [auth E]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
DA [auth D]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
DA [auth D]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
DA [auth D]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
CA [auth C]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
CA [auth C]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
CA [auth C]PF07650KH domain (KH_2)KH domainDomain
CA [auth C]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
BA [auth B]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth i]30S ribosomal protein S9
H [auth h]30S ribosomal protein S8
G [auth g]30S ribosomal protein S7
F [auth f]30S ribosomal protein S6
GB [auth 8]50S ribosomal protein L36
FB [auth 7]50S ribosomal protein L35
EB [auth 6]50S ribosomal protein L34
DB [auth 5]50S ribosomal protein L33
CB [auth 4]50S ribosomal protein L32
BB [auth 3]50S ribosomal protein L31
AB [auth 2]50S ribosomal protein L30
ZA [auth 1]50S ribosomal protein L29
YA [auth Z]50S ribosomal protein L28
XA [auth Y]50S ribosomal protein L27
E [auth e]30S ribosomal protein S5
WA [auth X]50S ribosomal protein L25
VA [auth W]50S ribosomal protein L24
UA [auth V]50S ribosomal protein L23
TA [auth U]50S ribosomal protein L22
SA [auth T]Ribosomal protein L21
RA [auth S]50S ribosomal protein L20
QA [auth R]50S ribosomal protein L19
PA [auth Q]50S ribosomal protein L18
OA [auth P]50S ribosomal protein L17
NA [auth O]50S ribosomal protein L16
D [auth d]30S ribosomal protein S4
MA [auth N]50S ribosomal protein L15
LA [auth M]50S ribosomal protein L14
KA [auth L]50S ribosomal protein L13
JA [auth J]50S ribosomal protein L11
IA [auth I]50S ribosomal protein L10
HA [auth H]50S ribosomal protein L9
GA [auth G]50S ribosomal protein L6
FA [auth F]50S ribosomal protein L5
EA [auth E]50S ribosomal protein L4
DA [auth D]50S ribosomal protein L3
C [auth c]30S ribosomal protein S3
CA [auth C]50S ribosomal protein L2
BA [auth B]5S Ribosomal RNA---
AA [auth A]23S Ribosomal RNA---
Z [auth v]Peptide chain release factor RF3
Y [auth w]Peptide chain release factor 1
X [auth z]F-UAA mRNA---
W [auth y]P-site phenylalanyl-tRNA---
V [auth x]P-site phenylalanyl-tRNA---
U [auth u]30S ribosomal protein S21
T [auth t]30S ribosomal protein S20
B [auth b]30S ribosomal protein S2
S [auth s]30S ribosomal protein S19
R [auth r]30S ribosomal protein S18
Q [auth q]30S ribosomal protein S17
P [auth p]30S ribosomal protein S16
O [auth o]30S ribosomal protein S15
N [auth n]30S ribosomal protein S14
M [auth m]30S ribosomal protein S13
L [auth l]30S ribosomal protein S12
K [auth k]30S ribosomal protein S11
J [auth j]30S ribosomal protein S10
A [auth a]16S Ribosomal RNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth i]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
I [auth i]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
I [auth i]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
I [auth i]IPR000754Small ribosomal subunit protein uS9Family
I [auth i]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
H [auth h]IPR000630Small ribosomal subunit protein uS8Family
H [auth h]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
H [auth h]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
G [auth g]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
G [auth g]IPR005717Small ribosomal subunit protein uS7, bacteria/organellaFamily
G [auth g]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
G [auth g]IPR000235Small ribosomal subunit protein uS7Family
G [auth g]IPR023798Small ribosomal subunit protein uS7 domainDomain
F [auth f]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
F [auth f]IPR000529Small ribosomal subunit protein bS6Family
F [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
F [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
F [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
GB [auth 8]IPR000473Large ribosomal subunit protein bL36Family
GB [auth 8]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
FB [auth 7]IPR021137Large ribosomal subunit protein bL35-likeFamily
FB [auth 7]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
FB [auth 7]IPR001706Large ribosomal subunit protein bL35Family
FB [auth 7]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
EB [auth 6]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
EB [auth 6]IPR000271Large ribosomal subunit protein bL34Family
DB [auth 5]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
DB [auth 5]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
DB [auth 5]IPR001705Large ribosomal subunit protein bL33Family
DB [auth 5]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
CB [auth 4]IPR002677Large ribosomal subunit protein bL32Family
CB [auth 4]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
CB [auth 4]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
BB [auth 3]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
BB [auth 3]IPR027491Large ribosomal subunit protein bL31 type AFamily
BB [auth 3]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
BB [auth 3]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
AB [auth 2]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
AB [auth 2]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
AB [auth 2]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
AB [auth 2]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
ZA [auth 1]IPR050063Universal ribosomal protein uL29Family
ZA [auth 1]IPR001854Large ribosomal subunit protein uL29Family
ZA [auth 1]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
ZA [auth 1]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
YA [auth Z]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
YA [auth Z]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
YA [auth Z]IPR026569Large ribosomal subunit protein bL28Family
YA [auth Z]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
