9C7V | pdb_00009c7v

Structure of the human BOS:human EMC complex in GDN


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth 3]SCOP2B SuperfamilyYidC transmembrane domain-like 8101852 3002720 SCOP2B (2022-06-29)
G [auth 6]SCOP2B SuperfamilyEMC6/GET2-like 8101858 3002721 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 10]PF21203ER membrane protein complex subunit 10 (ECM10)ER membrane protein complex subunit 10EMC10 is a component of the endoplasmic reticulum (ER) membrane protein complex (EMC), a conserved co- and post-translational insertase which enables the energy-independent insertion into ER membranes of newly synthesized membrane proteins [1-4]. It ...EMC10 is a component of the endoplasmic reticulum (ER) membrane protein complex (EMC), a conserved co- and post-translational insertase which enables the energy-independent insertion into ER membranes of newly synthesized membrane proteins [1-4]. It is involved in the co-translational insertion of multi-pass membrane proteins in which stop-transfer membrane-anchor sequences become ER membrane spanning helices. This complex controls the topology of multi-pass membrane proteins, such as G protein-coupled receptors [1,4]. This entry represents a conserved domain found in these proteins, which adopts a beta-sandwich fold.
Domain
J [auth A]PF04389Peptidase family M28 (Peptidase_M28)Peptidase family M28Domain
L [auth C]PF09767Predicted membrane protein (DUF2053) (DUF2053)Predicted membrane protein (DUF2053)- Family
B [auth 1]PF07774ER membrane protein complex subunit 1, C-terminal (EMC1_C)ER membrane protein complex subunit 1, C-terminalThis is the C-terminal domain of ER membrane protein complex subunit 1. ER membrane protein complex subunit 1 is a component of the ER membrane protein complex (EMC, composed of EMC1, EMC2, EMC3, EMC4, EMC5 and EMC6). In Saccharomyces cerevisiae, the ...This is the C-terminal domain of ER membrane protein complex subunit 1. ER membrane protein complex subunit 1 is a component of the ER membrane protein complex (EMC, composed of EMC1, EMC2, EMC3, EMC4, EMC5 and EMC6). In Saccharomyces cerevisiae, the EMC seems to be required for efficient folding of proteins in the endoplasmic reticulum (ER) [1].
Domain
C [auth 2]PF22890EMC2 TPR-like repeat domain (TPR_EMC2)EMC2 TPR-like repeat domain- Repeat
D [auth 3]PF01956Integral membrane protein EMC3/TMCO1-like (EMC3_TMCO1)Integral membrane protein EMC3/TMCO1-like- Family
F [auth 5]PF10270Membrane magnesium transporter (MMgT)Membrane magnesium transporter- Family
G [auth 6]PF07019EMC6 (EMC6)EMC6- Family
H [auth 7]PF09430ER membrane protein complex subunit 7, beta-sandwich domain (EMC7_beta-sandw)ER membrane protein complex subunit 7, beta-sandwich domainThis is the beta-sandwich domain found in ER membrane protein complex subunit 7 (EMC7) [1,2], which is an integral membrane component of the EMC. EMC is widely conserved and involved in membrane protein biogenesis. It mediates the insertion into endo ...This is the beta-sandwich domain found in ER membrane protein complex subunit 7 (EMC7) [1,2], which is an integral membrane component of the EMC. EMC is widely conserved and involved in membrane protein biogenesis. It mediates the insertion into endoplasmic reticulum membranes of newly synthesized membrane proteins in an energy-independent manner, both post-translational insertions of tail-anchored proteins and co-translational insertion of multipass membrane proteins [3,4]. This entry includes UPF0620 protein C83.10 from S. pombe, an orthologue of animal EMC7. This domain is also found in nodal modulators, which have been identified as part of a protein complex that participates in the nodal signalling pathway during vertebrate development [5].
Domain
I [auth 8]PF03665Uncharacterised protein family (UPF0172) (UPF0172)Uncharacterised protein family (UPF0172)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 10]ER membrane protein complex subunit 10-
J [auth A]Nicalin
K [auth B]BOS complex subunit NOMO2
L [auth C]Transmembrane protein 147
B [auth 1]ER membrane protein complex subunit 1-
C [auth 2]ER membrane protein complex subunit 2-
D [auth 3]ER membrane protein complex subunit 3-
E [auth 4]ER membrane protein complex subunit 4-
F [auth 5]Membrane magnesium transporter 1
G [auth 6]ER membrane protein complex subunit 6-
H [auth 7]ER membrane protein complex subunit 7
I [auth 8]ER membrane protein complex subunit 8-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
J [auth A]IPR007484Peptidase M28Domain
J [auth A]IPR016574NicalinFamily
K [auth B]IPR013784Carbohydrate-binding-like foldHomologous Superfamily
K [auth B]IPR056187NOMO, eighth prealbumin-like domainDomain
K [auth B]IPR056190NOMO, fifth transthyretin-like domainDomain
K [auth B]IPR056191NOMO, C-terminal transthyretin-like domainDomain
K [auth B]IPR056319NOMO, seventh transthyretin-like domainDomain
K [auth B]IPR008969Carboxypeptidase-like, regulatory domain superfamilyHomologous Superfamily
K [auth B]IPR055075NOMO-like, N-terminal beta-sandwich domainDomain
K [auth B]IPR056189NOMO, third transthyretin-like domainDomain
K [auth B]IPR055073NOMO-like, ninth beta-sandwich domainDomain
K [auth B]IPR013783Immunoglobulin-like foldHomologous Superfamily
K [auth B]IPR056188NOMO, sixth transthyretin-like domainDomain
K [auth B]IPR055074NOMO, second beta-sandwich domainDomain
K [auth B]IPR051417Serine-Aspartate Repeat-ContainingFamily
K [auth B]IPR041033SpaA-like, prealbumin fold domain subgroup 1Domain
L [auth C]IPR019164Transmembrane protein 147Family
B [auth 1]IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
B [auth 1]IPR011678ER membrane protein complex subunit 1, C-terminalDomain
B [auth 1]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
B [auth 1]IPR026895ER membrane protein complex subunit 1Family
C [auth 2]IPR039856ER membrane protein complex subunit 2-likeFamily
C [auth 2]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
C [auth 2]IPR055217EMC2, TPR-like domainDomain
C [auth 2]IPR019734Tetratricopeptide repeatRepeat
D [auth 3]IPR008568ER membrane protein complex subunit 3Family
D [auth 3]IPR002809Integral membrane protein EMC3/TMCO1-likeFamily
E [auth 4]IPR009445ER membrane protein complex subunit 4Family
F [auth 5]IPR018937Membrane magnesium transporterFamily
G [auth 6]IPR008504ER membrane protein complex subunit 6Family
G [auth 6]IPR029008ER membrane protein complex subunit 6-likeFamily
H [auth 7]IPR013784Carbohydrate-binding-like foldHomologous Superfamily
H [auth 7]IPR019008ER membrane protein complex subunit 7, beta-sandwich domainDomain
H [auth 7]IPR039163ER membrane protein complex subunit 7Family
I [auth 8]IPR037518MPN domainDomain
I [auth 8]IPR005366ER membrane protein complex subunit 8/9Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth 10]PharosQ5UCC4
J [auth A]PharosQ969V3
L [auth C]PharosQ9BVK8
B [auth 1]PharosQ8N766
C [auth 2]PharosQ15006
D [auth 3]PharosQ9P0I2
E [auth 4]PharosQ5J8M3
F [auth 5]PharosQ8N4V1
G [auth 6]PharosQ9BV81
H [auth 7]PharosQ9NPA0
I [auth 8]PharosO43402