8YZ2 | pdb_00008yz2

Cryo-EM structure of a tri-heme cytochrome-associated RC-LH1 complex from a marine photoheterotrophic bacterium, purified with magnesium solutions


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
MA [auth C]PF02276Photosynthetic reaction centre cytochrome C subunit (CytoC_RC)Photosynthetic reaction centre cytochrome C subunit- Family
LA [auth H]PF03967Photosynthetic reaction centre, H-chain N-terminal region (PRCH)Photosynthetic reaction centre, H-chain N-terminal region- Family
LA [auth H]PF05239PRC-barrel domain (PRC)PRC-barrel domainThe PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, ...The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain [1].
Domain
KA [auth L]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
JA [auth M]PF00124Photosynthetic reaction centre protein (Photo_RC)Photosynthetic reaction centre protein- Family
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunitDomain
PF00556Antenna complex alpha/beta subunit (LHC)Antenna complex alpha/beta subunitDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
MA [auth C]Photosynthetic reaction center cytochrome c subunit
LA [auth H]Reaction center protein H chain-
KA [auth L]Reaction center protein L chain
JA [auth M]Reaction center protein M chain
Antenna pigment protein beta chain
B [auth O]Reaction center protein O chain- -
Antenna pigment protein alpha chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
MA [auth C]IPR036280Multiheme cytochrome superfamilyHomologous Superfamily
MA [auth C]IPR023119Multihaem cytochrome, PRC subunit superfamilyHomologous Superfamily
MA [auth C]IPR003158Photosynthetic reaction centre, cytochrome c subunitFamily
LA [auth H]IPR014747Bacterial photosynthetic reaction centre, H-chain, C-terminalHomologous Superfamily
LA [auth H]IPR015810Photosynthetic reaction centre, H subunit, N-terminalDomain
LA [auth H]IPR005652Photosynthetic reaction centre, H subunitFamily
LA [auth H]IPR037097Photosynthetic reaction centre, H subunit, N-terminal domain superfamilyHomologous Superfamily
LA [auth H]IPR011033PRC-barrel-like superfamilyHomologous Superfamily
LA [auth H]IPR027275PRC-barrel domainDomain
KA [auth L]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
KA [auth L]IPR000484Photosynthetic reaction centre, L/MFamily
KA [auth L]IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
KA [auth L]IPR005871Photosynthetic reaction centre, L subunitFamily
JA [auth M]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
JA [auth M]IPR005781Photosynthetic reaction centre, M subunitFamily
JA [auth M]IPR000484Photosynthetic reaction centre, L/MFamily
JA [auth M]IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
IPR000066Antenna complex, alpha/beta subunitDomain
IPR023624Antenna complex, beta domain superfamilyHomologous Superfamily
IPR035889Light-harvesting complexHomologous Superfamily
IPR023623Antenna complex, beta subunit, conserved siteConserved Site
IPR002362Light-harvesting protein B beta chainFamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR018332Antenna complex, alpha subunitFamily
IPR002361Antenna complex, alpha subunit conserved siteConserved Site
IPR035889Light-harvesting complexHomologous Superfamily