8KD2 | pdb_00008kd2

Rpd3S in complex with 187bp nucleosome


Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.800.20 Alpha Beta 3-Layer(aba) Sandwich Arginase Chain ACATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Histone deacetylase RPD3
P [auth Y]187bp DNA---
Transcriptional regulatory protein SIN3
C [auth D],
E [auth F]
Chromatin modification-related protein EAF3
D [auth E],
F [auth G]
Transcriptional regulatory protein RCO1
G [auth O],
K [auth S]
Histone H3 -
H [auth P],
L [auth T]
Histone H4
I [auth Q],
M [auth U]
Histone H2A
J [auth R],
N [auth V]
Histone H2B 1.1 -
O [auth X]187bp DNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR023801Histone deacetylase domainDomain
IPR000286Histone deacetylase HDACFamily
IPR050284HDAC_PDACUnknown
IPR037138Histone deacetylase domain superfamilyHomologous Superfamily
IPR003084Class I/II Histone deacetylase HDACFamily
IPR023696Ureohydrolase domain superfamilyHomologous Superfamily
IPR039774Transcriptional regulatory protein Sin3-likeFamily
IPR013194Histone deacetylase interacting domainDomain
IPR003822Paired amphipathic helixRepeat
IPR036600Paired amphipathic helix superfamilyHomologous Superfamily
IPR031693Sin3, C-terminalDomain
C [auth D],
E [auth F]
IPR016197Chromo-like domain superfamilyHomologous Superfamily
C [auth D],
E [auth F]
IPR008676MRGFamily
C [auth D],
E [auth F]
IPR038217MRG, C-terminal domain superfamilyHomologous Superfamily
C [auth D],
E [auth F]
IPR000953Chromo/chromo shadow domainDomain
C [auth D],
E [auth F]
IPR053820MSL3 chromodomain-likeDomain
C [auth D],
E [auth F]
IPR026541MRG domainDomain
D [auth E],
F [auth G]
IPR001965Zinc finger, PHD-typeDomain
D [auth E],
F [auth G]
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
D [auth E],
F [auth G]
IPR052819Chromatin-associated regulatory proteinFamily
D [auth E],
F [auth G]
IPR019787Zinc finger, PHD-fingerDomain
D [auth E],
F [auth G]
IPR011011Zinc finger, FYVE/PHD-typeHomologous Superfamily
D [auth E],
F [auth G]
IPR019786Zinc finger, PHD-type, conserved siteConserved Site
G [auth O],
K [auth S]
IPR009072Histone-foldHomologous Superfamily
G [auth O],
K [auth S]
IPR007125Histone H2A/H2B/H3Domain
G [auth O],
K [auth S]
IPR000164Histone H3/CENP-AFamily
H [auth P],
L [auth T]
IPR009072Histone-foldHomologous Superfamily
H [auth P],
L [auth T]
IPR001951Histone H4Family
H [auth P],
L [auth T]
IPR035425CENP-T/Histone H4, histone foldDomain
H [auth P],
L [auth T]
IPR019809Histone H4, conserved siteConserved Site
H [auth P],
L [auth T]
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
I [auth Q],
M [auth U]
IPR009072Histone-foldHomologous Superfamily
I [auth Q],
M [auth U]
IPR007125Histone H2A/H2B/H3Domain
I [auth Q],
M [auth U]
IPR002119Histone H2AFamily
I [auth Q],
M [auth U]
IPR032454Histone H2A, C-terminal domainDomain
I [auth Q],
M [auth U]
IPR032458Histone H2A conserved siteConserved Site
J [auth R],
N [auth V]
IPR009072Histone-foldHomologous Superfamily
J [auth R],
N [auth V]
IPR007125Histone H2A/H2B/H3Domain
J [auth R],
N [auth V]
IPR055333Histone H2B, conserved siteConserved Site
J [auth R],
N [auth V]
IPR000558Histone H2BFamily