9OFV | pdb_00009ofv

Consensus reconstruction of the eukaryotic Ribosome-associated Quality Control complex

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
K [auth 3]SCOP2B SuperfamilyRibosomal protein L22 8076708 3001078 SCOP2B (2022-06-29)
M [auth 5]SCOP2B SuperfamilyRibosomal protein L19 (L19e) 8077485 3000890 SCOP2B (2022-06-29)
P [auth 8]SCOP2B Superfamily60S Ribosomal protein L22e 8053058 3002158 SCOP2B (2022-06-29)
Q [auth I]SCOP2B Superfamily50S Ribosomal protein L14-like 8103364 3000433 SCOP2B (2022-06-29)
S [auth L]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8076760 3000334 SCOP2B (2022-06-29)
T [auth M]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053046 3000334 SCOP2B (2022-06-29)
U [auth N]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8077127 3001045 SCOP2B (2022-06-29)
W [auth P]SCOP2B SuperfamilyL30e-like 8039862 3001739 SCOP2B (2022-06-29)
AA [auth T]SCOP2B SuperfamilyRibosomal protein L34e-like 8053547 3002203 SCOP2B (2022-06-29)
HA [auth c]SCOP2B SuperfamilyZn-binding ribosomal proteins 8103126 3001320 SCOP2B (2022-06-29)
NA [auth k]SCOP2B SuperfamilyTranslational proteins 8078363 3000811 SCOP2B (2022-06-29)
OA [auth l]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like 8052815 3002143 SCOP2B (2022-06-29)
OA [auth l]SCOP2B SuperfamilyRibosomal protein L4 8052816 3001146 SCOP2B (2022-06-29)
PA [auth m]SCOP2B SuperfamilyTranslational machinery components 8052875 3000571 SCOP2B (2022-06-29)
SA [auth p]SCOP2B SuperfamilyL30e-like 8063962 3001739 SCOP2B (2022-06-29)
AB [auth g]SCOP2B SuperfamilyPentein 8036230 3000640 SCOP2B (2022-06-29)
GB [auth w]SCOP2B SuperfamilyRibosomal protein L1p/L10e-like 8098448 3001911 SCOP2B (2022-06-29)
HB [auth X]SCOP2B SuperfamilyRibosomal L38e protein-like 8053562 3002206 SCOP2B (2022-06-29)
JB [auth 2]SCOP2B SuperfamilyUbiquitin-like 8043829 3000157 SCOP2B (2022-06-29)
V [auth O]SCOP2B SuperfamilyRibosomal protein L29e 8053045 3002157 SCOP2B (2022-06-29)
Z [auth S]SCOP2B SuperfamilyTranslational proteins 8087451 3000811 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyUbiquitin-like 8040187 3000157 SCOP2B (2022-06-29)
I [auth J]SCOP2B SuperfamilyUbiquitin-like 8040187 3000157 SCOP2B (2022-06-29)
CA [auth V]SCOP2B SuperfamilyRibosomal protein L36e 8053115 3002161 SCOP2B (2022-06-29)
DA [auth W]SCOP2B SuperfamilyZn-binding ribosomal proteins 8080044 3001320 SCOP2B (2022-06-29)
EA [auth Y]SCOP2B SuperfamilyRibosomal protein L39e 8078549 3001756 SCOP2B (2022-06-29)
RA [auth o]SCOP2B SuperfamilyRibosomal L30p/L7e protein, N-terminal domain-lke 8052916 3002152 SCOP2B (2022-06-29)
RA [auth o]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8052917 3001378 SCOP2B (2022-06-29)
UA [auth r]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8079407 3000884 SCOP2B (2022-06-29)
VA [auth s]SCOP2B SuperfamilyRL5-like 8073884 3001709 SCOP2B (2022-06-29)
WA [auth t]SCOP2B SuperfamilyRibosomal protein L13e-like 8053159 3002162 SCOP2B (2022-06-29)
L [auth 4]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8095970 3001045 SCOP2B (2022-06-29)
KB [auth a0]SCOP2B SuperfamilyRibosomal protein L13 8066053 3001134 SCOP2B (2022-06-29)
LB [auth b0]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8095962 3000210 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
A, B, C, D, E
PF02933Cell division protein 48 (CDC48), domain 2 (CDC48_2)Cell division protein 48 (CDC48), domain 2This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C-terminus. The VAT-N domain found in AAA ATPases Pfam:PF00004 is a substrate 185-residue recognition domain [1].
