8XPM | pdb_00008xpm

Mature virion portal of phage lambda with DNA

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Z [auth f3]	SCOP2B Superfamily	Phage tail proteins	8040058	3000268	SCOP2B (2022-06-29)
T [auth f2]	SCOP2B Superfamily	Phage tail proteins	8040058	3000268	SCOP2B (2022-06-29)
N [auth f1]	SCOP2B Superfamily	Phage tail proteins	8040058	3000268	SCOP2B (2022-06-29)
LA [auth f5]	SCOP2B Superfamily	Phage tail proteins	8040058	3000268	SCOP2B (2022-06-29)
K [auth f]	SCOP2B Superfamily	Phage tail proteins	8040058	3000268	SCOP2B (2022-06-29)
FA [auth f4]	SCOP2B Superfamily	Phage tail proteins	8040058	3000268	SCOP2B (2022-06-29)
V [auth w2]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
U [auth W2]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
P [auth w1]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
O [auth W1]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
NA [auth w5]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
MA [auth W5]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
L [auth w]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
HA [auth w4]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
H [auth W]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
GA [auth W4]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
BA [auth w3]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
AA [auth W3]	SCOP2B Superfamily	Head-to-tail joining protein W, gpW	8033427	3000920	SCOP2B (2022-06-29)
W [auth U2]	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
Q [auth U1]	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
OA [auth U5]	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
IA [auth U4]	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
F [auth U]	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
CA [auth U3]	SCOP2B Superfamily	Phage tail protein-like	8035093	3001913	SCOP2B (2022-06-29)
ZA [auth O2]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
YA [auth o1]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
XA [auth O1]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
WA [auth o]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
VA [auth v2]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
UA [auth V2]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
TA [auth v1]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
SA [auth V1]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
RA [auth v]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
PB [auth r2]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
OB [auth R2]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
NB [auth r1]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
MB [auth R1]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
LB [auth r]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
KB [auth q2]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
JB [auth Q2]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
IB [auth q1]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
HB [auth Q1]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
GB [auth q]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
G [auth V]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
FB [auth p2]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
EB [auth P2]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
E [auth R]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
DB [auth p1]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
D [auth Q]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
CB [auth P1]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
C [auth P]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
BB [auth p]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
B [auth O]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)
AB [auth o2]	SCOP2B Superfamily	T6SS-like	8091256	3000580	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
