9AY6 | pdb_00009ay6

HIV BG505.v5.2 (N289/N241) SOSIP Env in Complex with V5 pAb from Rh.33203


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B Superfamilygp120 core 8080371 3001390 SCOP2B (2022-06-29)
ESCOP2B Superfamilygp120 core 8080371 3001390 SCOP2B (2022-06-29)
CSCOP2B Superfamilygp120 core 8080371 3001390 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C, E
PF00516Envelope glycoprotein GP120 (GP120)Envelope glycoprotein GP120The envelope glycoprotein Gp160 of HIV1 is cleaved into the surface protein Gp120 and the transmembrane protein Gp41. The entry of HIV requires interaction of viral GP120 with the CD4 glycoprotein (Swiss:P01730) and a chemokine receptor on the cell s ...The envelope glycoprotein Gp160 of HIV1 is cleaved into the surface protein Gp120 and the transmembrane protein Gp41. The entry of HIV requires interaction of viral GP120 with the CD4 glycoprotein (Swiss:P01730) and a chemokine receptor on the cell surface [1]. Gp160 us proteolytically cleaved n the trans-Golgi and activated by cellular furin or furin-like proteases to produce gp120 and gp41 [1,2].
Domain
B, D, F
PF00517Retroviral envelope protein (GP41)Retroviral envelope protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C, E
Surface protein gp120
B, D, F
Transmembrane protein gp41
H [auth L]NHP Polyclonal Antibody V5 Epitope - Predicted Heavy Chain---
G [auth H]NHP Polyclonal Antibody V5 Epitope - Predicted Light Chain---