Domain
A, B, C, D, E
PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
A, B, C, D, E
PF05670NFACT protein RNA binding domain (NFACT-R_1)NFACT protein RNA binding domainThis domain occurs in proteins that have been annotated as Fibronectin/fibrinogen binding protein by similarity. This annotation comes from Swiss:O34693 where the N-terminal region is involved in this activity [1]. It is an RNA binding domain of the ...This domain occurs in proteins that have been annotated as Fibronectin/fibrinogen binding protein by similarity. This annotation comes from Swiss:O34693 where the N-terminal region is involved in this activity [1]. It is an RNA binding domain of the NFACT (NEMF, FbpA, Caliban, and Tae2) proteins. This NFACT-R family is found in two eukaryotic gene contexts: fused to the NFACT-N and NFACT-C domains in the NFACT protein involved in the ribosomal quality control pathway which contributes to CAT-tailing and as a standalone domain [2]. Additionally this domain contains a conserved motif D/E-X-W/Y-X-H that may be functionally important.
Domain
A, B, C, D, E
PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
A, B, C, D, E
PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
A, B, C, D, E
PF22958E3 ubiquitin-protein ligase listerin, N-terminal domain (Ltn1_1st)E3 ubiquitin-protein ligase listerin, N-terminal domain- Repeat
A, B, C, D, E
PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
A, B, C, D, E
PF05833NFACT N-terminal and middle domains (NFACT_N)NFACT N-terminal and middle domains- Family
K [auth 3]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
M [auth 5]PF01280Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e)Ribosomal protein L19e, N-terminal domainThis domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. Domain
P [auth 8]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
Q [auth I]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
S [auth L]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
S [auth L]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
S [auth L]PF00467KOW motif (KOW)KOW motif- Family
T [auth M]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
T [auth M]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
U [auth N]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
U [auth N]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
AA [auth T]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
BA [auth U]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
BA [auth U]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
BA [auth U]PF00467KOW motif (KOW)KOW motif- Family
JB [auth 2]PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
R [auth 9]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24eDomain
V [auth O]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
X [auth Q]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
X [auth Q]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
Y [auth R]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
Y [auth R]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
Z [auth S]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5Domain
Z [auth S]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
Z [auth S]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35AeDomain
G [auth K],
H,
I [auth J]		PF00240Ubiquitin family (ubiquitin)Ubiquitin familyThis family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ...This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites [5].
Domain
CA [auth V]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
DA [auth W]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
DA [auth W]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10. Domain
EA [auth Y]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
FA [auth Z]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. Domain
FA [auth Z]PF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e familyBovine L40 has been identified as a secondary RNA binding protein [1]. L40 is fused to a ubiquitin protein [2]. Domain
FA [auth Z]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domainDomain
J [auth G]PF05020NPL4 family, putative zinc binding region (zf-NPL4)NPL4 family, putative zinc binding region- Family
J [auth G]PF01912eIF-6 family (eIF-6)eIF-6 family- Family
J [auth G]PF05021NPL4 family (NPL4)NPL4 family- Family
EB [auth 0]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
L [auth 4]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
N [auth 6]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Cell division control protein 48
K [auth 3]60S ribosomal protein L17-A
M [auth 5]60S ribosomal protein L19-A
O [auth 7]60S ribosomal protein L21-A
P [auth 8]60S ribosomal protein L22-A
Q [auth I]60S ribosomal protein L23-A
S [auth L]60S ribosomal protein L26-A
T [auth M]60S ribosomal protein L27-A
U [auth N]60S ribosomal protein L28
W [auth P]60S ribosomal protein L30
AA [auth T]60S ribosomal protein L34-A
BA [auth U]60S ribosomal protein L35-A
HA [auth c]60S ribosomal protein L43-A
IA [auth d]60S ribosomal protein L41-A
JA [auth f]25S rRNA---
MA [auth j]60S ribosomal protein L2-A
NA [auth k]Large ribosomal subunit protein uL3
OA [auth l]Large ribosomal subunit protein uL4A
