9G8M | pdb_00009g8m

human 80S ribosome bound by a SKI2-exosome complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth N]SCOP2B SuperfamilyRibonuclease PH domain 2-like 8034782 3000346 SCOP2B (2022-06-29)
C [auth N]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8034801 3000100 SCOP2B (2022-06-29)
E [auth F]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8034788 3000100 SCOP2B (2022-06-29)
E [auth F]SCOP2B SuperfamilyRibonuclease PH domain 2-like 8034789 3000346 SCOP2B (2022-06-29)
F [auth G]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8034792 3000100 SCOP2B (2022-06-29)
F [auth G]SCOP2B SuperfamilyRibonuclease PH domain 2-like 8034794 3000346 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyNucleic acid-binding proteins 8034795 3000135 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyEukaryotic type KH-domain (KH-domain type I) 8034800 3001023 SCOP2B (2022-06-29)
H [auth I]SCOP2B SuperfamilyRibosomal L27 protein-like 8034803 3000539 SCOP2B (2022-06-29)
H [auth I]SCOP2B SuperfamilyEukaryotic type KH-domain (KH-domain type I) 8034806 3001023 SCOP2B (2022-06-29)
H [auth I]SCOP2B SuperfamilyNucleic acid-binding proteins 8034799 3000135 SCOP2B (2022-06-29)
O [auth SA]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8052791 3001397 SCOP2B (2022-06-29)
P [auth SB]SCOP2B SuperfamilyRibosomal S3Ae-like 8053212 3002166 SCOP2B (2022-06-29)
Q [auth SD]SCOP2B SuperfamilyProkaryotic type KH domain (KH-domain type II) 8043545 3001043 SCOP2B (2022-06-29)
R [auth SE]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8052757 3000334 SCOP2B (2022-06-29)
R [auth SE]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8052755 3001473 SCOP2B (2022-06-29)
R [auth SE]SCOP2B SuperfamilyNucleic acid-binding proteins 8052756 3000135 SCOP2B (2022-06-29)
S [auth SF]SCOP2B SuperfamilyRibosomal protein S7 8066003 3000799 SCOP2B (2022-06-29)
V [auth SK]SCOP2B SuperfamilyWinged helix DNA-binding domain 8055714 3000034 SCOP2B (2022-06-29)
W [auth SL]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like 8052715 3002138 SCOP2B (2022-06-29)
W [auth SL]SCOP2B SuperfamilyNucleic acid-binding proteins 8052717 3000135 SCOP2B (2022-06-29)
Y [auth SQ]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082685 3000100 SCOP2B (2022-06-29)
BA [auth ST]SCOP2B SuperfamilyWinged helix DNA-binding domain 8089318 3000034 SCOP2B (2022-06-29)
CA [auth SU]SCOP2B SuperfamilyRibosomal protein S10 8098806 3001336 SCOP2B (2022-06-29)
DA [auth SV]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8053139 3000068 SCOP2B (2022-06-29)
FA [auth Sa]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8053143 3000068 SCOP2B (2022-06-29)
HA [auth Sd]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052572 3000068 SCOP2B (2022-06-29)
LA [auth SG]SCOP2B SuperfamilyGS N-terminal domain-like 8053171 3000408 SCOP2B (2022-06-29)
NA [auth SM]SCOP2B SuperfamilyL30e-like 8063978 3001739 SCOP2B (2022-06-29)
OA [auth SN]SCOP2B SuperfamilyHomeodomain-like 8052958 3000001 SCOP2B (2022-06-29)
OA [auth SN]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8052959 3001284 SCOP2B (2022-06-29)
PA [auth SO]SCOP2B SuperfamilyTranslational machinery components 8098844 3000571 SCOP2B (2022-06-29)
QA [auth SW]SCOP2B SuperfamilyRibosomal protein S8 8095469 3000709 SCOP2B (2022-06-29)
UA [auth Se]SCOP2B SuperfamilyRibosomal protein S30e-like 8053453 3002190 SCOP2B (2022-06-29)
ZA [auth LB]SCOP2B SuperfamilyTranslational proteins 8078351 3000811 SCOP2B (2022-06-29)
AB [auth LC]SCOP2B SuperfamilyRibosomal protein L4 8052832 3001146 SCOP2B (2022-06-29)
AB [auth LC]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like 8052831 3002143 SCOP2B (2022-06-29)
BB [auth LD]SCOP2B SuperfamilyTranslational machinery components 8052887 3000571 SCOP2B (2022-06-29)
CB [auth LE]SCOP2B SuperfamilyRibosomal protein L6e, N-terminal domain 8053099 3002160 SCOP2B (2022-06-29)
CB [auth LE]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053100 3000334 SCOP2B (2022-06-29)
DB [auth LF]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8052923 3001378 SCOP2B (2022-06-29)
DB [auth LF]SCOP2B SuperfamilyRibosomal L30p/L7e protein, N-terminal domain-lke 8052922 3002152 SCOP2B (2022-06-29)
FB [auth LH]SCOP2B SuperfamilyRibosomal protein L6 8033688 3000724 SCOP2B (2022-06-29)
GB [auth LI]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8100400 3000884 SCOP2B (2022-06-29)
HB [auth LJ]SCOP2B SuperfamilyRL5-like 8073892 3001709 SCOP2B (2022-06-29)
KB [auth LN]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8098812 3000210 SCOP2B (2022-06-29)
NB [auth LQ]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8095977 3001045 SCOP2B (2022-06-29)
RB [auth LU]SCOP2B Superfamily60S Ribosomal protein L22e 8053060 3002158 SCOP2B (2022-06-29)
SB [auth LV]SCOP2B Superfamily50S Ribosomal protein L14-like 8072050 3000433 SCOP2B (2022-06-29)
UB [auth LX]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8095967 3000210 SCOP2B (2022-06-29)
WB [auth LZ]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053050 3000334 SCOP2B (2022-06-29)
YB [auth Lb]SCOP2B SuperfamilyRibosomal protein L29e 8053036 3002157 SCOP2B (2022-06-29)
ZB [auth Lc]SCOP2B SuperfamilyL30e-like 8077491 3001739 SCOP2B (2022-06-29)
CC [auth Lf]SCOP2B SuperfamilyTranslational proteins 8087455 3000811 SCOP2B (2022-06-29)
DC [auth Lg]SCOP2B SuperfamilyRibosomal protein L34e-like 8053540 3002203 SCOP2B (2022-06-29)
FC [auth Li]SCOP2B SuperfamilyRibosomal protein L36e 8053120 3002161 SCOP2B (2022-06-29)
