9C3C | pdb_00009c3c

Cryo-EM structure of native dystrophin-glycoprotein complex (DGC)


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF18424Alpha-Dystroglycan N-terminal domain 2 (a_DG1_N2)Alpha-Dystroglycan N-terminal domain 2This is the second N-terminal domain found in alpha-Dystroglycan (DG). The murine skeletal muscle N-terminal alpha-DG region, contains two autonomous domains; the first identified as an Ig-like and the second resembling ribosomal RNA-binding proteins ...This is the second N-terminal domain found in alpha-Dystroglycan (DG). The murine skeletal muscle N-terminal alpha-DG region, contains two autonomous domains; the first identified as an Ig-like and the second resembling ribosomal RNA-binding proteins [1]. This domain is similar to the small subunit ribosomal protein S6 of Thermus thermophilus (S6 domain). It is suggested that the S6 domain may be of functional relevance for LARGE (like-acetylglucosaminyltransferase) recognition along the alpha-DG maturation pathway [2].
Domain
PF20989Sarcoglycan alpha/epsilon second domain (Sarcoglycan_2_C)Sarcoglycan alpha/epsilon second domainSarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex ...Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear [1]. This family contains alpha and epsilon members and represents the second domain which has an Ig-like fold.
Domain
PF05454Dystroglycan (Dystrophin-associated glycoprotein 1) (DAG1)Dystroglycan (Dystrophin-associated glycoprotein 1)- Family
C [auth D]PF09069EF-hand (EF-hand_3)EF-handMembers of this family adopt a helix-loop-helix motif, as per other EF hand domains. However, since they do not contain the canonical pattern of calcium binding residues found in many EF hand domains, they do not bind calcium ions. The main function ...Members of this family adopt a helix-loop-helix motif, as per other EF hand domains. However, since they do not contain the canonical pattern of calcium binding residues found in many EF hand domains, they do not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (Pfam:PF00397), enhancing dystroglycan binding [1].
Domain
C [auth D]PF00569Zinc finger, ZZ type (ZZ)Zinc finger, ZZ typeZinc finger present in dystrophin, CBP/p300. ZZ in dystrophin binds calmodulin. Putative zinc finger; binding not yet shown. Four to six cysteine residues in its sequence are responsible for coordinating zinc ions, to reinforce the structure [2]. Domain
C [auth D]PF04790Sarcoglycan complex subunit protein (Sarcoglycan_1)Sarcoglycan complex subunit protein- Family
C [auth D]PF09068EF hand (EF-hand_2)EF handMembers of this family adopt a helix-loop-helix motif, as per other EF hand domains. However, since they do not contain the canonical pattern of calcium binding residues found in many EF hand domains, they do not bind calcium ions. The main function ...Members of this family adopt a helix-loop-helix motif, as per other EF hand domains. However, since they do not contain the canonical pattern of calcium binding residues found in many EF hand domains, they do not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (Pfam:PF00397), enhancing dystroglycan binding [1].
Domain
C [auth D]PF00397WW domain (WW)WW domainThe WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro. Domain
I [auth V]PF09069EF-hand (EF-hand_3)EF-handMembers of this family adopt a helix-loop-helix motif, as per other EF hand domains. However, since they do not contain the canonical pattern of calcium binding residues found in many EF hand domains, they do not bind calcium ions. The main function ...Members of this family adopt a helix-loop-helix motif, as per other EF hand domains. However, since they do not contain the canonical pattern of calcium binding residues found in many EF hand domains, they do not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (Pfam:PF00397), enhancing dystroglycan binding [1].
Domain
I [auth V]PF00569Zinc finger, ZZ type (ZZ)Zinc finger, ZZ typeZinc finger present in dystrophin, CBP/p300. ZZ in dystrophin binds calmodulin. Putative zinc finger; binding not yet shown. Four to six cysteine residues in its sequence are responsible for coordinating zinc ions, to reinforce the structure [2]. Domain
I [auth V]PF09068EF hand (EF-hand_2)EF handMembers of this family adopt a helix-loop-helix motif, as per other EF hand domains. However, since they do not contain the canonical pattern of calcium binding residues found in many EF hand domains, they do not bind calcium ions. The main function ...Members of this family adopt a helix-loop-helix motif, as per other EF hand domains. However, since they do not contain the canonical pattern of calcium binding residues found in many EF hand domains, they do not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (Pfam:PF00397), enhancing dystroglycan binding [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Alpha-dystroglycan
Beta-dystroglycan
C [auth D]Dystrophin
D [auth a]Alpha-sarcoglycan -
E [auth b]Beta-sarcoglycan-
F [auth d]Sarcoglycan delta-
G [auth g]Gamma-sarcoglycan-
H [auth n]Sarcospan- -
I [auth V]Dystrobrevin

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR015919Cadherin-like superfamilyHomologous Superfamily
IPR006644Dystroglycan-type cadherin-likeDomain
IPR008465Dystroglycan, C-terminalDomain
IPR027468Alpha-dystroglycan domain 2Homologous Superfamily
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR041631Alpha-dystroglycan N-terminal domain 2Domain
IPR030398DG-type SEA domainDomain
IPR015919Cadherin-like superfamilyHomologous Superfamily
IPR006644Dystroglycan-type cadherin-likeDomain
IPR008465Dystroglycan, C-terminalDomain
IPR027468Alpha-dystroglycan domain 2Homologous Superfamily
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR041631Alpha-dystroglycan N-terminal domain 2Domain
IPR030398DG-type SEA domainDomain
C [auth D]IPR015153EF-hand domain, type 1Domain
C [auth D]IPR043145Zinc finger, ZZ-type superfamilyHomologous Superfamily
C [auth D]IPR015154EF-hand domain, type 2Domain
C [auth D]IPR036020WW domain superfamilyHomologous Superfamily
C [auth D]IPR050774KCMF1 and DystrophinFamily
C [auth D]IPR018159Spectrin/alpha-actininRepeat
C [auth D]IPR000433Zinc finger, ZZ-typeDomain
C [auth D]IPR001202WW domainDomain
C [auth D]IPR011992EF-hand domain pairHomologous Superfamily
C [auth D]IPR002017Spectrin repeatRepeat
D [auth a]IPR015919Cadherin-like superfamilyHomologous Superfamily
D [auth a]IPR006644Dystroglycan-type cadherin-likeDomain
D [auth a]IPR048346Sarcoglycan alpha/epsilon, N-terminal domainDomain
D [auth a]IPR048347Sarcoglycan alpha/epsilon second domainDomain
D [auth a]IPR008908Sarcoglycan alpha/epsilonFamily
E [auth b]IPR006875Sarcoglycan complex subunit proteinFamily
E [auth b]IPR027659Beta-sarcoglycanFamily
F [auth d]IPR006875Sarcoglycan complex subunit proteinFamily
F [auth d]IPR039972Sarcoglycan gamma/delta/zetaFamily
G [auth g]IPR006875Sarcoglycan complex subunit proteinFamily
G [auth g]IPR039972Sarcoglycan gamma/delta/zetaFamily
H [auth n]IPR007237CD20-like familyFamily
H [auth n]IPR030429SarcospanFamily
I [auth V]IPR017432DistrobrevinFamily
I [auth V]IPR015153EF-hand domain, type 1Domain
I [auth V]IPR043145Zinc finger, ZZ-type superfamilyHomologous Superfamily
I [auth V]IPR015154EF-hand domain, type 2Domain
I [auth V]IPR050774KCMF1 and DystrophinFamily
I [auth V]IPR000433Zinc finger, ZZ-typeDomain
I [auth V]IPR011992EF-hand domain pairHomologous Superfamily