PA [auth m]Large ribosomal subunit protein uL18
SA [auth p]60S ribosomal protein L8-A
TA [auth q]60S ribosomal protein L9-A
AB [auth g]Eukaryotic translation initiation factor 6
BB [auth x],
CB [auth y]		Ala tRNA---
GB [auth w]Large ribosomal subunit protein uL1A
HB [auth X]Large ribosomal subunit protein eL38
IB [auth v]Ribosome quality control complex subunit 1
JB [auth 2]Polyubiquitin-C
R [auth 9]Large ribosomal subunit protein eL24A
V [auth O]Large ribosomal subunit protein eL29
X [auth Q]60S ribosomal protein L31-A
Y [auth R]Large ribosomal subunit protein eL32
Z [auth S]60S ribosomal protein L33-A
G [auth K],
H,
I [auth J]		Ubiquitin
CA [auth V]60S ribosomal protein L36-A
DA [auth W]60S ribosomal protein L37-A
EA [auth Y]60S ribosomal protein L39
FA [auth Z]Ubiquitin-60S ribosomal protein L40
GA [auth b]60S ribosomal protein L42-A
J [auth G]Nuclear protein localization protein 4
KA [auth h]5S rRNA---
LA [auth i]5.8S rRNA---
QA [auth n]Large ribosomal subunit protein eL6B
RA [auth o]60S ribosomal protein L7-A
UA [auth r]Large ribosomal subunit protein uL16
VA [auth s]Large ribosomal subunit protein uL5A
WA [auth t]60S ribosomal protein L13-A
XA [auth u]60S ribosomal protein L14-A
YA [auth a]Ribosome quality control complex subunit 2
ZA [auth e]E3 ubiquitin-protein ligase listerin
DB [auth z]Large ribosomal subunit protein uL11A
EB [auth 0]60S acidic ribosomal protein P0
L [auth 4]60S ribosomal protein L18-A
FB [auth 1]CAT-tailed nascent peptide---
KB [auth a0]60S ribosomal protein L16-A
LB [auth b0]60S ribosomal protein L25
N [auth 6]60S ribosomal protein L20-A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR003959ATPase, AAA-type, coreDomain
A, B, C, D, E
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A, B, C, D, E
IPR029067CDC48 domain 2-like superfamilyHomologous Superfamily
A, B, C, D, E
IPR005938AAA ATPase, CDC48 familyFamily
A, B, C, D, E
IPR003338CDC48, N-terminal subdomainDomain
A, B, C, D, E
IPR004201CDC48, domain 2Domain
A, B, C, D, E
IPR009010Aspartate decarboxylase-like domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR003593AAA+ ATPase domainDomain
A, B, C, D, E
IPR041569AAA ATPase, AAA+ lid domainDomain
A, B, C, D, E
IPR050168AAA ATPase domain-containing proteinFamily
A, B, C, D, E
IPR003960ATPase, AAA-type, conserved siteConserved Site
K [auth 3]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
K [auth 3]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
K [auth 3]IPR001063Large ribosomal subunit protein uL22Family
K [auth 3]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
M [auth 5]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
M [auth 5]IPR039547Large ribosomal subunit protein eL19Family
M [auth 5]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
M [auth 5]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
M [auth 5]IPR000196Large ribosomal subunit protein eL19 domainDomain
M [auth 5]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
O [auth 7]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
O [auth 7]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
O [auth 7]IPR001147Large ribosomal subunit protein eL21Family
O [auth 7]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
P [auth 8]IPR002671Large ribosomal subunit protein eL22Family
P [auth 8]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
Q [auth I]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
Q [auth I]IPR000218Large ribosomal subunit protein uL14Family
Q [auth I]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
S [auth L]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
S [auth L]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
S [auth L]IPR005824KOWDomain
S [auth L]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
S [auth L]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
S [auth L]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
T [auth M]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
T [auth M]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
T [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
T [auth M]IPR001141Large ribosomal subunit protein eL27Family
T [auth M]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
U [auth N]IPR021131Large ribosomal subunit protein uL15/eL18Domain
U [auth N]IPR030878Large ribosomal subunit protein uL15Family
U [auth N]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
U [auth N]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
W [auth P]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
W [auth P]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
W [auth P]IPR039109Large ribosomal subunit protein eL30-likeFamily
W [auth P]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
AA [auth T]IPR008195Large ribosomal subunit protein eL34Family
AA [auth T]IPR038562Large ribosomal subunit protein eL34, C-terminal domain superfamilyHomologous Superfamily
AA [auth T]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
BA [auth U]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
BA [auth U]IPR001854Large ribosomal subunit protein uL29Family
BA [auth U]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
BA [auth U]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