HC [auth Lk]SCOP2B SuperfamilyRibosomal L38e protein-like 8053567 3002206 SCOP2B (2022-06-29)
IC [auth Ll]SCOP2B SuperfamilyRibosomal protein L39e 8095603 3001756 SCOP2B (2022-06-29)
MC [auth Lp]SCOP2B SuperfamilyZn-binding ribosomal proteins 8101551 3001320 SCOP2B (2022-06-29)
J [auth K]SCOP2B SuperfamilyRibonuclease PH domain 2-like 8034793 3000346 SCOP2B (2022-06-29)
J [auth K]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8034791 3000100 SCOP2B (2022-06-29)
B [auth L]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8034796 3000100 SCOP2B (2022-06-29)
B [auth L]SCOP2B SuperfamilyRibonuclease PH domain 2-like 8034798 3000346 SCOP2B (2022-06-29)
U [auth SI]SCOP2B Superfamily50S Ribosomal protein L14-like 8053077 3000433 SCOP2B (2022-06-29)
AA [auth SS]SCOP2B SuperfamilyS13-like H2TH domain 8101555 3000053 SCOP2B (2022-06-29)
GA [auth Sc]SCOP2B SuperfamilyNucleic acid-binding proteins 8063426 3000135 SCOP2B (2022-06-29)
D [auth O]SCOP2B SuperfamilyRibonuclease PH domain 2-like 8034786 3000346 SCOP2B (2022-06-29)
D [auth O]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8034785 3000100 SCOP2B (2022-06-29)
SA [auth SZ]SCOP2B SuperfamilyWinged helix DNA-binding domain 8090992 3000034 SCOP2B (2022-06-29)
IB [auth LL]SCOP2B SuperfamilyRibosomal protein L13e-like 8053155 3002162 SCOP2B (2022-06-29)
MB [auth LP]SCOP2B SuperfamilyRibosomal protein L22 8076704 3001078 SCOP2B (2022-06-29)
VB [auth LY]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8076756 3000334 SCOP2B (2022-06-29)
XB [auth La]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8077123 3001045 SCOP2B (2022-06-29)
I [auth J]SCOP2B SuperfamilyNucleic acid-binding proteins 8034807 3000135 SCOP2B (2022-06-29)
I [auth J]SCOP2B SuperfamilyRibosomal L27 protein-like 8034810 3000539 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF08148DSHCT (NUC185) domain (DSHCT)DSHCT (NUC185) domainThis C terminal domain is found in DOB1/SK12/helY-like DEAD box helicases [1]. Domain
PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
PF00271Helicase conserved C-terminal domain (Helicase_C)Helicase conserved C-terminal domainThe Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Domain
PF21408Exosome RNA helicase MTR4-like, stalk (MTR4-like_stalk)Exosome RNA helicase MTR4-like, stalkExosome RNA helicase MTR4 is a conserved RNA helicase that functions together with the nuclear exosome and it is involved in processing of structured RNAs, including snRNAs and snoRNAs. It also plays a role in nuclear RNA surveillance pathways involv ...Exosome RNA helicase MTR4 is a conserved RNA helicase that functions together with the nuclear exosome and it is involved in processing of structured RNAs, including snRNAs and snoRNAs. It also plays a role in nuclear RNA surveillance pathways involving the so-called TRAMP complex [1,2]. It contains an arch domain, required for proper 5.8S rRNA processing, and appears to function independently of canonical helicase activity [3]. The arch domain comprises an helical stalk/elbow that flanks a KOW module which adopts a beta-barrel fold. This entry represents the helical stalk found at the N-terminal of KOW beta-barrel from MTR4 [1-3]. This entry also includes Ski2-like helicases which have an overall similar structure to MTR4 proteins. However, Ski2 from yeast does not have the KOW motif and the beta-barrel is tightly packed against the helical stalk [3].
Domain
PF13234Mtr4-like, beta-barrel domain (MTR4_beta-barrel)Mtr4-like, beta-barrel domainExosome RNA helicase Mtr4 is a essential RNA helicase, and is an exosome-activating cofactor. It functions together with the nuclear exosome being involved in processing of structured RNAs, including snRNAs and snoRNAs. It also plays a role in nuclea ...Exosome RNA helicase Mtr4 is a essential RNA helicase, and is an exosome-activating cofactor. It functions together with the nuclear exosome being involved in processing of structured RNAs, including snRNAs and snoRNAs. It also plays a role in nuclear RNA surveillance pathways involving the so-called TRAMP complex [1,2,3]. It contains an arch domain, required for proper 5.8S rRNA processing, and appears to function independently of canonical helicase activity [3]. The arch domain comprises an helical stalk/elbow that flanks a KOW module which adopts a beta-barrel fold. This entry represents the beta-barrel of MTR4 and related Ski2-like helicases. Ski2 from yeast has an overall similar structure to MTR4 proteins. However, it does not have the KOW motif [4] and it is not included in this entry.
Domain
C [auth N]PF037253' exoribonuclease family, domain 2 (RNase_PH_C)3' exoribonuclease family, domain 2This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ...This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria.
Domain
C [auth N]PF011383' exoribonuclease family, domain 1 (RNase_PH)3' exoribonuclease family, domain 1This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ...This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria.
Domain
E [auth F]PF037253' exoribonuclease family, domain 2 (RNase_PH_C)3' exoribonuclease family, domain 2This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ...This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria.
Domain
E [auth F]PF011383' exoribonuclease family, domain 1 (RNase_PH)3' exoribonuclease family, domain 1This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ...This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria.
