9GC0 | pdb_00009gc0

3'-lobe of the substrate-bound U11 snRNP


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
H [auth n]SCOP2B SuperfamilySm-like ribonucleoproteins 8063468 3000419 SCOP2B (2022-06-29)
G [auth m]SCOP2B SuperfamilySm-like ribonucleoproteins 8063452 3000419 SCOP2B (2022-06-29)
F [auth l]SCOP2B SuperfamilySm-like ribonucleoproteins 8063476 3000419 SCOP2B (2022-06-29)
E [auth k]SCOP2B SuperfamilySm-like ribonucleoproteins 8041747 3000419 SCOP2B (2022-06-29)
D [auth j]SCOP2B SuperfamilySm-like ribonucleoproteins 8041751 3000419 SCOP2B (2022-06-29)
C [auth h]SCOP2B SuperfamilySm-like ribonucleoproteins 8041748 3000419 SCOP2B (2022-06-29)
K [auth i]SCOP2B SuperfamilySm-like ribonucleoproteins 8041749 3000419 SCOP2B (2022-06-29)
J [auth F]SCOP2B Superfamilybeta-beta-alpha zinc fingers 8037837 3001077 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
J [auth F]PF05253U11-48K-like CHHC zinc finger (zf-U11-48K)U11-48K-like CHHC zinc fingerThis zinc binding domain [1] has four conserved zinc chelating residues in a CHHC pattern. This domain is predicted to have an RNA-binding function [1]. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth Q]U11 snRNA---
H [auth n]Small nuclear ribonucleoprotein G
G [auth m]Small nuclear ribonucleoprotein F
F [auth l]Small nuclear ribonucleoprotein E
E [auth k]Small nuclear ribonucleoprotein-associated proteins B and B'
D [auth j]Small nuclear ribonucleoprotein Sm D3
C [auth h]Small nuclear ribonucleoprotein Sm D1
B [auth D]Programmed cell death protein 7-
K [auth i]Small nuclear ribonucleoprotein Sm D2
J [auth F]U11/U12 small nuclear ribonucleoprotein 48 kDa protein
A [auth E]Zinc finger matrin-type protein 5

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
H [auth n]IPR044641Sm-like protein Lsm7/SmGFamily
H [auth n]IPR034098Small nuclear ribonucleoprotein GFamily
H [auth n]IPR001163Sm domain, eukaryotic/archaea-typeDomain
H [auth n]IPR047575Sm domainDomain
H [auth n]IPR010920LSM domain superfamilyHomologous Superfamily
G [auth m]IPR016487Sm-like protein Lsm6/SmFFamily
G [auth m]IPR034100Small nuclear ribonucleoprotein FFamily
G [auth m]IPR001163Sm domain, eukaryotic/archaea-typeDomain
G [auth m]IPR047575Sm domainDomain
G [auth m]IPR010920LSM domain superfamilyHomologous Superfamily
F [auth l]IPR027078Small nuclear ribonucleoprotein EFamily
F [auth l]IPR001163Sm domain, eukaryotic/archaea-typeDomain
F [auth l]IPR047575Sm domainDomain
F [auth l]IPR010920LSM domain superfamilyHomologous Superfamily
E [auth k]IPR001163Sm domain, eukaryotic/archaea-typeDomain
E [auth k]IPR017131Small ribonucleoprotein associated, SmB/SmNFamily
E [auth k]IPR047575Sm domainDomain
E [auth k]IPR010920LSM domain superfamilyHomologous Superfamily
D [auth j]IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3Family
D [auth j]IPR034099Small nuclear ribonucleoprotein Sm D3Family
D [auth j]IPR001163Sm domain, eukaryotic/archaea-typeDomain
D [auth j]IPR047575Sm domainDomain
D [auth j]IPR010920LSM domain superfamilyHomologous Superfamily
C [auth h]IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3Family
C [auth h]IPR034102Small nuclear ribonucleoprotein D1Domain
C [auth h]IPR001163Sm domain, eukaryotic/archaea-typeDomain
C [auth h]IPR047575Sm domainDomain
C [auth h]IPR010920LSM domain superfamilyHomologous Superfamily
B [auth D]IPR031974Programmed cell death protein 7Family
B [auth D]IPR052831Apoptosis-promoting proteinFamily
K [auth i]IPR001163Sm domain, eukaryotic/archaea-typeDomain
K [auth i]IPR047575Sm domainDomain
K [auth i]IPR027248Small nuclear ribonucleoprotein Sm D2Family
K [auth i]IPR010920LSM domain superfamilyHomologous Superfamily
J [auth F]IPR022776TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domainDomain
J [auth F]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
J [auth F]IPR051591UPF0224 (FAM112) RNA ProcessingFamily
A [auth E]IPR036855Zinc finger, CCCH-type superfamilyHomologous Superfamily
A [auth E]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
A [auth E]IPR000571Zinc finger, CCCH-typeDomain
A [auth E]IPR013085U1-C, C2H2-type zinc fingerDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
H [auth n]PharosP62308
G [auth m]PharosP62306
F [auth l]PharosP62304
E [auth k]PharosP14678
D [auth j]PharosP62318
C [auth h]PharosP62314
B [auth D]PharosQ8N8D1
K [auth i]PharosP62316
J [auth F]PharosQ6IEG0