Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyUbiquitin-like8038575 3000157 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyUbiquitin-like8038575 3000157 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyVHL8041313 3000841 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyVHL8041313 3000841 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyBromodomain8084299 3001843 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyBromodomain8084299 3001843 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00240e8g1pA1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00240ECOD (1.6)
DPF00240e8g1pD1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00240ECOD (1.6)
CPF01847e8g1pC2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Prealbumin-likeF: PF01847ECOD (1.6)
CPF17211e8g1pC1 A: alpha arraysX: SOCS box-like (From Topology)H: SOCS box-like (From Topology)T: SOCS box-likeF: PF17211ECOD (1.6)
FPF01847e8g1pF1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Prealbumin-likeF: PF01847ECOD (1.6)
FPF17211e8g1pF2 A: alpha arraysX: SOCS box-like (From Topology)H: SOCS box-like (From Topology)T: SOCS box-likeF: PF17211ECOD (1.6)
EPF03931e8g1pE1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: PF03931ECOD (1.6)
BPF03931e8g1pB1 A: a+b two layersX: POZ domain (From Topology)H: POZ domain (From Topology)T: POZ domainF: PF03931ECOD (1.6)
GPF00439e8g1pG1 A: alpha bundlesX: Bromodomain-likeH: Bromodomain (From Topology)T: BromodomainF: PF00439ECOD (1.6)
HPF00439e8g1pH1 A: alpha bundlesX: Bromodomain-likeH: Bromodomain (From Topology)T: BromodomainF: PF00439ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, D
PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
C, F
PF17211VHL box domain (VHL_C)VHL box domainThis domain represents the short C-terminal alpha helical domain from the VHL protein [1].Domain
C, F
PF01847VHL beta domain (VHL)VHL beta domainVHL forms a ternary complex with the elonginB Swiss:O44226 and elonginC Swiss:O13292 proteins. This complex binds Cul2, which then is involved in regulation of vascular endothelial growth factor Swiss:P15692 mRNA.Domain
B, E
PF03931Skp1 family, tetramerisation domain (Skp1_POZ)Skp1 family, tetramerisation domain- Domain
G, H
PF00439Bromodomain (Bromodomain)BromodomainBromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine [3].Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, D
Elongin-B
C, F
von Hippel-Lindau disease tumor suppressor
B, E
Elongin-C
G, H
Probable global transcription activator SNF2L2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, D
IPR000626Ubiquitin-like domainDomain
A, D
IPR039049Elongin BFamily
A, D
IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
C, F
IPR037139von Hippel-Lindau disease tumour suppressor, alpha domain superfamilyHomologous Superfamily
C, F
IPR022772von Hippel-Lindau disease tumour suppressor, beta/alpha domainDomain
C, F
IPR024053von Hippel-Lindau disease tumour suppressor, beta domainDomain
C, F
IPR024048von Hippel-Lindau disease tumour suppressor, alpha domainDomain
C, F
IPR036208VHL superfamilyHomologous Superfamily
C, F
IPR037140von Hippel-Lindau disease tumour suppressor, beta domain superfamilyHomologous Superfamily
B, E
IPR016073SKP1 component, POZ domainDomain
B, E
IPR001232S-phase kinase-associated protein 1-likeFamily
B, E
IPR039948Elongin-CFamily
B, E
IPR011333SKP1/BTB/POZ domain superfamilyHomologous Superfamily
G, H
IPR018359Bromodomain, conserved siteConserved Site
G, H
IPR049730SNF2/RAD5-like, C-terminal helicase domainDomain
G, H
IPR014978Glutamine-Leucine-Glutamine, QLQDomain
G, H
IPR006576BRK domainDomain
G, H
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
G, H
IPR037259BRK domain superfamilyHomologous Superfamily
G, H
IPR001650Helicase, C-terminal domain-likeDomain
G, H
IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
G, H
IPR036427Bromodomain-like superfamilyHomologous Superfamily
G, H
IPR029295Snf2, ATP coupling domainDomain
G, H
IPR000330SNF2, N-terminalDomain
G, H
IPR001487BromodomainDomain
G, H
IPR038718SNF2-like, N-terminal domain superfamilyHomologous Superfamily
G, H
IPR014012Helicase/SANT-associated domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A, D
PharosQ15370
C, F
PharosP40337
B, E
PharosQ15369
G, H
PharosP51531