Domain
F [auth G]PF011383' exoribonuclease family, domain 1 (RNase_PH)3' exoribonuclease family, domain 1This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ...This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria.
Domain
G [auth H]PF21262Exosome complex component RRP40, S1 domain (RRP40_S1)Exosome complex component RRP40, S1 domainRRP40 is a non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. It consists of a N-terminal beta-sandwich hybrid domain (Pfam:P ...RRP40 is a non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. It consists of a N-terminal beta-sandwich hybrid domain (Pfam:PF21261), a central S1 domain and a C-terminal KH domain (Pfam:PF15985). This entry represents the S1 RNA binding domain, which has an OB fold [1-3].
Domain
G [auth H]PF21261Mammalian exosome complex component RRP40, N-terminal (RRP40_N_mamm)Mammalian exosome complex component RRP40, N-terminalExosome complex component RRP40 is a non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. It consists of a N-terminal beta-san ...Exosome complex component RRP40 is a non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. It consists of a N-terminal beta-sandwich hybrid domain, a central S1 domain and a C-terminal KH domain (Pfam:PF15985). This entry represents the N-terminal domain of mammalian RRP40 [1-3].
Domain
G [auth H]PF15985KH domain (KH_6)KH domainKH motifs bind RNA in vitro. Auto-antibodies to Nova, a KH domain protein, cause para-neoplastic opsoclonus ataxia. Domain
H [auth I]PF21266RRP4, S1 domain (RRP4_S1)RRP4, S1 domainExosome complex component RRP4 is a non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. It consists of a N-terminal beta-sandw ...Exosome complex component RRP4 is a non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. It consists of a N-terminal beta-sandwich hybrid domain (Pfam:PF14382), a central S1 domain and a C-terminal KH domain (Pfam:PF15985). This entry represents the S1 RNA binding domain, which has an OB fold [1,2].
Domain
H [auth I]PF14382Exosome complex exonuclease RRP4 N-terminal region (ECR1_N)Exosome complex exonuclease RRP4 N-terminal regionECR1_N is an N-terminal region of the exosome complex exonuclease RRP proteins. It is a G-rich domain which structurally is a rudimentary single hybrid fold with a permuted topology. Domain
H [auth I]PF15985KH domain (KH_6)KH domainKH motifs bind RNA in vitro. Auto-antibodies to Nova, a KH domain protein, cause para-neoplastic opsoclonus ataxia. Domain
L [auth M]PF17849Dis3-like cold-shock domain 2 (CSD2) (OB_Dis3)Dis3-like cold-shock domain 2 (CSD2)This domain has an OB fold and is found in the Dis3l2 protein [1]. This domain along with CSD1 binds to RNA. Domain
L [auth M]PF17215S1 domain (Rrp44_S1)S1 domainThis domain corresponds to the S1 domain found at the C-terminus of ribonucleases such as yeast Rrp44 [1]. Domain
L [auth M]PF17216Rrp44-like cold shock domain (Rrp44_CSD1)Rrp44-like cold shock domainDomain
L [auth M]PF00773RNB domain (RNB)RNB domainThis domain is the catalytic domain of ribonuclease II [1]. Domain
O [auth SA]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
O [auth SA]PF1612240S ribosomal protein SA C-terminus (40S_SA_C)40S ribosomal protein SA C-terminus- Family
P [auth SB]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
Q [auth SD]PF07650KH domain (KH_2)KH domainDomain
Q [auth SD]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
Q [auth SD]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
R [auth SE]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
R [auth SE]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
R [auth SE]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. Domain
R [auth SE]PF00467KOW motif (KOW)KOW motif- Family
S [auth SF]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
S [auth SF]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
V [auth SK]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. Domain
W [auth SL]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
W [auth SL]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
X [auth SP]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
Y [auth SQ]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
BA [auth ST]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
CA [auth SU]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
DA [auth SV]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
KA [auth SC]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
KA [auth SC]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
KA [auth SC]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
LA [auth SG]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
LA [auth SG]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
MA [auth SJ]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
MA [auth SJ]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
NA [auth SM]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
OA [auth SN]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
PA [auth SO]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
QA [auth SW]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
RA [auth SY]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
YA [auth LA]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
YA [auth LA]PF00181Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N)Ribosomal Proteins L2, RNA binding N-terminal domainDomain
YA [auth LA]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
ZA [auth LB]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
AB [auth LC]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins. Domain
AB [auth LC]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
AB [auth LC]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
BB [auth LD]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
BB [auth LD]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
BB [auth LD]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins. Domain
CB [auth LE]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
CB [auth LE]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
DB [auth LF]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
DB [auth LF]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35AeDomain
EB [auth LG]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
FB [auth LH]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
FB [auth LH]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
GB [auth LI]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
GB [auth LI]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
HB [auth LJ]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
HB [auth LJ]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
HB [auth LJ]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
KB [auth LN]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
KB [auth LN]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
NB [auth LQ]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
PB [auth LS]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain
SB [auth LV]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
TB [auth LW]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24eDomain
UB [auth LX]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
WB [auth LZ]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
WB [auth LZ]PF00467KOW motif (KOW)KOW motif- Family
J [auth K]PF037253' exoribonuclease family, domain 2 (RNase_PH_C)3' exoribonuclease family, domain 2This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ...This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria.
Domain
J [auth K]PF011383' exoribonuclease family, domain 1 (RNase_PH)3' exoribonuclease family, domain 1This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ...This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria.
Domain
B [auth L]PF037253' exoribonuclease family, domain 2 (RNase_PH_C)3' exoribonuclease family, domain 2This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ...This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria.
Domain
B [auth L]PF011383' exoribonuclease family, domain 1 (RNase_PH)3' exoribonuclease family, domain 1This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ...This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria.
Domain
T [auth SH]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
U [auth SI]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
Z [auth SR]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
AA [auth SS]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
EA [auth SX]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
D [auth O]PF037253' exoribonuclease family, domain 2 (RNase_PH_C)3' exoribonuclease family, domain 2This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ...This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria.