XA [auth Y]IPR001684Large ribosomal subunit protein bL27Family
XA [auth Y]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
E [auth e]IPR000851Small ribosomal subunit protein uS5Family
E [auth e]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
E [auth e]IPR005712Small ribosomal subunit protein uS5, bacteriaFamily
E [auth e]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
E [auth e]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
E [auth e]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
E [auth e]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
WA [auth X]IPR020055Ribosomal protein bL25, short-formFamily
WA [auth X]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
WA [auth X]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
WA [auth X]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
WA [auth X]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
VA [auth W]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
VA [auth W]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
VA [auth W]IPR003256Large ribosomal subunit protein uL24Family
VA [auth W]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
VA [auth W]IPR005824KOWDomain
VA [auth W]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
UA [auth V]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
UA [auth V]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
UA [auth V]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
UA [auth V]IPR013025Large ribosomal subunit protein uL23-likeFamily
TA [auth U]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
TA [auth U]IPR001063Large ribosomal subunit protein uL22Family
TA [auth U]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily
TA [auth U]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
TA [auth U]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
SA [auth T]IPR028909Large ribosomal subunit protein bL21-likeFamily
SA [auth T]IPR001787Large ribosomal subunit protein bL21Family
SA [auth T]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
SA [auth T]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
RA [auth S]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
RA [auth S]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
RA [auth S]IPR005813Large ribosomal subunit protein bL20Family
QA [auth R]IPR001857Large ribosomal subunit protein bL19Family
QA [auth R]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
QA [auth R]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
QA [auth R]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
PA [auth Q]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
PA [auth Q]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
OA [auth P]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
OA [auth P]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
OA [auth P]IPR000456Large ribosomal subunit protein bL17Family
NA [auth O]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
NA [auth O]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
NA [auth O]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
NA [auth O]IPR016180Large ribosomal subunit protein uL16 domainDomain
NA [auth O]IPR047873Large ribosomal subunit protein uL16Family
D [auth d]IPR002942RNA-binding S4 domainDomain
D [auth d]IPR022801Small ribosomal subunit protein uS4Family
D [auth d]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
D [auth d]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
D [auth d]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
D [auth d]IPR005709Small ribosomal subunit protein uS4, bacteriaFamily
MA [auth N]IPR021131Large ribosomal subunit protein uL15/eL18Domain
MA [auth N]IPR030878Large ribosomal subunit protein uL15Family
MA [auth N]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
MA [auth N]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
MA [auth N]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
LA [auth M]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
LA [auth M]IPR000218Large ribosomal subunit protein uL14Family
LA [auth M]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
LA [auth M]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
KA [auth L]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
KA [auth L]IPR005822Large ribosomal subunit protein uL13Family
KA [auth L]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
KA [auth L]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
JA [auth J]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
JA [auth J]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
JA [auth J]IPR000911Ribosomal protein uL11Family
JA [auth J]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
JA [auth J]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
JA [auth J]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
JA [auth J]IPR006519Large ribosomal subunit protein uL11, bacteriaFamily
IA [auth I]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
IA [auth I]IPR001790Large ribosomal subunit protein uL10Family
IA [auth I]IPR047865Large ribosomal subunit protein uL10, bacteria/organellaFamily
IA [auth I]IPR002363Large ribosomal subunit protein uL10, conserved site, bacteriaConserved Site
IA [auth I]IPR022973Large ribosomal subunit protein uL10, bacteriaFamily
HA [auth H]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
HA [auth H]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
HA [auth H]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
HA [auth H]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
HA [auth H]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
HA [auth H]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
HA [auth H]IPR000244Large ribosomal subunit protein bL9Family
GA [auth G]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
GA [auth G]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
GA [auth G]IPR000702Large ribosomal subunit protein uL6-likeFamily
GA [auth G]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
