8S0E | pdb_00008s0e

H. sapiens OCCM bound to double stranded DNA


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth 8]SCOP2B SuperfamilyWinged helix DNA-binding domain 8057020 3000034 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth C]PF19675Origin recognition complex subunit 3 insertion domain (ORC3_ins)Origin recognition complex subunit 3 insertion domain- Family
J [auth C]PF18137Origin recognition complex winged helix C-terminal (ORC_WH_C)Origin recognition complex winged helix C-terminalThis is the C-terminal winged-helix (WH) DNA-binding domain of the origin recognition complex present in Drosophila melanogaster. The WH domain is responsible for recognizing origin sequences [1]. Domain
K [auth G]PF13191AAA ATPase domain (AAA_16)AAA ATPase domainThis family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Domain
K [auth G]PF22606Cdc6/ORC-like, ATPase lid domain (Cdc6-ORC-like_ATPase_lid)Cdc6/ORC-like, ATPase lid domainThis entry represents the AAA+ ATPase lid domain of eukaryotic Cdc6/ORC proteins and its homologues from archaea [1-5]. Domain
L [auth 3]PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins. Domain
M [auth A]PF17872AAA lid domain (AAA_lid_10)AAA lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
M [auth A]PF09079CDC6, C terminal winged helix domain (Cdc6_C)CDC6, C terminal winged helix domainThe C terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localisation factor, how ...The C terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localisation factor, however its exact function is, as yet, unknown. Putative functions include: (1) mediation of protein-protein interactions and (2) regulation of nucleotide binding and hydrolysis. Mutagenesis studies have shown that this domain is essential for appropriate Cdc6 activity [1].
Domain
M [auth A]PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
N [auth D]PF13191AAA ATPase domain (AAA_16)AAA ATPase domainThis family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Domain
N [auth D]PF14629Origin recognition complex (ORC) subunit 4 C-terminus (ORC4_C)Origin recognition complex (ORC) subunit 4 C-terminus- Family
O [auth E]PF13191AAA ATPase domain (AAA_16)AAA ATPase domainThis family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Domain
O [auth E]PF14630Origin recognition complex (ORC) subunit 5 C-terminus (ORC5_C)Origin recognition complex (ORC) subunit 5 C-terminusThis entry represents the C-terminus of origin recognition complex subunit 5 [1,2], which consists of a winged helix domain (WHD). Domain
O [auth E]PF21639ORC5, lid domain (ORC5_lid)ORC5, lid domainORC5 is a component of the origin recognition complex (ORC) that binds origins of replication. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. This is the lid domain, which with the N-terminal RecA-fold ...ORC5 is a component of the origin recognition complex (ORC) that binds origins of replication. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. This is the lid domain, which with the N-terminal RecA-fold domain, constitutes the well-known AAA+ domain [1].
Domain
C [auth 5]PF00493MCM P-loop domain (MCM)MCM P-loop domainDomain
C [auth 5]PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins. Domain
D [auth 8]PF16679DNA replication factor Cdt1 C-terminal domain (CDT1_C)DNA replication factor Cdt1 C-terminal domainThis is the C-terminal domain of DNA replication factor Cdt1. This domain binds the MCM complex [1]. Domain
E [auth 2]PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins. Domain
E [auth 2]PF00493MCM P-loop domain (MCM)MCM P-loop domainDomain
E [auth 2]PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins. Domain
E [auth 2]PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. Domain
F [auth 4]PF00493MCM P-loop domain (MCM)MCM P-loop domainDomain
F [auth 4]PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins. Domain
F [auth 4]PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. Domain
G [auth 6]PF14551MCM N-terminal domain (MCM_N)MCM N-terminal domainThis family contains the N-terminal domain of MCM proteins. Domain
G [auth 6]PF00493MCM P-loop domain (MCM)MCM P-loop domainDomain
G [auth 6]PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins. Domain
G [auth 6]PF17207MCM OB domain (MCM_OB)MCM OB domainThis family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif [2]. Domain
H [auth 7]PF00493MCM P-loop domain (MCM)MCM P-loop domainDomain
H [auth 7]PF17855MCM AAA-lid domain (MCM_lid)MCM AAA-lid domainThis entry represents the AAA-lid domain found in MCM proteins. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth X]DNA (39-mer)---
J [auth C]Origin recognition complex subunit 3
K [auth G]Cell division control protein 6 homolog
L [auth 3]DNA replication licensing factor MCM3
M [auth A]Origin recognition complex subunit 1
N [auth D]Origin recognition complex subunit 4
O [auth E]Origin recognition complex subunit 5
B [auth Y]DNA (39-mer)---
C [auth 5]DNA replication licensing factor MCM5
D [auth 8]DNA replication factor Cdt1
E [auth 2]DNA replication licensing factor MCM2
F [auth 4]DNA replication licensing factor MCM4
G [auth 6]DNA replication licensing factor MCM6
H [auth 7]DNA replication licensing factor MCM7
I [auth B]Origin recognition complex subunit 2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth C]IPR020795Origin recognition complex, subunit 3Family
J [auth C]IPR045663Origin recognition complex subunit 3, insertion domainDomain
J [auth C]IPR040855Origin recognition complex subunit 3, winged helix C-terminalDomain
J [auth C]IPR045667Origin recognition complex subunit 3, N-terminalDomain
K [auth G]IPR015163Cdc6, C-terminalDomain