Domain
D [auth O]PF011383' exoribonuclease family, domain 1 (RNase_PH)3' exoribonuclease family, domain 1This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of ...This family includes 3'-5' exoribonucleases. Ribonuclease PH contains a single copy of this domain, and removes nucleotide residues following the -CCA terminus of tRNA. Polyribonucleotide nucleotidyltransferase (PNPase) contains two tandem copies of the domain. PNPase is involved in mRNA degradation in a 3'-5' direction. The exosome is a 3'-5' exoribonuclease complex that is required for 3' processing of the 5.8S rRNA. Three of its five protein components, Swiss:P46948 Swiss:Q12277 and Swiss:P25359 contain a copy of this domain [1]. Swiss:Q10205, a hypothetical protein from S. pombe appears to belong to an uncharacterised subfamily. This subfamily is found in both eukaryotes and archaebacteria.
Domain
IB [auth LL]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
IB [auth LL]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
JB [auth LM]PF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e familyBovine L40 has been identified as a secondary RNA binding protein [1]. L40 is fused to a ubiquitin protein [2]. Domain
JB [auth LM]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
LB [auth LO]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
LB [auth LO]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
MB [auth LP]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
MB [auth LP]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
OB [auth LR]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
OB [auth LR]PF01280Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e)Ribosomal protein L19e, N-terminal domainThis domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. Domain
VB [auth LY]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
VB [auth LY]PF00467KOW motif (KOW)KOW motif- Family
I [auth J]PF14382Exosome complex exonuclease RRP4 N-terminal region (ECR1_N)Exosome complex exonuclease RRP4 N-terminal regionECR1_N is an N-terminal region of the exosome complex exonuclease RRP proteins. It is a G-rich domain which structurally is a rudimentary single hybrid fold with a permuted topology. Domain
I [auth J]PF10447Exosome component EXOSC1/CSL4 (EXOSC1)Exosome component EXOSC1/CSL4This family of proteins are components of the exosome 3'->5' exoribonuclease complex. The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions [1]. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Helicase SKI2W
C [auth N]Exosome complex component RRP43
E [auth F]Exosome complex component RRP42
F [auth G]Exosome complex component MTR3
G [auth H]Exosome complex component RRP40,Exosome complex component MTR3
H [auth I]Exosome complex component RRP4
L [auth M]DIS3-like exonuclease 1
O [auth SA]40S ribosomal protein SA
P [auth SB]40S ribosomal protein S3a
Q [auth SD]40S ribosomal protein S3
R [auth SE]40S ribosomal protein S4, X isoform
S [auth SF]40S ribosomal protein S5
V [auth SK]40S ribosomal protein S10
W [auth SL]40S ribosomal protein S11
X [auth SP]40S ribosomal protein S15
Y [auth SQ]40S ribosomal protein S16
BA [auth ST]40S ribosomal protein S19
CA [auth SU]40S ribosomal protein S20
DA [auth SV]40S ribosomal protein S21
FA [auth Sa]40S ribosomal protein S26
HA [auth Sd]40S ribosomal protein S29
IA [auth Sf]Ubiquitin
JA [auth Sg]Receptor of activated protein C kinase 1
KA [auth SC]40S ribosomal protein S2
LA [auth SG]40S ribosomal protein S6
MA [auth SJ]40S ribosomal protein S9
NA [auth SM]40S ribosomal protein S12
OA [auth SN]40S ribosomal protein S13
PA [auth SO]40S ribosomal protein S14
QA [auth SW]40S ribosomal protein S15a
RA [auth SY]40S ribosomal protein S24
UA [auth Se]40S ribosomal protein S30
VA [auth L5]28S ribosomal RNA---
WA [auth L7]5S ribosomal RNA---
YA [auth LA]60S ribosomal protein L8
ZA [auth LB]60S ribosomal protein L3
AB [auth LC]60S ribosomal protein L4
BB [auth LD]60S ribosomal protein L5
CB [auth LE]Large ribosomal subunit protein eL6
DB [auth LF]Large ribosomal subunit protein uL30
EB [auth LG]60S ribosomal protein L7a
FB [auth LH]60S ribosomal protein L9
GB [auth LI]Ribosomal protein uL16-like
HB [auth LJ]60S ribosomal protein L11
KB [auth LN]60S ribosomal protein L15
NB [auth LQ]60S ribosomal protein L18
PB [auth LS]60S ribosomal protein L18a
QB [auth LT]60S ribosomal protein L21
RB [auth LU]60S ribosomal protein L22
SB [auth LV]60S ribosomal protein L23
TB [auth LW]60S ribosomal protein L24
UB [auth LX]60S ribosomal protein L23a
WB [auth LZ]60S ribosomal protein L27
YB [auth Lb]60S ribosomal protein L29
ZB [auth Lc]60S ribosomal protein L30
CC [auth Lf]60S ribosomal protein L35a
DC [auth Lg]60S ribosomal protein L34
FC [auth Li]60S ribosomal protein L36
HC [auth Lk]60S ribosomal protein L38
IC [auth Ll]60S ribosomal protein L39
JC [auth Lm]Ubiquitin-60S ribosomal protein L40
KC [auth Ln]60S ribosomal protein L41
LC [auth Lo]60S ribosomal protein L36a
MC [auth Lp]60S ribosomal protein L37a
NC [auth Lr]60S ribosomal protein L28
J [auth K]Exosome complex component RRP45
K [auth E]Isoform 2 of HBS1-like protein
M [auth X]CrPV-IRES RNA---
N [auth S2]18S ribosomal RNA---
B [auth L]Exosome complex component RRP41
T [auth SH]40S ribosomal protein S7
U [auth SI]40S ribosomal protein S8
Z [auth SR]40S ribosomal protein S17
AA [auth SS]40S ribosomal protein S18
EA [auth SX]40S ribosomal protein S23
GA [auth Sc]40S ribosomal protein S28
D [auth O]Exosome complex component RRP46
SA [auth SZ]40S ribosomal protein S25
TA [auth Sb]40S ribosomal protein S27
XA [auth L8]5.8S ribosomal RNA---
IB [auth LL]60S ribosomal protein L13
JB [auth LM]60S ribosomal protein L14
LB [auth LO]60S ribosomal protein L13a
MB [auth LP]60S ribosomal protein L17
OB [auth LR]60S ribosomal protein L19
VB [auth LY]60S ribosomal protein L26
XB [auth La]60S ribosomal protein L27a
AC [auth Ld]60S ribosomal protein L31
BC [auth Le]60S ribosomal protein L32
EC [auth Lh]60S ribosomal protein L35
GC [auth Lj]60S ribosomal protein L37
I [auth J]Exosome complex component CSL4

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR048392Exosome RNA helicase MTR4-like, stalkDomain
IPR050699RNA/DNA HelicaseFamily
IPR012961ATP-dependent RNA helicase Ski2/MTR4, C-terminalDomain
IPR001650Helicase, C-terminal domain-likeDomain
IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
IPR025696Exosome RNA helicase MTR4-like, beta-barrel domainDomain
IPR040801Ski2, N-terminal domainDomain
IPR011545DEAD/DEAH-box helicase domainDomain
IPR016438ATP-dependent RNA helicase SKI2-likeFamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth N]IPR027408PNPase/RNase PH domain superfamilyHomologous Superfamily
C [auth N]IPR033196Exosome complex component Rrp43Family
C [auth N]IPR050590Exosome complex component Rrp42 subfamilyFamily
C [auth N]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
