9F6O | pdb_00009f6o

Human divalent metal transporter 1 (DMT1/SLC11A2) in complex with sybody 1, in an occluded state

External Resource: Annotation

SAbDab Antibody Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: mpstruc

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
B	Heavy Chain	IGHV1	-	natural resistance-associated macrophage protein 2	SAbDab (2025-10-10)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01566	Natural resistance-associated macrophage protein-like (Nramp)	Natural resistance-associated macrophage protein-like	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Sybody 1	-	-	-
A	Natural resistance-associated macrophage protein 2	cobalt ion transmembrane transporter activity monoatomic cation transmembrane transporter activity inorganic molecular entity transmembrane transporter activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity transition metal ion transmembrane transporter activity metal ion transmembrane transporter activity transmembrane transporter activity copper ion transmembrane transporter activity manganese ion transmembrane transporter activity proton transmembrane transporter activity solute:monoatomic cation symporter activity secondary active transmembrane transporter activity cobalt ion transmembrane transporter activity monoatomic cation transmembrane transporter activity inorganic molecular entity transmembrane transporter activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity transition metal ion transmembrane transporter activity metal ion transmembrane transporter activity transmembrane transporter activity copper ion transmembrane transporter activity manganese ion transmembrane transporter activity proton transmembrane transporter activity solute:monoatomic cation symporter activity secondary active transmembrane transporter activity active transmembrane transporter activity solute:proton symporter activity symporter activity zinc ion transmembrane transporter activity cation binding transition metal ion binding ion binding binding cadmium ion binding metal ion binding small molecule binding vanadium ion transmembrane transporter activity nickel cation transmembrane transporter activity cadmium ion transmembrane transporter activity iron ion transmembrane transporter activity ferrous iron transmembrane transporter activity protein-containing complex binding retromer complex binding lead ion transmembrane transporter activity	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis developmental process multicellular organismal process erythrocyte development cellular developmental process intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis developmental process multicellular organismal process erythrocyte development cellular developmental process hemopoiesis cell development erythrocyte differentiation multicellular organismal-level homeostasis myeloid cell differentiation immune system process cell differentiation anatomical structure development myeloid cell development homeostasis of number of cells cellular process myeloid cell homeostasis erythrocyte homeostasis localization lead ion transport transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport multicellular organismal-level iron ion homeostasis multicellular organismal-level chemical homeostasis response to stimulus response to metal ion response to iron ion response to chemical monoatomic ion transmembrane transport cadmium ion transport inorganic ion transmembrane transport inorganic cation transmembrane transport transmembrane transport monoatomic cation transmembrane transport cadmium ion transmembrane transport transition metal ion transport cellular response to stimulus response to oxidative stress cellular response to chemical stimulus cellular response to stress response to stress cellular response to oxidative stress cellular response to chemical stress response to decreased oxygen levels response to hypoxia response to oxygen levels response to abiotic stimulus iron ion transport iron ion transmembrane transport heme metabolic process pigment metabolic process porphyrin-containing compound biosynthetic process tetrapyrrole metabolic process heme biosynthetic process pigment biosynthetic process tetrapyrrole biosynthetic process biosynthetic process metabolic process porphyrin-containing compound metabolic process cellular localization iron import into cell establishment of localization in cell nickel cation transport detection of stimulus detection of chemical stimulus detection of oxygen copper ion transport cell projection organization plasma membrane bounded cell projection morphogenesis neuron projection development cell morphogenesis cellular component organization neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis dendrite development cellular component organization or biogenesis system development plasma membrane bounded cell projection organization dendrite morphogenesis nervous system development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron development cobalt ion transport vanadium ion transport manganese ion transport behavior system process learning or memory nervous system process cognition	cellular anatomical structure membrane apical part of cell membrane-bounded organelle endosome membrane intracellular anatomical structure endosome intracellular vesicle late endosome membrane intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane bounding membrane of organelle cellular anatomical structure membrane apical part of cell membrane-bounded organelle endosome membrane intracellular anatomical structure endosome intracellular vesicle late endosome membrane intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane organelle late endosome cytoplasm vesicle organelle membrane vacuolar membrane lytic vacuole vacuole lytic vacuole membrane lysosomal membrane lysosome Golgi apparatus subcompartment Golgi apparatus organelle subcompartment trans-Golgi network recycling endosome extracellular vesicle extracellular organelle extracellular region extracellular membrane-bounded organelle perinuclear region of cytoplasm mitochondrial membrane mitochondrion organelle outer membrane organelle envelope mitochondrial envelope mitochondrial outer membrane outer membrane protein-containing complex paraferritin complex cell periphery plasma membrane plasma membrane region apical plasma membrane cell surface early endosome recycling endosome membrane basal part of cell early endosome membrane brush border membrane cluster of actin-based cell projections plasma membrane bounded cell projection brush border cell projection cell projection membrane nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001046	NRAMP family	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P49281	hereditary hemochromatosis iron deficiency anemia anemia, hypochromic microcytic with iron overload liver cancer microcytic anemia with liver iron overload osteosarcoma tuberculosis anemia colorectal cancer endogenous depression large cell medulloblastoma lung adenocarcinoma malignant mesothelioma ovarian cancer congenital anemia hereditary hemochromatosis iron deficiency anemia anemia, hypochromic microcytic with iron overload liver cancer microcytic anemia with liver iron overload osteosarcoma tuberculosis anemia colorectal cancer endogenous depression large cell medulloblastoma lung adenocarcinoma malignant mesothelioma ovarian cancer congenital anemia glioblastoma invasive ductal breast carcinoma malignant colon neoplasm psoriasis ANEMIA, HYPOCHROMIC MICROCYTIC, WITH IRON OVERLOAD 1 liver neoplasm malignant glioma

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Solute Carrier (SLC) Transporter Superfamily	SLC11A2 divalent metal transporter 1 (DMT1) with bound Mn²⁺, occluded state

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.