HA [auth c]IPR002674Large ribosomal subunit protein eL43Family
HA [auth c]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
HA [auth c]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
HA [auth c]IPR050522Eukaryotic ribosomal protein eL43Family
IA [auth d]IPR007836Large ribosomal subunit protein eS32Family
MA [auth j]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
MA [auth j]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
MA [auth j]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
MA [auth j]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
MA [auth j]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
MA [auth j]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
MA [auth j]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
MA [auth j]IPR002171Large ribosomal subunit protein uL2Family
NA [auth k]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
NA [auth k]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
NA [auth k]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
NA [auth k]IPR000597Large ribosomal subunit protein uL3Family
NA [auth k]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
OA [auth l]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
OA [auth l]IPR002136Large ribosomal subunit protein uL4Family
OA [auth l]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
OA [auth l]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
OA [auth l]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
PA [auth m]IPR005485Large ribosomal subunit protein uL18, eukaryotic/archaealFamily
PA [auth m]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
SA [auth p]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
SA [auth p]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
SA [auth p]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
SA [auth p]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
SA [auth p]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
SA [auth p]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
TA [auth q]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
TA [auth q]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
TA [auth q]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
TA [auth q]IPR000702Large ribosomal subunit protein uL6-likeFamily
AB [auth g]IPR002769Translation initiation factor IF6Family
GB [auth w]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
GB [auth w]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
GB [auth w]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
GB [auth w]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
GB [auth w]IPR002143Large ribosomal subunit protein uL1Family
GB [auth w]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
HB [auth X]IPR002675Large ribosomal subunit protein eL38Family
HB [auth X]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
IB [auth v]IPR006994TCF25/Rqc1Family
JB [auth 2]IPR019954Ubiquitin conserved siteConserved Site
JB [auth 2]IPR000626Ubiquitin-like domainDomain
JB [auth 2]IPR019956Ubiquitin domainDomain
JB [auth 2]IPR050158Ubiquitin and ubiquitin-likeFamily
JB [auth 2]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
R [auth 9]IPR056366Large ribosomal subunit protein eL24Family
R [auth 9]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
R [auth 9]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
R [auth 9]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
V [auth O]IPR002673Large ribosomal subunit protein eL29Family
X [auth Q]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
X [auth Q]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
X [auth Q]IPR000054Large ribosomal subunit protein eL31Family
Y [auth R]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
Y [auth R]IPR001515Large ribosomal subunit protein eL32Family
Y [auth R]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
Z [auth S]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
Z [auth S]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
Z [auth S]IPR001780Large ribosomal subunit protein eL33Family
Z [auth S]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
G [auth K],
H,
I [auth J]		IPR019954Ubiquitin conserved siteConserved Site
G [auth K],
H,
I [auth J]		IPR000626Ubiquitin-like domainDomain
G [auth K],
H,
I [auth J]		IPR019956Ubiquitin domainDomain
G [auth K],
H,
I [auth J]		IPR050158Ubiquitin and ubiquitin-likeFamily
G [auth K],
H,
I [auth J]		IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
CA [auth V]IPR000509Large ribosomal subunit protein eL36Family
CA [auth V]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
DA [auth W]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
DA [auth W]IPR001569Large ribosomal subunit protein eL37Family
DA [auth W]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
DA [auth W]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
EA [auth Y]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
EA [auth Y]IPR000077Large ribosomal subunit protein eL39Family
EA [auth Y]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
FA [auth Z]IPR019954Ubiquitin conserved siteConserved Site
FA [auth Z]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
FA [auth Z]IPR000626Ubiquitin-like domainDomain