C [auth N]IPR015847Exoribonuclease, phosphorolytic domain 2Domain
C [auth N]IPR001247Exoribonuclease, phosphorolytic domain 1Domain
C [auth N]IPR036345Exoribonuclease, PH domain 2 superfamilyHomologous Superfamily
E [auth F]IPR027408PNPase/RNase PH domain superfamilyHomologous Superfamily
E [auth F]IPR050590Exosome complex component Rrp42 subfamilyFamily
E [auth F]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
E [auth F]IPR015847Exoribonuclease, phosphorolytic domain 2Domain
E [auth F]IPR001247Exoribonuclease, phosphorolytic domain 1Domain
E [auth F]IPR036345Exoribonuclease, PH domain 2 superfamilyHomologous Superfamily
F [auth G]IPR050080Ribonuclease PHFamily
F [auth G]IPR027408PNPase/RNase PH domain superfamilyHomologous Superfamily
F [auth G]IPR001247Exoribonuclease, phosphorolytic domain 1Domain
F [auth G]IPR036345Exoribonuclease, PH domain 2 superfamilyHomologous Superfamily
F [auth G]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
G [auth H]IPR050080Ribonuclease PHFamily
G [auth H]IPR027408PNPase/RNase PH domain superfamilyHomologous Superfamily
G [auth H]IPR001247Exoribonuclease, phosphorolytic domain 1Domain
G [auth H]IPR036345Exoribonuclease, PH domain 2 superfamilyHomologous Superfamily
G [auth H]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
G [auth H]IPR048541Exosome complex component RRP40, N-terminal domainDomain
G [auth H]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
G [auth H]IPR026699Exosome complex RNA-binding protein 1/RRP40/RRP4Family
G [auth H]IPR049469Exosome complex component RRP40, type I KH domainDomain
G [auth H]IPR037319Rrp40, S1 domainDomain
G [auth H]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
G [auth H]IPR004088K Homology domain, type 1Domain
H [auth I]IPR048565RRP4, S1 domainDomain
H [auth I]IPR036612K Homology domain, type 1 superfamilyHomologous Superfamily
H [auth I]IPR025721Exosome complex component, N-terminal domainDomain
H [auth I]IPR026699Exosome complex RNA-binding protein 1/RRP40/RRP4Family
H [auth I]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
H [auth I]IPR004088K Homology domain, type 1Domain
L [auth M]IPR050180RNR RibonucleaseFamily
L [auth M]IPR041505Dis3-like cold-shock domain 2Domain
L [auth M]IPR022966Ribonuclease II/R, conserved siteConserved Site
L [auth M]IPR033770Exosome complex exonuclease RRP44, S1 domainDomain
L [auth M]IPR033771Rrp44-like cold shock domainDomain
L [auth M]IPR001900Ribonuclease II/RDomain
L [auth M]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
O [auth SA]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
O [auth SA]IPR001865Small ribosomal subunit protein uS2Family
O [auth SA]IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
O [auth SA]IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
O [auth SA]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
O [auth SA]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
O [auth SA]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
P [auth SB]IPR001593Small ribosomal subunit protein eS1Family
P [auth SB]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
P [auth SB]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
Q [auth SD]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
Q [auth SD]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
Q [auth SD]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
Q [auth SD]IPR004044K Homology domain, type 2Domain
Q [auth SD]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
Q [auth SD]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
Q [auth SD]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
R [auth SE]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
R [auth SE]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
R [auth SE]IPR013845Small ribosomal subunit protein eS4, central regionDomain
R [auth SE]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
R [auth SE]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
R [auth SE]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
R [auth SE]IPR002942RNA-binding S4 domainDomain
R [auth SE]IPR000876Small ribosomal subunit protein eS4Family
R [auth SE]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
R [auth SE]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
R [auth SE]IPR005824KOWDomain
S [auth SF]IPR023798Small ribosomal subunit protein uS7 domainDomain
S [auth SF]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
S [auth SF]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
S [auth SF]IPR000235Small ribosomal subunit protein uS7Family
S [auth SF]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
V [auth SK]IPR037447Small ribosomal subunit protein eS10Family
V [auth SK]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
V [auth SK]IPR005326Plectin/eS10, N-terminalDomain
W [auth SL]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
W [auth SL]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
W [auth SL]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
W [auth SL]IPR000266Small ribosomal subunit protein uS17Family
W [auth SL]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
X [auth SP]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
X [auth SP]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
X [auth SP]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
X [auth SP]IPR002222Small ribosomal subunit protein uS19Family
Y [auth SQ]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
Y [auth SQ]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
Y [auth SQ]IPR000754Small ribosomal subunit protein uS9Family
Y [auth SQ]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
BA [auth ST]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
BA [auth ST]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
BA [auth ST]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
BA [auth ST]IPR001266Small ribosomal subunit protein eS19Family
CA [auth SU]IPR027486Small ribosomal subunit protein uS10 domainDomain
CA [auth SU]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
CA [auth SU]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
CA [auth SU]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
CA [auth SU]IPR001848Small ribosomal subunit protein uS10Family
DA [auth SV]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
DA [auth SV]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
DA [auth SV]IPR001931Small ribosomal subunit protein eS21Family
FA [auth Sa]IPR047864Ribosomal protein eS26, conserved siteConserved Site
FA [auth Sa]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
FA [auth Sa]IPR000892Small ribosomal subunit protein eS26Family
HA [auth Sd]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
HA [auth Sd]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
HA [auth Sd]IPR001209Small ribosomal subunit protein uS14Family