CA [auth U3], F [auth U], IA [auth U4], OA [auth U5], Q [auth U1], CA [auth U3], F [auth U], IA [auth U4], OA [auth U5], Q [auth U1], W [auth U2]	PF06141	Phage minor tail protein U (Phage_tail_U)	Phage minor tail protein U	Tail fibre component U of bacteriophage.	Domain
AB [auth o2], B [auth O], BB [auth p], C [auth P], CB [auth P1], AB [auth o2], B [auth O], BB [auth p], C [auth P], CB [auth P1], D [auth Q], DB [auth p1], E [auth R], EB [auth P2], FB [auth p2], G [auth V], GB [auth q], HB [auth Q1], IB [auth q1], JB [auth Q2], KB [auth q2], LB [auth r], MB [auth R1], NB [auth r1], OB [auth R2], PB [auth r2], RA [auth v], SA [auth V1], TA [auth v1], UA [auth V2], VA [auth v2], WA [auth o], XA [auth O1], YA [auth o1], ZA [auth O2]	PF16461	Lambda phage tail tube protein, TTP (Phage_TTP_12)	Lambda phage tail tube protein, TTP	This family represents the phage-tail-tube protein from a set of Siphoviridae from Gammaproteobacteria. Tail tube proteins polymerise with the assistance of the Tail-tip complex, a tape measure protein and two chaperones. Infectivity of host is deliv ...	This family represents the phage-tail-tube protein from a set of Siphoviridae from Gammaproteobacteria. Tail tube proteins polymerise with the assistance of the Tail-tip complex, a tape measure protein and two chaperones. Infectivity of host is delivered through the tube [1]. Members of this family from hexameric ring arrangement [2].	Domain
AB [auth o2], B [auth O], BB [auth p], C [auth P], CB [auth P1], AB [auth o2], B [auth O], BB [auth p], C [auth P], CB [auth P1], D [auth Q], DB [auth p1], E [auth R], EB [auth P2], FB [auth p2], G [auth V], GB [auth q], HB [auth Q1], IB [auth q1], JB [auth Q2], KB [auth q2], LB [auth r], MB [auth R1], NB [auth r1], OB [auth R2], PB [auth r2], RA [auth v], SA [auth V1], TA [auth v1], UA [auth V2], VA [auth v2], WA [auth o], XA [auth O1], YA [auth o1], ZA [auth O2]	PF02368	Bacterial Ig-like domain (group 2) (Big_2)	Bacterial Ig-like domain (group 2)	This family consists of bacterial domains with an Ig-like fold. Members of this family are found in bacterial and phage surface proteins such as intimins.	Domain
A [auth B], DA [auth B3], EA [auth b3], JA [auth B4], KA [auth b4], A [auth B], DA [auth B3], EA [auth b3], JA [auth B4], KA [auth b4], M [auth b], PA [auth B5], QA [auth b5], R [auth B1], S [auth b1], X [auth B2], Y [auth b2]	PF05136	Phage portal protein, lambda family (Phage_portal_2)	Phage portal protein, lambda family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
FA [auth f4], K [auth f], LA [auth f5], N [auth f1], T [auth f2], FA [auth f4], K [auth f], LA [auth f5], N [auth f1], T [auth f2], Z [auth f3]	Head-tail connector protein FII	-	virion assembly viral process viral life cycle	virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part
J [auth DB]	DNA (92-MER)	-	-	-
I [auth DA]	DNA (104-MER)	-	-	-
AA [auth W3], BA [auth w3], GA [auth W4], H [auth W], HA [auth w4], AA [auth W3], BA [auth w3], GA [auth W4], H [auth W], HA [auth w4], L [auth w], MA [auth W5], NA [auth w5], O [auth W1], P [auth w1], U [auth W2], V [auth w2]	Head completion protein	-	viral process viral life cycle	virion component
CA [auth U3], F [auth U], IA [auth U4], OA [auth U5], Q [auth U1], CA [auth U3], F [auth U], IA [auth U4], OA [auth U5], Q [auth U1], W [auth U2]	Tail tube terminator protein	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral tail assembly	host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part virus tail virion component
AB [auth o2], B [auth O], BB [auth p], C [auth P], CB [auth P1], AB [auth o2], B [auth O], BB [auth p], C [auth P], CB [auth P1], D [auth Q], DB [auth p1], E [auth R], EB [auth P2], FB [auth p2], G [auth V], GB [auth q], HB [auth Q1], IB [auth q1], JB [auth Q2], KB [auth q2], LB [auth r], MB [auth R1], NB [auth r1], OB [auth R2], PB [auth r2], RA [auth v], SA [auth V1], TA [auth v1], UA [auth V2], VA [auth v2], WA [auth o], XA [auth O1], YA [auth o1], ZA [auth O2]	Tail tube protein	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly viral tail assembly	virus tail, tube virus tail virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part