GA [auth G]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
FA [auth F]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
FA [auth F]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
FA [auth F]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
FA [auth F]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
FA [auth F]IPR002132Large ribosomal subunit protein uL5Family
FA [auth F]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
EA [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
EA [auth E]IPR002136Large ribosomal subunit protein uL4Family
EA [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
DA [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
DA [auth D]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
DA [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
DA [auth D]IPR000597Large ribosomal subunit protein uL3Family
C [auth c]IPR005704Small ribosomal subunit protein uS3, bacteriaFamily
C [auth c]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
C [auth c]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
C [auth c]IPR004087K Homology domainDomain
C [auth c]IPR004044K Homology domain, type 2Domain
C [auth c]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
C [auth c]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
C [auth c]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
CA [auth C]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
CA [auth C]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
CA [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
CA [auth C]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CA [auth C]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
CA [auth C]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
CA [auth C]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
CA [auth C]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
CA [auth C]IPR002171Large ribosomal subunit protein uL2Family
Z [auth v]IPR005225Small GTP-binding domainDomain
Z [auth v]IPR032090Peptide chain release factor 3, C-terminalDomain
Z [auth v]IPR000795Translational (tr)-type GTP-binding domainDomain
Z [auth v]IPR041732Peptide chain release factor 3, GTP-binding domainDomain
Z [auth v]IPR031157Tr-type G domain, conserved siteConserved Site
Z [auth v]IPR035647EF-G domain III/V-likeHomologous Superfamily
Z [auth v]IPR053905Elongation factor G-like, domain IIDomain
Z [auth v]IPR004548Peptide chain release factor 3Family
Z [auth v]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
Z [auth v]IPR038467Peptide chain release factor 3, domain III superfamilyHomologous Superfamily
Z [auth v]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
Y [auth w]IPR050057Prokaryotic/Mitochondrial Release FactorFamily
Y [auth w]IPR004373Peptide chain release factor 1Family
Y [auth w]IPR000352Peptide chain release factor class IDomain
Y [auth w]IPR045853Peptide chain release factor class I superfamilyHomologous Superfamily
Y [auth w]IPR005139Peptide chain release factorDomain
U [auth u]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
U [auth u]IPR018278Small ribosomal subunit protein bS21, conserved siteConserved Site
U [auth u]IPR001911Small ribosomal subunit protein bS21Family
T [auth t]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
T [auth t]IPR002583Small ribosomal subunit protein bS20Family
B [auth b]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
B [auth b]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth b]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth b]IPR001865Small ribosomal subunit protein uS2Family
S [auth s]IPR005732Small ribosomal subunit protein uS19, bacteriaFamily
S [auth s]IPR002222Small ribosomal subunit protein uS19Family
S [auth s]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
S [auth s]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
R [auth r]IPR001648Small ribosomal subunit protein bS18Family
R [auth r]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
R [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
Q [auth q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
Q [auth q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
Q [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
Q [auth q]IPR000266Small ribosomal subunit protein uS17Family
P [auth p]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
P [auth p]IPR000307Small ribosomal subunit protein bS16Family
P [auth p]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
O [auth o]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
O [auth o]IPR000589Small ribosomal subunit protein uS15Family
O [auth o]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
N [auth n]IPR001209Small ribosomal subunit protein uS14Family
N [auth n]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
N [auth n]IPR023036Small ribosomal subunit protein uS14, bacteria/plastidFamily
M [auth m]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
M [auth m]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
M [auth m]IPR001892Small ribosomal subunit protein uS13Family
M [auth m]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
M [auth m]IPR019980Small ribosomal subunit protein uS13, bacteriaFamily
L [auth l]IPR005679Ribosomal protein uS12, bacteriaFamily
L [auth l]IPR006032Small ribosomal subunit protein uS12Family
L [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
K [auth k]IPR001971Small ribosomal subunit protein uS11Family
K [auth k]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
K [auth k]IPR019981Small ribosomal subunit protein uS11, bacteriaFamily
K [auth k]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
J [auth j]IPR027486Small ribosomal subunit protein uS10 domainDomain
J [auth j]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
J [auth j]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
J [auth j]IPR001848Small ribosomal subunit protein uS10Family