HA [auth Sd]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
IA [auth Sf]IPR019954Ubiquitin conserved siteConserved Site
IA [auth Sf]IPR050158Ubiquitin and ubiquitin-likeFamily
IA [auth Sf]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
IA [auth Sf]IPR000626Ubiquitin-like domainDomain
IA [auth Sf]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
IA [auth Sf]IPR002906Small ribosomal subunit protein eS31Domain
IA [auth Sf]IPR019956Ubiquitin domainDomain
IA [auth Sf]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
JA [auth Sg]IPR019775WD40 repeat, conserved siteConserved Site
JA [auth Sg]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
JA [auth Sg]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
JA [auth Sg]IPR045223Small ribosomal subunit protein RACK1-likeFamily
JA [auth Sg]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
JA [auth Sg]IPR001680WD40 repeatRepeat
KA [auth SC]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
KA [auth SC]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
KA [auth SC]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
KA [auth SC]IPR000851Small ribosomal subunit protein uS5Family
KA [auth SC]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
KA [auth SC]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
KA [auth SC]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
LA [auth SG]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
LA [auth SG]IPR001377Small ribosomal subunit protein eS6Family
LA [auth SG]IPR014401Small ribosomal subunit protein eS6-likeFamily
MA [auth SJ]IPR002942RNA-binding S4 domainDomain
MA [auth SJ]IPR022801Small ribosomal subunit protein uS4Family
MA [auth SJ]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
MA [auth SJ]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
MA [auth SJ]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
MA [auth SJ]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
NA [auth SM]IPR000530Small ribosomal subunit protein eS12Family
NA [auth SM]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
NA [auth SM]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
NA [auth SM]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
OA [auth SN]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
OA [auth SN]IPR000589Small ribosomal subunit protein uS15Family
OA [auth SN]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
OA [auth SN]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
PA [auth SO]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
PA [auth SO]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
PA [auth SO]IPR001971Small ribosomal subunit protein uS11Family
QA [auth SW]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
QA [auth SW]IPR000630Small ribosomal subunit protein uS8Family
QA [auth SW]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
RA [auth SY]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
RA [auth SY]IPR001976Small ribosomal subunit protein eS24Family
RA [auth SY]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
RA [auth SY]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
UA [auth Se]IPR019954Ubiquitin conserved siteConserved Site
UA [auth Se]IPR006846Small ribosomal subunit protein eS30Family
UA [auth Se]IPR039415Ubiquitin-like protein FUBIDomain
UA [auth Se]IPR000626Ubiquitin-like domainDomain
UA [auth Se]IPR019956Ubiquitin domainDomain
UA [auth Se]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
YA [auth LA]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
YA [auth LA]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
YA [auth LA]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
YA [auth LA]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
YA [auth LA]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
YA [auth LA]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
YA [auth LA]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
YA [auth LA]IPR023672Large ribosomal subunit protein uL2, archaeal-eukaryota typeFamily
YA [auth LA]IPR002171Large ribosomal subunit protein uL2Family
ZA [auth LB]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
ZA [auth LB]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
ZA [auth LB]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
ZA [auth LB]IPR000597Large ribosomal subunit protein uL3Family
ZA [auth LB]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
AB [auth LC]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
AB [auth LC]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
AB [auth LC]IPR002136Large ribosomal subunit protein uL4Family
AB [auth LC]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
AB [auth LC]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
BB [auth LD]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
BB [auth LD]IPR005485Large ribosomal subunit protein uL18, eukaryotic/archaealFamily
CB [auth LE]IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
CB [auth LE]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
CB [auth LE]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
CB [auth LE]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
CB [auth LE]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
CB [auth LE]IPR000915Large ribosomal subunit protein eL6Family
DB [auth LF]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
DB [auth LF]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
DB [auth LF]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
DB [auth LF]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
DB [auth LF]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
DB [auth LF]IPR039699Large ribosomal subunit protein uL30Family
DB [auth LF]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
EB [auth LG]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
EB [auth LG]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
EB [auth LG]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
EB [auth LG]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
EB [auth LG]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
EB [auth LG]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
FB [auth LH]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
FB [auth LH]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
FB [auth LH]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
FB [auth LH]IPR000702Large ribosomal subunit protein uL6-likeFamily
GB [auth LI]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
GB [auth LI]IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
GB [auth LI]IPR047873Large ribosomal subunit protein uL16Family
GB [auth LI]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site
GB [auth LI]IPR016180Large ribosomal subunit protein uL16 domainDomain
HB [auth LJ]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
HB [auth LJ]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