A [auth B], DA [auth B3], EA [auth b3], JA [auth B4], KA [auth b4], A [auth B], DA [auth B3], EA [auth b3], JA [auth B4], KA [auth b4], M [auth b], PA [auth B5], QA [auth b5], R [auth B1], S [auth b1], X [auth B2], Y [auth b2]	Portal protein B	DNA binding binding nucleic acid binding structural molecule activity	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont genome ejection through host cell envelope, long flexible tail mechanism symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction virion assembly	protein-containing complex viral capsid virion component viral portal complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
FA [auth f4], K [auth f], LA [auth f5], N [auth f1], T [auth f2], FA [auth f4], K [auth f], LA [auth f5], N [auth f1], T [auth f2], Z [auth f3]	IPR053734	Bacteriophage Head-Tail Connecting Superfamily	Homologous Superfamily
FA [auth f4], K [auth f], LA [auth f5], N [auth f1], T [auth f2], FA [auth f4], K [auth f], LA [auth f5], N [auth f1], T [auth f2], Z [auth f3]	IPR008018	Bacteriophage tail attachment protein FII	Family
AA [auth W3], BA [auth w3], GA [auth W4], H [auth W], HA [auth w4], AA [auth W3], BA [auth w3], GA [auth W4], H [auth W], HA [auth w4], L [auth w], MA [auth W5], NA [auth w5], O [auth W1], P [auth w1], U [auth W2], V [auth w2]	IPR036626	Head-to-tail joining protein W superfamily	Homologous Superfamily
AA [auth W3], BA [auth w3], GA [auth W4], H [auth W], HA [auth w4], AA [auth W3], BA [auth w3], GA [auth W4], H [auth W], HA [auth w4], L [auth w], MA [auth W5], NA [auth w5], O [auth W1], P [auth w1], U [auth W2], V [auth w2]	IPR004174	Head-to-tail joining protein W	Family
CA [auth U3], F [auth U], IA [auth U4], OA [auth U5], Q [auth U1], CA [auth U3], F [auth U], IA [auth U4], OA [auth U5], Q [auth U1], W [auth U2]	IPR035934	Phage tail protein-like superfamily	Homologous Superfamily
CA [auth U3], F [auth U], IA [auth U4], OA [auth U5], Q [auth U1], CA [auth U3], F [auth U], IA [auth U4], OA [auth U5], Q [auth U1], W [auth U2]	IPR009312	Minor tail protein U-like	Family
CA [auth U3], F [auth U], IA [auth U4], OA [auth U5], Q [auth U1], CA [auth U3], F [auth U], IA [auth U4], OA [auth U5], Q [auth U1], W [auth U2]	IPR038512	GpU-like superfamily	Homologous Superfamily
AB [auth o2], B [auth O], BB [auth p], C [auth P], CB [auth P1], AB [auth o2], B [auth O], BB [auth p], C [auth P], CB [auth P1], D [auth Q], DB [auth p1], E [auth R], EB [auth P2], FB [auth p2], G [auth V], GB [auth q], HB [auth Q1], IB [auth q1], JB [auth Q2], KB [auth q2], LB [auth r], MB [auth R1], NB [auth r1], OB [auth R2], PB [auth r2], RA [auth v], SA [auth V1], TA [auth v1], UA [auth V2], VA [auth v2], WA [auth o], XA [auth O1], YA [auth o1], ZA [auth O2]	IPR003343	Bacterial Ig-like domain, group 2	Domain
AB [auth o2], B [auth O], BB [auth p], C [auth P], CB [auth P1], AB [auth o2], B [auth O], BB [auth p], C [auth P], CB [auth P1], D [auth Q], DB [auth p1], E [auth R], EB [auth P2], FB [auth p2], G [auth V], GB [auth q], HB [auth Q1], IB [auth q1], JB [auth Q2], KB [auth q2], LB [auth r], MB [auth R1], NB [auth r1], OB [auth R2], PB [auth r2], RA [auth v], SA [auth V1], TA [auth v1], UA [auth V2], VA [auth v2], WA [auth o], XA [auth O1], YA [auth o1], ZA [auth O2]	IPR032494	Lambda phage tail tube protein, N-terminal	Domain
A [auth B], DA [auth B3], EA [auth b3], JA [auth B4], KA [auth b4], A [auth B], DA [auth B3], EA [auth b3], JA [auth B4], KA [auth b4], M [auth b], PA [auth B5], QA [auth b5], R [auth B1], S [auth b1], X [auth B2], Y [auth b2]	IPR006429	Phage portal protein, lambda family	Family