Experiment: 2MS9

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-1H JR NOESY	0.2-2 mM DNA (28-MER)-1, 0.2-0.5 mM [U-2% 15N] DNA (28-MER)-2, 0.2-0.5 mM [U-100% 2H] DNA (28-MER)-3	90% H2O/10% D2O	90	7		298
2	2D 1H-1H NOESY	0.2-2 mM DNA (28-MER)-4, 0.2-1 mM [U-4% 13C; U-4% 15N] DNA (28-MER)-5	100% D2O	90	7		298
3	2D 1H-1H TOCSY	0.2-2 mM DNA (28-MER)-4, 0.2-1 mM [U-4% 13C; U-4% 15N] DNA (28-MER)-5	100% D2O	90	7		298
4	2D 1H-13C HSQC aliphatic	0.2-2 mM DNA (28-MER)-4, 0.2-1 mM [U-4% 13C; U-4% 15N] DNA (28-MER)-5	100% D2O	90	7		298
5	2D 1H-13C HSQC aromatic	0.2-2 mM DNA (28-MER)-4, 0.2-1 mM [U-4% 13C; U-4% 15N] DNA (28-MER)-5	100% D2O	90	7		298
6	2D 1H-13C JR HMBC	0.2-2 mM DNA (28-MER)-1, 0.2-0.5 mM [U-2% 15N] DNA (28-MER)-2, 0.2-0.5 mM [U-100% 2H] DNA (28-MER)-3	90% H2O/10% D2O	90	7		298
7	15N-FILTERED	0.2-2 mM DNA (28-MER)-1, 0.2-0.5 mM [U-2% 15N] DNA (28-MER)-2, 0.2-0.5 mM [U-100% 2H] DNA (28-MER)-3	90% H2O/10% D2O	90	7		298
8	D-LABELED	0.2-2 mM DNA (28-MER)-1, 0.2-0.5 mM [U-2% 15N] DNA (28-MER)-2, 0.2-0.5 mM [U-100% 2H] DNA (28-MER)-3	90% H2O/10% D2O	90	7		298

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE	600
2	Bruker	AVANCE	700

NMR Refinement
Method	Details	Software
DGSA-distance geometry simulated annealing, Distance-restrained molecular dynamics		Amber

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	100
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	Amber		Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman
2	data analysis	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	chemical shift assignment	Sparky		Goddard
4	data analysis	Sparky		Goddard
5	peak picking	Sparky		Goddard
6	collection	TopSpin		Bruker Biospin
7	geometry optimization	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
8	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.