HB [auth LJ]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
HB [auth LJ]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
HB [auth LJ]IPR002132Large ribosomal subunit protein uL5Family
KB [auth LN]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
KB [auth LN]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
KB [auth LN]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
KB [auth LN]IPR000439Large ribosomal subunit protein eL15Family
NB [auth LQ]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
NB [auth LQ]IPR000039Large ribosomal subunit protein eL18Family
NB [auth LQ]IPR021131Large ribosomal subunit protein uL15/eL18Domain
NB [auth LQ]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
PB [auth LS]IPR028877Large ribosomal subunit protein eL20Family
PB [auth LS]IPR023573Large ribosomal subunit protein eL20 domainDomain
PB [auth LS]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
QB [auth LT]IPR001147Large ribosomal subunit protein eL21Family
QB [auth LT]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
QB [auth LT]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
QB [auth LT]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
RB [auth LU]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
RB [auth LU]IPR002671Large ribosomal subunit protein eL22Family
SB [auth LV]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
SB [auth LV]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
SB [auth LV]IPR000218Large ribosomal subunit protein uL14Family
TB [auth LW]IPR011017TRASH domainDomain
TB [auth LW]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
TB [auth LW]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
TB [auth LW]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
TB [auth LW]IPR056366Large ribosomal subunit protein eL24Family
UB [auth LX]IPR019985Large ribosomal subunit protein uL23Family
UB [auth LX]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
UB [auth LX]IPR013025Large ribosomal subunit protein uL23-likeFamily
UB [auth LX]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
UB [auth LX]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
UB [auth LX]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
WB [auth LZ]IPR001141Large ribosomal subunit protein eL27Family
WB [auth LZ]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
WB [auth LZ]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
WB [auth LZ]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
WB [auth LZ]IPR005824KOWDomain
WB [auth LZ]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
YB [auth Lb]IPR002673Large ribosomal subunit protein eL29Family
ZB [auth Lc]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
ZB [auth Lc]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
ZB [auth Lc]IPR000231Large ribosomal subunit protein eL30Family
ZB [auth Lc]IPR039109Large ribosomal subunit protein eL30-likeFamily
ZB [auth Lc]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
CC [auth Lf]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
CC [auth Lf]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
CC [auth Lf]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
CC [auth Lf]IPR001780Large ribosomal subunit protein eL33Family
DC [auth Lg]IPR038562Large ribosomal subunit protein eL34, C-terminal domain superfamilyHomologous Superfamily
DC [auth Lg]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
DC [auth Lg]IPR008195Large ribosomal subunit protein eL34Family
FC [auth Li]IPR000509Large ribosomal subunit protein eL36Family
FC [auth Li]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
HC [auth Lk]IPR002675Large ribosomal subunit protein eL38Family
HC [auth Lk]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
IC [auth Ll]IPR000077Large ribosomal subunit protein eL39Family
IC [auth Ll]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
IC [auth Ll]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
JC [auth Lm]IPR019954Ubiquitin conserved siteConserved Site
JC [auth Lm]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
JC [auth Lm]IPR050158Ubiquitin and ubiquitin-likeFamily
JC [auth Lm]IPR000626Ubiquitin-like domainDomain
JC [auth Lm]IPR019956Ubiquitin domainDomain
JC [auth Lm]IPR001975Large ribosomal subunit protein eL40 domainDomain
JC [auth Lm]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
KC [auth Ln]IPR007836Large ribosomal subunit protein eS32Family
LC [auth Lo]IPR000552Large ribosomal subunit protein eL42Family
LC [auth Lo]IPR053708Eukaryotic Ribosomal Large Subunit eL42Homologous Superfamily
LC [auth Lo]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
MC [auth Lp]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
MC [auth Lp]IPR002674Large ribosomal subunit protein eL43Family
MC [auth Lp]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
NC [auth Lr]IPR029004Ribosomal eL28/Mak16Domain
NC [auth Lr]IPR002672Large ribosomal subunit protein eL28Family
J [auth K]IPR033100Exosome complex component RRP45Family
J [auth K]IPR027408PNPase/RNase PH domain superfamilyHomologous Superfamily
J [auth K]IPR050590Exosome complex component Rrp42 subfamilyFamily
J [auth K]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
J [auth K]IPR015847Exoribonuclease, phosphorolytic domain 2Domain
J [auth K]IPR001247Exoribonuclease, phosphorolytic domain 1Domain
J [auth K]IPR036345Exoribonuclease, PH domain 2 superfamilyHomologous Superfamily
K [auth E]IPR050100Translation factor GTPase superfamily membersFamily
K [auth E]IPR000795Translational (tr)-type GTP-binding domainDomain
K [auth E]IPR009001Translation elongation factor EF1A/initiation factor IF2gamma, C-terminalHomologous Superfamily
K [auth E]IPR004161Translation elongation factor EFTu-like, domain 2Domain
K [auth E]IPR054696GTP-eEF1A, C-terminal domainDomain
K [auth E]IPR015033HBS1-like protein, N-terminalDomain
K [auth E]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
K [auth E]IPR037189HBS1-like protein, N-terminal domain superfamilyHomologous Superfamily
K [auth E]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth L]IPR050080Ribonuclease PHFamily
B [auth L]IPR027408PNPase/RNase PH domain superfamilyHomologous Superfamily
B [auth L]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
B [auth L]IPR015847Exoribonuclease, phosphorolytic domain 2Domain
B [auth L]IPR001247Exoribonuclease, phosphorolytic domain 1Domain
B [auth L]IPR036345Exoribonuclease, PH domain 2 superfamilyHomologous Superfamily
T [auth SH]IPR000554Small ribosomal subunit protein eS7Family
T [auth SH]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
U [auth SI]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
U [auth SI]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
U [auth SI]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
U [auth SI]IPR001047Small ribosomal subunit protein eS8Family
