9G8R | pdb_00009g8r

human SKI7-SKI238 complex in the open state


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth B]PF13181Tetratricopeptide repeat (TPR_8)Tetratricopeptide repeat- Repeat
A [auth B]PF13432Tetratricopeptide repeat (TPR_16)Tetratricopeptide repeat- Repeat
B [auth C],
C [auth D]
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
E [auth A]PF17911Ski2 N-terminal region (Ski2_N)Ski2 N-terminal regionThis region is the N-terminal extended region found in the Ski2 protein. The Ski complex is a conserved multiprotein assembly required for the cytoplasmic functions of the exosome, including RNA turnover, surveillance, and interference [1]. Ski2, Ski ...This region is the N-terminal extended region found in the Ski2 protein. The Ski complex is a conserved multiprotein assembly required for the cytoplasmic functions of the exosome, including RNA turnover, surveillance, and interference [1]. Ski2, Ski3, and Ski8 assemble in a tetramer with 1:1:2 stoichiometry.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth B]Superkiller complex protein 3-
B [auth C],
C [auth D]
WD repeat-containing protein 61-
D [auth E]Isoform 2 of HBS1-like protein
E [auth A]Superkiller complex protein 2

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth B]IPR039226Ski3/TTC37Family
A [auth B]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
A [auth B]IPR019734Tetratricopeptide repeatRepeat
B [auth C],
C [auth D]
IPR019775WD40 repeat, conserved siteConserved Site
B [auth C],
C [auth D]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
B [auth C],
C [auth D]
IPR051510Superkiller complex protein 8Family
B [auth C],
C [auth D]
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
B [auth C],
C [auth D]
IPR001680WD40 repeatRepeat
B [auth C],
C [auth D]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
D [auth E]IPR050100Translation factor GTPase superfamily membersFamily
D [auth E]IPR000795Translational (tr)-type GTP-binding domainDomain
D [auth E]IPR009001Translation elongation factor EF1A/initiation factor IF2gamma, C-terminalHomologous Superfamily
D [auth E]IPR004161Translation elongation factor EFTu-like, domain 2Domain
D [auth E]IPR054696GTP-eEF1A, C-terminal domainDomain
D [auth E]IPR015033HBS1-like protein, N-terminalDomain
D [auth E]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
D [auth E]IPR037189HBS1-like protein, N-terminal domain superfamilyHomologous Superfamily
D [auth E]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E [auth A]IPR048392Exosome RNA helicase MTR4-like, stalkDomain
E [auth A]IPR050699RNA/DNA HelicaseFamily
E [auth A]IPR012961ATP-dependent RNA helicase Ski2/MTR4, C-terminalDomain
E [auth A]IPR001650Helicase, C-terminal domain-likeDomain
E [auth A]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
E [auth A]IPR025696Exosome RNA helicase MTR4-like, beta-barrel domainDomain
E [auth A]IPR040801Ski2, N-terminal domainDomain
E [auth A]IPR011545DEAD/DEAH-box helicase domainDomain
E [auth A]IPR016438ATP-dependent RNA helicase SKI2-likeFamily
E [auth A]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth B]PharosQ6PGP7
B [auth C],
C [auth D]
PharosQ9GZS3
D [auth E]PharosQ9Y450
E [auth A]PharosQ15477