2ESL | pdb_00002esl

Human Cyclophilin C in Complex with Cyclosporin A

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1		6.5		25% PEG550 MME, 10MM ZINC ACETATE, 100MM MES, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298.0K

Crystal Properties
Matthews coefficient	Solvent content
2.31	46.84

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 72.203	α = 90
b = 123.802	β = 90
c = 135.25	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	SBC-3		2005-06-29	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 19-BM		APS	19-BM

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.9	36.4	98.6	0.078	25.5	7		95283		-3

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.9	1.97	97.8		0.515	3.68	7

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.9	36.4	90042	4733	98.6	0.18	0.178	0.1789	0.225	0.2265	RANDOM	26.45

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.07			-1.46		2.52

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.363
r_dihedral_angle_4_deg	19.054
r_dihedral_angle_3_deg	13.992
r_dihedral_angle_1_deg	6.265
r_scangle_it	4.92
r_scbond_it	3.349
r_mcangle_it	2.597
r_mcbond_it	1.726
r_angle_refined_deg	1.373
r_metal_ion_refined	0.338
r_nbtor_refined	0.321
r_nbd_refined	0.209
r_symmetry_vdw_refined	0.197
r_symmetry_metal_ion_refined	0.164
r_symmetry_hbond_refined	0.163
r_xyhbond_nbd_refined	0.133
r_chiral_restr	0.096
r_bond_refined_d	0.012
r_gen_planes_refined	0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	8826
Nucleic Acid Atoms
Solvent Atoms	798
Heterogen Atoms	35

Software

Software
Software Name	Purpose
PHASER	phasing
REFMAC	refinement
HKL-2000	data reduction
SCALEPACK	data scaling