cryo-EM structure of Ufd2/Ubc4-Ub in complex with K29-linked triUb (dimeric conformation)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
L [auth b] | SCOP2B Superfamily | UBC-like | 8034822 | 3000570 | SCOP2B (2022-06-29) |
J [auth B] | SCOP2B Superfamily | UBC-like | 8034822 | 3000570 | SCOP2B (2022-06-29) |
K [auth a] | SCOP2B Superfamily | RING/U-box like | 8052866 | 3000160 | SCOP2B (2022-06-29) |
K [auth a] | SCOP2B Superfamily | Ufd2 core-like | 8052864 | 3002149 | SCOP2B (2022-06-29) |
I [auth A] | SCOP2B Superfamily | Ufd2 core-like | 8052864 | 3002149 | SCOP2B (2022-06-29) |
I [auth A] | SCOP2B Superfamily | RING/U-box like | 8052866 | 3000160 | SCOP2B (2022-06-29) |
D [auth d] | SCOP2B Superfamily | Ubiquitin-like | 8043829 | 3000157 | SCOP2B (2022-06-29) |
A [auth D] | SCOP2B Superfamily | Ubiquitin-like | 8043829 | 3000157 | SCOP2B (2022-06-29) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
J [auth B], L [auth b] | PF00179 | Ubiquitin-conjugating enzyme (UQ_con) | Ubiquitin-conjugating enzyme | Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ... | Domain |
I [auth A], K [auth a] | PF10408 | Ubiquitin elongating factor core (Ufd2P_core) | Ubiquitin elongating factor core | - | Family |
I [auth A], K [auth a] | PF04564 | U-box domain (U-box) | U-box domain | The U-box is a domain of ~70 amino acids that is present in proteins from yeast to human. It consists of the beta-beta-alpha-beta-alpha- fold typical of U-box and RING domains. The central alpha helix is flanked by two prominent surface-exposed loop ... | Domain |
PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain | |
A [auth D], D [auth d] | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
P62979 | : ||
A [auth D], D [auth d] | P0CG48 | :