9GD9 | pdb_00009gd9

NME1 94-Oligophosphoserine

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F [auth A]	SCOP2B Superfamily	Nucleoside diphosphate kinase, NDK	8042449	3001175	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	Nucleoside diphosphate kinase, NDK	8042449	3001175	SCOP2B (2022-06-29)
D [auth E]	SCOP2B Superfamily	Nucleoside diphosphate kinase, NDK	8042449	3001175	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	Nucleoside diphosphate kinase, NDK	8042449	3001175	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	Nucleoside diphosphate kinase, NDK	8042449	3001175	SCOP2B (2022-06-29)
A [auth B]	SCOP2B Superfamily	Nucleoside diphosphate kinase, NDK	8042449	3001175	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth A]	PF00334	Nucleoside diphosphate kinase (NDK)	Nucleoside diphosphate kinase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth A]	Nucleoside diphosphate kinase A	RNA binding binding nucleic acid binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding RNA binding binding nucleic acid binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding magnesium ion binding metal ion binding adenyl ribonucleotide binding adenyl nucleotide binding ATP binding catalytic activity, acting on DNA nuclease activity catalytic activity, acting on a nucleic acid catalytic activity DNA nuclease activity hydrolase activity, acting on ester bonds 3'-5' exonuclease activity hydrolase activity exonuclease activity nucleobase-containing compound kinase activity kinase activity transferase activity phosphotransferase activity, phosphate group as acceptor nucleoside diphosphate kinase activity transferase activity, transferring phosphorus-containing groups identical protein binding protein binding ribonucleoprotein complex binding protein-containing complex binding ribosomal small subunit binding ribosome binding	regulation of molecular function positive regulation of molecular function regulation of DNA binding regulation of binding biological regulation positive regulation of binding positive regulation of DNA binding developmental process cellular developmental process cell differentiation cellular process localization import into cell transport regulation of molecular function positive regulation of molecular function regulation of DNA binding regulation of binding biological regulation positive regulation of binding positive regulation of DNA binding developmental process cellular developmental process cell differentiation cellular process localization import into cell transport endocytosis establishment of localization vesicle-mediated transport regulation of biological process regulation of cellular process regulation of apoptotic process apoptotic process regulation of programmed cell death cell death programmed cell death cell population proliferation positive regulation of cell population proliferation positive regulation of epithelial cell proliferation positive regulation of biological process regulation of cell population proliferation regulation of epithelial cell proliferation epithelial cell proliferation positive regulation of cellular process negative regulation of cell population proliferation negative regulation of cellular process negative regulation of biological process multicellular organism development multicellular organismal process anatomical structure development nervous system development system development ribose phosphate metabolic process nucleotide biosynthetic process carbohydrate derivative metabolic process pyrimidine nucleotide metabolic process nucleobase-containing compound metabolic process ribonucleotide biosynthetic process ribonucleotide metabolic process pyrimidine ribonucleoside triphosphate biosynthetic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process small molecule metabolic process pyrimidine nucleoside triphosphate biosynthetic process pyrimidine-containing compound biosynthetic process phosphorus metabolic process ribose phosphate biosynthetic process pyrimidine ribonucleotide metabolic process nucleoside phosphate metabolic process carbohydrate derivative biosynthetic process pyrimidine-containing compound metabolic process pyrimidine nucleoside triphosphate metabolic process nucleoside triphosphate biosynthetic process primary metabolic process nucleotide metabolic process nucleobase-containing compound biosynthetic process ribonucleoside triphosphate biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process pyrimidine ribonucleoside triphosphate metabolic process metabolic process UTP biosynthetic process nucleoside triphosphate metabolic process UTP metabolic process pyrimidine nucleotide biosynthetic process pyrimidine ribonucleotide biosynthetic process GTP metabolic process GTP biosynthetic process purine ribonucleotide biosynthetic process purine ribonucleoside triphosphate biosynthetic process purine nucleotide metabolic process purine nucleoside triphosphate biosynthetic process purine-containing compound biosynthetic process purine ribonucleoside triphosphate metabolic process purine nucleoside triphosphate metabolic process purine-containing compound metabolic process purine ribonucleotide metabolic process purine nucleotide biosynthetic process regulation of body fluid levels secretion mammary gland development gland development animal organ development body fluid secretion lactation regulation of biological quality CTP biosynthetic process CTP metabolic process	cellular anatomical structure membrane ruffle cell leading edge plasma membrane leading edge membrane plasma membrane bounded cell projection cell periphery cell projection ruffle membrane plasma membrane region cell projection membrane extracellular exosome membrane-bounded organelle cellular anatomical structure membrane ruffle cell leading edge plasma membrane leading edge membrane plasma membrane bounded cell projection cell periphery cell projection ruffle membrane plasma membrane region cell projection membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol early endosome endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cytoplasmic vesicle nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth A]	IPR023005	Nucleoside diphosphate kinase, active site	Active Site
A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth A]	IPR034907	Nucleoside diphosphate kinase-like domain	Domain
A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth A]	IPR036850	Nucleoside diphosphate kinase-like domain superfamily	Homologous Superfamily
A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth A]	IPR001564	Nucleoside diphosphate kinase	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth A]	Pharos: P15531	hypertrophic cardiomyopathy neuroblastoma Neoplasm Metastasis colorectal cancer colorectal carcinoma diabetes mellitus non-small cell lung carcinoma heart disease lung adenocarcinoma congestive heart failure hepatocellular carcinoma neuroblastoma, susceptibility to

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.