2J3F

L-ficolin complexed to N-acetyl-D-galactosamine


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthew coefficientSolvent content
2.5852.26

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 96.825α = 90
b = 96.825β = 90
c = 141.898γ = 120
Symmetry
Space GroupP 32

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray1002004-11-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM30AESRFBM30A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.819.9296.80.0811.9335520

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1JC92.8153435118081000.2240.2220.277RANDOM41.92
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.170.591.17-1.76
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.676
r_dihedral_angle_3_deg16.453
r_dihedral_angle_4_deg14.566
r_dihedral_angle_1_deg5.283
r_mcangle_it0.945
r_angle_refined_deg0.922
r_scangle_it0.89
r_scbond_it0.558
r_mcbond_it0.537
r_symmetry_hbond_refined0.36
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.676
r_dihedral_angle_3_deg16.453
r_dihedral_angle_4_deg14.566
r_dihedral_angle_1_deg5.283
r_mcangle_it0.945
r_angle_refined_deg0.922
r_scangle_it0.89
r_scbond_it0.558
r_mcbond_it0.537
r_symmetry_hbond_refined0.36
r_nbtor_refined0.33
r_symmetry_vdw_refined0.295
r_nbd_refined0.238
r_xyhbond_nbd_refined0.218
r_metal_ion_refined0.098
r_chiral_restr0.068
r_bond_refined_d0.005
r_gen_planes_refined0.002
r_gen_planes_other
r_bond_other_d
r_symmetry_vdw_other
r_nbtor_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_nbd_other
r_mcbond_other
r_metal_ion_other
r_mcangle_other
r_xyhbond_nbd_other
r_scbond_other
r_angle_other_deg
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms10372
Nucleic Acid Atoms
Solvent Atoms53
Heterogen Atoms220

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
AMoREphasing