8X0K | pdb_00008x0k

Cryo-EM structure of Semliki Forest virus in complex with its receptor VLDLR(2-fold)

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
M [auth D]SCOP2B SuperfamilyLDL receptor-like module 8035671 3000728 SCOP2B (2022-06-29)
N [auth H]SCOP2B SuperfamilyLDL receptor-like module 8035671 3000728 SCOP2B (2022-06-29)
O [auth L]SCOP2B SuperfamilyLDL receptor-like module 8035671 3000728 SCOP2B (2022-06-29)
PSCOP2B SuperfamilyLDL receptor-like module 8035671 3000728 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
L [auth O]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
L [auth O]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
I [auth K]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
I [auth K]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
F [auth G]SCOP2B SuperfamilyViral glycoprotein, central and dimerisation domains 8037191 3000293 SCOP2B (2022-06-29)
F [auth G]SCOP2B SuperfamilyE set domains 8054997 3000070 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
J [auth M]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
G [auth I]SCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyTrypsin-like serine proteases 8042286 3000114 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B,
E [auth F],
H [auth J],
K [auth N]		PF00943Alphavirus E2 glycoprotein (Alpha_E2_glycop)Alphavirus E2 glycoprotein- Family
M [auth D],
N [auth H],
O [auth L],
P		PF00057Low-density lipoprotein receptor domain class A (Ldl_recept_a)Low-density lipoprotein receptor domain class A- Repeat
C,
F [auth G],
I [auth K],
L [auth O]		PF01589Alphavirus E1 glycoprotein (Alpha_E1_glycop)Alphavirus E1 glycoprotein- Family
A,
D [auth E],
G [auth I],
J [auth M]		PF00944Alphavirus core protein (Peptidase_S3)Alphavirus core proteinAlso known as coat protein C and capsid protein C. This makes the literature very confusing. Alphaviruses consist of a nucleoprotein core, a lipid membrane which envelopes the core, and glycoprotein spikes protruding from the lipid membrane. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B,
E [auth F],
H [auth J],
K [auth N]		Spike glycoprotein E2
M [auth D],
N [auth H],
O [auth L],
P		Very low-density lipoprotein receptor
C,
F [auth G],
I [auth K],
L [auth O]		Spike glycoprotein E1
A,
D [auth E],
G [auth I],
J [auth M]		Capsid protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B,
E [auth F],
H [auth J],
K [auth N]		IPR002533Alphavirus E3 spike glycoproteinDomain
B,
E [auth F],
H [auth J],
K [auth N]		IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
B,
E [auth F],
H [auth J],
K [auth N]		IPR014756Immunoglobulin E-setHomologous Superfamily
B,
E [auth F],
H [auth J],
K [auth N]		IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
B,
E [auth F],
H [auth J],
K [auth N]		IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
B,
E [auth F],
H [auth J],
K [auth N]		IPR009003Peptidase S1, PA clanHomologous Superfamily
B,
E [auth F],
H [auth J],
K [auth N]		IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
B,
E [auth F],
H [auth J],
K [auth N]		IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
B,
E [auth F],
H [auth J],
K [auth N]		IPR000936Alphavirus E2 glycoproteinFamily
B,
E [auth F],
H [auth J],
K [auth N]		IPR000930Peptidase S3, togavirinDomain
B,
E [auth F],
H [auth J],
K [auth N]		IPR002548Alphavirus E1 glycoproteinDomain
B,
E [auth F],
H [auth J],
K [auth N]		IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
B,
E [auth F],
H [auth J],
K [auth N]		IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
M [auth D],
N [auth H],
O [auth L],