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
NA [auth O]4D4 Parent Component: ARG

NA [auth O]MS6
DA [auth D]MEQ Parent Component: GLN

RESIDAA0071

PSI-MOD :  N5-methyl-L-glutamine MOD:00080
AA [auth A]1MG Parent Component: G

RESIDAA0071

AA [auth A]2MA Parent Component: A

RESIDAA0071

AA [auth A]2MG Parent Component: G

RESIDAA0071

AA [auth A]3TD Parent Component: U

RESIDAA0071

AA [auth A]5MC Parent Component: C

RESIDAA0071

AA [auth A]5MU Parent Component: U

RESIDAA0071

AA [auth A]6MZ Parent Component: A

RESIDAA0071

AA [auth A]G7M Parent Component: G

RESIDAA0071

AA [auth A]H2U Parent Component: U

RESIDAA0071

AA [auth A]OMC Parent Component: C

RESIDAA0071

AA [auth A]OMG Parent Component: G

RESIDAA0071

AA [auth A]OMU Parent Component: U

RESIDAA0071

AA [auth A]PSU Parent Component: U

RESIDAA0071

W [auth y]4SU Parent Component: U

RESIDAA0071

W [auth y]5MU Parent Component: U

RESIDAA0071

W [auth y]AMP RESIDAA0071 , AA0203 , AA0227 , AA0371 , AA0511

PSI-MOD :  N5-methyl-L-glutamine MOD:00080 , O4'-(phospho-5'-adenosine)-L-tyrosine MOD:00208 , N6-(phospho-5'-adenosine)-L-lysine MOD:00232 , 1'-(phospho-5'-adenosine)-L-histidine MOD:00376 , glycyl phospho-5'-adenosine MOD:01614
W [auth y]G7M Parent Component: G

RESIDAA0071 , AA0203 , AA0227 , AA0371 , AA0511

W [auth y]PSU Parent Component: U

RESIDAA0071 , AA0203 , AA0227 , AA0371 , AA0511

V [auth x]4SU Parent Component: U

RESIDAA0071 , AA0203 , AA0227 , AA0371 , AA0511

V [auth x]5MU Parent Component: U

RESIDAA0071 , AA0203 , AA0227 , AA0371 , AA0511

V [auth x]G7M Parent Component: G

RESIDAA0071 , AA0203 , AA0227 , AA0371 , AA0511

V [auth x]MIA Parent Component: A

RESIDAA0071 , AA0203 , AA0227 , AA0371 , AA0511

V [auth x]PSU Parent Component: U

RESIDAA0071 , AA0203 , AA0227 , AA0371 , AA0511

L [auth l]D2T Parent Component: ASP

RESIDAA0071 , AA0203 , AA0227 , AA0371 , AA0511

K [auth k]IAS RESIDAA0071 , AA0203 , AA0227 , AA0371 , AA0511

A [auth a]2MG Parent Component: G

RESIDAA0071 , AA0203 , AA0227 , AA0371 , AA0511

A [auth a]4OC Parent Component: C

RESIDAA0071 , AA0203 , AA0227 , AA0371 , AA0511

A [auth a]5MC Parent Component: C

RESIDAA0071 , AA0203 , AA0227 , AA0371 , AA0511

A [auth a]G7M Parent Component: G

RESIDAA0071 , AA0203 , AA0227 , AA0371 , AA0511

A [auth a]MA6 Parent Component: A

RESIDAA0071 , AA0203 , AA0227 , AA0371 , AA0511

A [auth a]PSU Parent Component: U

RESIDAA0071 , AA0203 , AA0227 , AA0371 , AA0511

A [auth a]UR3 Parent Component: U

RESIDAA0071 , AA0203 , AA0227 , AA0371 , AA0511