FA [auth Z]IPR019956Ubiquitin domainDomain
FA [auth Z]IPR050158Ubiquitin and ubiquitin-likeFamily
FA [auth Z]IPR001975Large ribosomal subunit protein eL40 domainDomain
FA [auth Z]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
GA [auth b]IPR053708Eukaryotic Ribosomal Large Subunit eL42Homologous Superfamily
GA [auth b]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
GA [auth b]IPR000552Large ribosomal subunit protein eL42Family
J [auth G]IPR007716NPL4, zinc-binding putativeDomain
J [auth G]IPR007717Nuclear pore localisation protein NPL4, C-terminalDomain
J [auth G]IPR016563Nuclear protein localization protein 4Family
J [auth G]IPR037518MPN domainDomain
J [auth G]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
QA [auth n]IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
QA [auth n]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
QA [auth n]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
QA [auth n]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
QA [auth n]IPR000915Large ribosomal subunit protein eL6Family
RA [auth o]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
RA [auth o]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
RA [auth o]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
RA [auth o]IPR039699Large ribosomal subunit protein uL30Family
RA [auth o]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
RA [auth o]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
RA [auth o]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
UA [auth r]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
UA [auth r]IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
UA [auth r]IPR047873Large ribosomal subunit protein uL16Family
UA [auth r]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site
UA [auth r]IPR016180Large ribosomal subunit protein uL16 domainDomain
VA [auth s]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
VA [auth s]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
VA [auth s]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
VA [auth s]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
VA [auth s]IPR002132Large ribosomal subunit protein uL5Family
WA [auth t]IPR001380Large ribosomal subunit protein eL13Family
WA [auth t]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
XA [auth u]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
XA [auth u]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
XA [auth u]IPR039660Large ribosomal subunit protein eL14Family
XA [auth u]IPR002784Large ribosomal subunit protein eL14 domainDomain
XA [auth u]IPR005824KOWDomain
YA [auth a]IPR008532NFACT, RNA-binding domainDomain
YA [auth a]IPR021846NFACT protein, C-terminalDomain
YA [auth a]IPR051608Ribosome Quality Control Complex Subunit NEMFFamily
ZA [auth e]IPR016024Armadillo-type foldHomologous Superfamily
ZA [auth e]IPR039795E3 ubiquitin-protein ligase listerinFamily
ZA [auth e]IPR054476E3 ubiquitin-protein ligase listerin, N-terminal domainDomain
ZA [auth e]IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
ZA [auth e]IPR011016Zinc finger, RING-CH-typeDomain
ZA [auth e]IPR054477E3 ubiquitin-protein ligase listerin, HEAT repeat regionDomain
ZA [auth e]IPR054478E3 ubiquitin-protein ligase listerin, ubiquitin conjugating domainDomain
ZA [auth e]IPR039804Listerin, zinc finger, RING-typeDomain
ZA [auth e]IPR001841Zinc finger, RING-typeDomain
DB [auth z]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
DB [auth z]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
DB [auth z]IPR000911Ribosomal protein uL11Family
DB [auth z]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
DB [auth z]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
DB [auth z]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
EB [auth 0]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
EB [auth 0]IPR001790Large ribosomal subunit protein uL10Family
EB [auth 0]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
EB [auth 0]IPR030670Large ribosomal subunit protein uL10, eukaryotesFamily
EB [auth 0]IPR050323Universal ribosomal protein uL10Family
EB [auth 0]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
L [auth 4]IPR021131Large ribosomal subunit protein uL15/eL18Domain
L [auth 4]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
L [auth 4]IPR000039Large ribosomal subunit protein eL18Family
L [auth 4]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
KB [auth a0]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
KB [auth a0]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
KB [auth a0]IPR005822Large ribosomal subunit protein uL13Family
KB [auth a0]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
LB [auth b0]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
LB [auth b0]IPR013025Large ribosomal subunit protein uL23-likeFamily
LB [auth b0]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
LB [auth b0]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
LB [auth b0]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
N [auth 6]IPR028877Large ribosomal subunit protein eL20Family
N [auth 6]IPR023573Large ribosomal subunit protein eL20 domainDomain
N [auth 6]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
JB [auth 2]Pharos:  P0CG48