P		IPR011042Six-bladed beta-propeller, TolB-likeHomologous Superfamily
M [auth D],
N [auth H],
O [auth L],
P		IPR002172Low-density lipoprotein (LDL) receptor class A repeatRepeat
M [auth D],
N [auth H],
O [auth L],
P		IPR018097EGF-like calcium-binding, conserved siteConserved Site
M [auth D],
N [auth H],
O [auth L],
P		IPR036055LDL receptor-like superfamilyHomologous Superfamily
M [auth D],
N [auth H],
O [auth L],
P		IPR000742EGF-like domainDomain
M [auth D],
N [auth H],
O [auth L],
P		IPR049883NOTCH1 EGF-like calcium-binding domainDomain
M [auth D],
N [auth H],
O [auth L],
P		IPR051221Low-density lipoprotein receptor-relatedFamily
M [auth D],
N [auth H],
O [auth L],
P		IPR000033LDLR class B repeatRepeat
M [auth D],
N [auth H],
O [auth L],
P		IPR001881EGF-like calcium-binding domainDomain
M [auth D],
N [auth H],
O [auth L],
P		IPR023415Low-density lipoprotein (LDL) receptor class A, conserved siteConserved Site
M [auth D],
N [auth H],
O [auth L],
P		IPR000152EGF-type aspartate/asparagine hydroxylation sitePTM
C,
F [auth G],
I [auth K],
L [auth O]		IPR002533Alphavirus E3 spike glycoproteinDomain
C,
F [auth G],
I [auth K],
L [auth O]		IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
C,
F [auth G],
I [auth K],
L [auth O]		IPR014756Immunoglobulin E-setHomologous Superfamily
C,
F [auth G],
I [auth K],
L [auth O]		IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
C,
F [auth G],
I [auth K],
L [auth O]		IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
C,
F [auth G],
I [auth K],
L [auth O]		IPR009003Peptidase S1, PA clanHomologous Superfamily
C,
F [auth G],
I [auth K],
L [auth O]		IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
C,
F [auth G],
I [auth K],
L [auth O]		IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
C,
F [auth G],
I [auth K],
L [auth O]		IPR000936Alphavirus E2 glycoproteinFamily
C,
F [auth G],
I [auth K],
L [auth O]		IPR000930Peptidase S3, togavirinDomain
C,
F [auth G],
I [auth K],
L [auth O]		IPR002548Alphavirus E1 glycoproteinDomain
C,
F [auth G],
I [auth K],
L [auth O]		IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
C,
F [auth G],
I [auth K],
L [auth O]		IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily
A,
D [auth E],
G [auth I],
J [auth M]		IPR002533Alphavirus E3 spike glycoproteinDomain
A,
D [auth E],
G [auth I],
J [auth M]		IPR038055Flaviviral glycoprotein E, dimerisation domainHomologous Superfamily
A,
D [auth E],
G [auth I],
J [auth M]		IPR014756Immunoglobulin E-setHomologous Superfamily
A,
D [auth E],
G [auth I],
J [auth M]		IPR042304Alphavirus E2 glycoprotein, domain AHomologous Superfamily
A,
D [auth E],
G [auth I],
J [auth M]		IPR036253Flavivirus glycoprotein, central and dimerisation domain superfamilyHomologous Superfamily
A,
D [auth E],
G [auth I],
J [auth M]		IPR009003Peptidase S1, PA clanHomologous Superfamily
A,
D [auth E],
G [auth I],
J [auth M]		IPR042305Alphavirus E2 glycoprotein, domain BHomologous Superfamily
A,
D [auth E],
G [auth I],
J [auth M]		IPR042306Alphavirus E2 glycoprotein, domain CHomologous Superfamily
A,
D [auth E],
G [auth I],
J [auth M]		IPR000936Alphavirus E2 glycoproteinFamily
A,
D [auth E],
G [auth I],
J [auth M]		IPR000930Peptidase S3, togavirinDomain
A,
D [auth E],
G [auth I],
J [auth M]		IPR002548Alphavirus E1 glycoproteinDomain
A,
D [auth E],
G [auth I],
J [auth M]		IPR000336Flavivirus/Alphavirus glycoprotein, immunoglobulin-like domain superfamilyHomologous Superfamily
A,
D [auth E],
G [auth I],
J [auth M]		IPR043504Peptidase S1, PA clan, chymotrypsin-like foldHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
M [auth D],
N [auth H],
O [auth L],
P		Pharos:  P98155