Z [auth SR]IPR001210Small ribosomal subunit protein eS17Family
Z [auth SR]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
Z [auth SR]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
AA [auth SS]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
AA [auth SS]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
AA [auth SS]IPR001892Small ribosomal subunit protein uS13Family
AA [auth SS]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
EA [auth SX]IPR006032Small ribosomal subunit protein uS12Family
EA [auth SX]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
EA [auth SX]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
GA [auth Sc]IPR028626Ribosomal protein eS28 conserved siteConserved Site
GA [auth Sc]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
GA [auth Sc]IPR000289Small ribosomal subunit protein eS28Family
D [auth O]IPR050080Ribonuclease PHFamily
D [auth O]IPR027408PNPase/RNase PH domain superfamilyHomologous Superfamily
D [auth O]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
D [auth O]IPR015847Exoribonuclease, phosphorolytic domain 2Domain
D [auth O]IPR001247Exoribonuclease, phosphorolytic domain 1Domain
D [auth O]IPR036345Exoribonuclease, PH domain 2 superfamilyHomologous Superfamily
SA [auth SZ]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
SA [auth SZ]IPR004977Small ribosomal subunit protein eS25Family
TA [auth Sb]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
TA [auth Sb]IPR000592Small ribosomal subunit protein eS27Family
TA [auth Sb]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
IB [auth LL]IPR001380Large ribosomal subunit protein eL13Family
IB [auth LL]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
JB [auth LM]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
JB [auth LM]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
JB [auth LM]IPR039660Large ribosomal subunit protein eL14Family
JB [auth LM]IPR002784Large ribosomal subunit protein eL14 domainDomain
LB [auth LO]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
LB [auth LO]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
LB [auth LO]IPR005822Large ribosomal subunit protein uL13Family
LB [auth LO]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
MB [auth LP]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
MB [auth LP]IPR001063Large ribosomal subunit protein uL22Family
MB [auth LP]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
MB [auth LP]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
OB [auth LR]IPR039547Large ribosomal subunit protein eL19Family
OB [auth LR]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
OB [auth LR]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
OB [auth LR]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
OB [auth LR]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
OB [auth LR]IPR000196Large ribosomal subunit protein eL19 domainDomain
VB [auth LY]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
VB [auth LY]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
VB [auth LY]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
VB [auth LY]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
VB [auth LY]IPR005824KOWDomain
VB [auth LY]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
XB [auth La]IPR027386Ribosomal uL15, N-terminalHomologous Superfamily
XB [auth La]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
XB [auth La]IPR021131Large ribosomal subunit protein uL15/eL18Domain
XB [auth La]IPR030878Large ribosomal subunit protein uL15Family
XB [auth La]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
AC [auth Ld]IPR000054Large ribosomal subunit protein eL31Family
AC [auth Ld]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
AC [auth Ld]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
BC [auth Le]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
BC [auth Le]IPR001515Large ribosomal subunit protein eL32Family
BC [auth Le]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
EC [auth Lh]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
EC [auth Lh]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
EC [auth Lh]IPR001854Large ribosomal subunit protein uL29Family
EC [auth Lh]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
GC [auth Lj]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
GC [auth Lj]IPR001569Large ribosomal subunit protein eL37Family
GC [auth Lj]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
GC [auth Lj]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
I [auth J]IPR003029S1 domainDomain
I [auth J]IPR019495Exosome complex component CSL4, C-terminalDomain
I [auth J]IPR039771Exosome complex component Csl4Family
I [auth J]IPR025721Exosome complex component, N-terminal domainDomain
I [auth J]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosQ15477
C [auth N]PharosQ96B26
E [auth F]PharosQ15024
F [auth G]PharosQ5RKV6
G [auth H]PharosQ9NQT5
H [auth I]PharosQ13868
L [auth M]PharosQ8TF46
O [auth SA]PharosP08865
Q [auth SD]PharosP23396
R [auth SE]PharosP62701
S [auth SF]PharosP46782
V [auth SK]PharosP46783
W [auth SL]PharosP62280
X [auth SP]PharosP62841
Y [auth SQ]PharosP62249
BA [auth ST]PharosP39019
CA [auth SU]PharosP60866
DA [auth SV]PharosP63220
FA [auth Sa]PharosP62854
HA [auth Sd]PharosP62273
IA [auth Sf]PharosP62979
JA [auth Sg]PharosP63244
KA [auth SC]PharosP15880
LA [auth SG]PharosP62753
MA [auth SJ]PharosP46781
NA [auth SM]PharosP25398
OA [auth SN]PharosP62277
PA [auth SO]PharosP62263
QA [auth SW]PharosP62244
RA [auth SY]PharosP62847
UA [auth Se]PharosP62861
ZA [auth LB]PharosP39023
AB [auth LC]PharosP36578
BB [auth LD]PharosP46777
CB [auth LE]PharosQ02878
DB [auth LF]PharosP18124
EB [auth LG]PharosP62424
FB [auth LH]PharosP32969
GB [auth LI]PharosQ96L21
HB [auth LJ]PharosP62913
KB [auth LN]PharosP61313
NB [auth LQ]PharosQ07020
QB [auth LT]PharosP46778
RB [auth LU]PharosP35268
SB [auth LV]PharosP62829
TB [auth LW]PharosP83731
UB [auth LX]PharosP62750
WB [auth LZ]PharosP61353
ZB [auth Lc]PharosP62888
CC [auth Lf]PharosP18077
DC [auth Lg]PharosP49207
FC [auth Li]PharosQ9Y3U8
HC [auth Lk]PharosP63173
JC [auth Lm]PharosP62987
KC [auth Ln]PharosP62945
LC [auth Lo]PharosP83881
MC [auth Lp]PharosP61513
NC [auth Lr]PharosP46779
J [auth K]PharosQ06265
K [auth E]PharosQ9Y450
B [auth L]PharosQ9NPD3
T [auth SH]PharosP62081
U [auth SI]PharosP62241
Z [auth SR]PharosP08708
AA [auth SS]PharosP62269
EA [auth SX]PharosP62266
GA [auth Sc]PharosP62857
D [auth O]PharosQ9NQT4
SA [auth SZ]PharosP62851
TA [auth Sb]PharosP42677
IB [auth LL]PharosP26373
JB [auth LM]PharosP50914
LB [auth LO]PharosP40429
MB [auth LP]PharosP18621
OB [auth LR]PharosP84098
VB [auth LY]PharosP61254
XB [auth La]PharosP46776
AC [auth Ld]PharosP62899
BC [auth Le]PharosP62910
EC [auth Lh]PharosP42766
GC [auth Lj]PharosP61927
I [auth J]PharosQ9Y3B2