K [auth G]IPR003593AAA+ ATPase domainDomain
K [auth G]IPR016314Cell division protein Cdc6/18Family
K [auth G]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
K [auth G]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
K [auth G]IPR054425Cdc6/ORC1-like, ATPase lid domainDomain
K [auth G]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
K [auth G]IPR041664Orc1-like, AAA ATPase domainDomain
K [auth G]IPR050311Origin Recognition Complex 1/Cell Division Control Protein 6Family
L [auth 3]IPR031327Mini-chromosome maintenance proteinFamily
L [auth 3]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
L [auth 3]IPR003593AAA+ ATPase domainDomain
L [auth 3]IPR001208MCM domainDomain
L [auth 3]IPR041562MCM, AAA-lid domainDomain
L [auth 3]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
L [auth 3]IPR027925MCM, N-terminal domainDomain
L [auth 3]IPR056575MCM3-like, winged helix domainDomain
L [auth 3]IPR008046DNA replication licensing factor Mcm3Family
L [auth 3]IPR033762MCM OB domainDomain
L [auth 3]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
M [auth A]IPR041083AAA lid domainDomain
M [auth A]IPR043151Bromo adjacent homology (BAH) domain superfamilyHomologous Superfamily
M [auth A]IPR001025Bromo adjacent homology (BAH) domainDomain
M [auth A]IPR015163Cdc6, C-terminalDomain
M [auth A]IPR003593AAA+ ATPase domainDomain
M [auth A]IPR003959ATPase, AAA-type, coreDomain
M [auth A]IPR050311Origin Recognition Complex 1/Cell Division Control Protein 6Family
M [auth A]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
N [auth D]IPR041664Orc1-like, AAA ATPase domainDomain
N [auth D]IPR032705Origin recognition complex subunit 4, C-terminalDomain
N [auth D]IPR003593AAA+ ATPase domainDomain
N [auth D]IPR016527Origin recognition complex subunit 4Family
N [auth D]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
O [auth E]IPR048866ORC5, lid domainDomain
O [auth E]IPR047088Origin recognition complex subunit 5, C-terminalDomain
O [auth E]IPR041664Orc1-like, AAA ATPase domainDomain
O [auth E]IPR020796Origin recognition complex, subunit 5Family
O [auth E]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth 5]IPR031327Mini-chromosome maintenance proteinFamily
C [auth 5]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
C [auth 5]IPR001208MCM domainDomain
C [auth 5]IPR041562MCM, AAA-lid domainDomain
C [auth 5]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth 5]IPR054125MCM5, C-terminal domainDomain
C [auth 5]IPR027925MCM, N-terminal domainDomain
C [auth 5]IPR033762MCM OB domainDomain
C [auth 5]IPR008048DNA replication licensing factor Mcm5Family
C [auth 5]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
D [auth 8]IPR038090DNA replication factor Cdt1, C-terminal WH domain superfamilyHomologous Superfamily
D [auth 8]IPR032054DNA replication factor Cdt1, C-terminalDomain
D [auth 8]IPR045173DNA replication factor Cdt1Family
D [auth 8]IPR014939CDT1 Geminin-binding domain-likeDomain
D [auth 8]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
E [auth 2]IPR031327Mini-chromosome maintenance proteinFamily
E [auth 2]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
E [auth 2]IPR001208MCM domainDomain
E [auth 2]IPR041562MCM, AAA-lid domainDomain
E [auth 2]IPR008045DNA replication licensing factor Mcm2Family
E [auth 2]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E [auth 2]IPR027925MCM, N-terminal domainDomain
E [auth 2]IPR033762MCM OB domainDomain
E [auth 2]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
F [auth 4]IPR027925MCM, N-terminal domainDomain
F [auth 4]IPR031327Mini-chromosome maintenance proteinFamily
F [auth 4]IPR008047Mini-chromosome maintenance complex protein 4Family
F [auth 4]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
F [auth 4]IPR033762MCM OB domainDomain
F [auth 4]IPR001208MCM domainDomain
F [auth 4]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
F [auth 4]IPR041562MCM, AAA-lid domainDomain
F [auth 4]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
G [auth 6]IPR008049DNA replication licensing factor Mcm6Family
G [auth 6]IPR041024Mcm6, C-terminal winged-helix domainDomain
G [auth 6]IPR031327Mini-chromosome maintenance proteinFamily
G [auth 6]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
G [auth 6]IPR001208MCM domainDomain
G [auth 6]IPR041562MCM, AAA-lid domainDomain
G [auth 6]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
G [auth 6]IPR027925MCM, N-terminal domainDomain
G [auth 6]IPR033762MCM OB domainDomain
G [auth 6]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
H [auth 7]IPR031327Mini-chromosome maintenance proteinFamily
H [auth 7]IPR008050DNA replication licensing factor Mcm7Family
H [auth 7]IPR018525Mini-chromosome maintenance, conserved siteConserved Site
H [auth 7]IPR003593AAA+ ATPase domainDomain
H [auth 7]IPR001208MCM domainDomain
H [auth 7]IPR041562MCM, AAA-lid domainDomain
H [auth 7]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
H [auth 7]IPR027925MCM, N-terminal domainDomain
H [auth 7]IPR033762MCM OB domainDomain
H [auth 7]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
I [auth B]IPR007220Origin recognition complex, subunit 2Family
I [auth B]IPR056773Origin recognition complex subunit 2, winged-helix domainDomain
I [auth B]IPR056772Origin recognition complex subunit 2, RecA-like domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
J [auth C]PharosQ9UBD5
K [auth G]PharosQ99741
L [auth 3]PharosP25205
M [auth A]PharosQ13415
N [auth D]PharosO43929
O [auth E]PharosO43913
C [auth 5]PharosP33992
D [auth 8]PharosQ9H211
E [auth 2]PharosP49736
F [auth 4]PharosP33991
G [auth 6]PharosQ14566
H [auth 7]PharosP33993
I [auth B]PharosQ13416